View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17063_low_86 (Length: 271)
Name: NF17063_low_86
Description: NF17063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17063_low_86 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 265
Target Start/End: Complemental strand, 37287710 - 37287446
Alignment:
| Q |
1 |
tctattgtcttcaagtgtaccaacaatttggacttctggatgtcgtaagctgccaagagacgattcaagtagccttgattccgaagatatatatagaaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37287710 |
tctattgtcttcaagtgtaccaacaatttggacttctggaggtcgtaagctaccaagagacgattcaagtagccttgattccgaagatatatatagaaat |
37287611 |
T |
|
| Q |
101 |
ttacaagcaggggtaaatgtaaatgatgatgataaggaatcattttctggaagtatgaatagggatgagagctgtgatagcctcatgggacagtcggaag |
200 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37287610 |
ttacatgcaggggtaaatgtaaatgatgatgataaggaatcattttctggaagtatgaatagggatgagagctgtgatagcctcatgggacagtcggaag |
37287511 |
T |
|
| Q |
201 |
tagaaagcaaacaatcatcttctccgttgttaagtccaacatatctttttgcaacaagtgacttt |
265 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37287510 |
tagaaagcaaacgatcatcttctccgttgttaagtccaacatatctttttgcaacaagtgacttt |
37287446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University