View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17063_low_90 (Length: 258)
Name: NF17063_low_90
Description: NF17063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17063_low_90 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 14 - 234
Target Start/End: Complemental strand, 23801251 - 23801031
Alignment:
| Q |
14 |
agtgagatgaaaggccgcgcattaaagcttgttgaatcatgtgaggccaccgaacacaccattcctttgtgagaagaaatatgtcaagacgactcataga |
113 |
Q |
| |
|
||||| ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| |
|
|
| T |
23801251 |
agtgatatgaaaggccgcgaaataaagcttgttgaatcatgtgaggccaccgaacacaccattcctttgagagaagaaatctgtcaagacgactcataga |
23801152 |
T |
|
| Q |
114 |
agaacaatctcctctaaaccaagtaaagctcatagaagaacaatctcctcttcataacttgggccaataacaatactcttccgcttagtgtaagacctaa |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
23801151 |
agaacaatctcctctaaaccaagtaaagctcacagaagaacaatctcctcttcataacttgggccaataacactactcttccgcttagtgtaagacctaa |
23801052 |
T |
|
| Q |
214 |
caacataaaaatcaccacaca |
234 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
23801051 |
caacataaaaatcaccacaca |
23801031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University