View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17063_low_9 (Length: 654)

Name: NF17063_low_9
Description: NF17063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17063_low_9
NF17063_low_9
[»] chr3 (1 HSPs)
chr3 (20-646)||(55422357-55422995)


Alignment Details
Target: chr3 (Bit Score: 582; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 582; E-Value: 0
Query Start/End: Original strand, 20 - 646
Target Start/End: Original strand, 55422357 - 55422995
Alignment:
Q  20 ctcaggatgtttgtcgcagttatggatggaatagaaaacatatttctgaatacccattgctttagcacattgaataagagcaactttaccttcccaatca 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55422357 ctcaggatgtttgtcgcagttatggatggaatagaaaacatatttctgaatacccattgctttagcacattgaataagagcaactttaccttcccaatca 55422456  T
Q  120 actgttttgataggctcttcaggacggccagtggcgcagtcaataacagtatgaactccaactaatgtagcaggaatagtctcaggtttactaagatcag 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55422457 actgttttgataggctcttcaggacggccagtggcgcagtcaataacagtatgaactccaactaatgtagcaggaatagtctcaggtttactaagatcag 55422556  T
Q  220 cattcacaacagttgctccccaatcacgaaggaagtcagctggagcaggcctcggccttaccagacaccggacgtcgtatccttcgtcaagtgccctccg 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55422557 cattcacaacagttgctccccaatcacgaaggaagtcagctggagcaggcctcggccttaccagacaccggacgtcgtatccttcgtcaagtgccctccg 55422656  T
Q  320 aacaatctgccttcccaaagtccccgtggctccaaccacaagtatactcgttggcctaacaggtgtccctggtccaagattcaccgccctctctgaattg 419  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55422657 aacaatctgccttcccaaagtccccgtggctccaactacaagtatactcgttggcctaacaggtgtccctggtccaagattcaccgccctctctgaattg 55422756  T
Q  420 ctattgcatttcactcccactctaataatccttcttcctattcttccacctttgcaaaactcaacaaaatgagg------------aggagaaggagaaa 507  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||            ||||||||||||||    
T  55422757 ctattgcatttcactcccactctaataatccttcttcctcttcttccacctttgcaaaactcaacaaaatgaggaggagaaggagaaggagaaggagaaa 55422856  T
Q  508 gagcatgaaatgcctctctcgtcctcgtcaccaccctaccaggtgtggctgttggtaaccttatcagggtcgccattttcatttttcagaaagaaagaaa 607  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  55422857 gagcatgaaatgcctctctcgtcctcgtcaccaccctaccaggtgtggctgttggtaacctcatcagggtcgccattttcatttttcagaaagaaagaaa 55422956  T
Q  608 gaaagatcaacaaccttcattcattctattatattcttc 646  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  55422957 gaaagatcaacaaccttcattcattctattctattcttc 55422995  T

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