View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17063_low_93 (Length: 254)
Name: NF17063_low_93
Description: NF17063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17063_low_93 |
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Alignment Details
Target: chr7 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 5 - 230
Target Start/End: Complemental strand, 27324605 - 27324380
Alignment:
| Q |
5 |
ccaaattcaattaaaatttattcataataccaaaattatccttactcgtttccttcccactcttatgaatgatacgtgattttaattcacgttaggtaaa |
104 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
27324605 |
ccaaattcaattaaaatttattcataataccaaaattatccttactcatttccttcccactcttatgaatggtacgtgattttaattcacgttaggtaaa |
27324506 |
T |
|
| Q |
105 |
ttaagtatatgtgatctgaattcacgtgataaaacaacaacctcaaaatccacctgatacatgattcctttgttgcttgcatctacactgtcttcacaca |
204 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
27324505 |
ttaagtatatgtgatctgaattcatgtgataaaacaacaacctcaaaatccacctgatacatgattcctttgttgcctgcatctacactgtcttcacaca |
27324406 |
T |
|
| Q |
205 |
gccatggatgatgatttccaccaacc |
230 |
Q |
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||||||||||||||||||||||||| |
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| T |
27324405 |
cccatggatgatgatttccaccaacc |
27324380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 5 - 230
Target Start/End: Complemental strand, 28359400 - 28359175
Alignment:
| Q |
5 |
ccaaattcaattaaaatttattcataataccaaaattatccttactcgtttccttcccactcttatgaatgatacgtgattttaattcacgttaggtaaa |
104 |
Q |
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||||||||| ||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28359400 |
ccaaattcatttaaaatttattcataatatcaaaattatccttactcatttccttcccactcttatgaatgatacgtgattttaattcacgttaggtaaa |
28359301 |
T |
|
| Q |
105 |
ttaagtatatgtgatctgaattcacgtgataaaacaacaacctcaaaatccacctgatacatgattcctttgttgcttgcatctacactgtcttcacaca |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| |
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| T |
28359300 |
ttaagtatatgtgatctgaattcacgtgataaaacaacaacctcaaaatccacctgatacatgattcctttgttgcctgcatctacattgtcttcacaca |
28359201 |
T |
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| Q |
205 |
gccatggatgatgatttccaccaacc |
230 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
28359200 |
cccatggatgatgatttccaccaacc |
28359175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 5 - 230
Target Start/End: Complemental strand, 3500839 - 3500611
Alignment:
| Q |
5 |
ccaaattcaattaaaatttattcataataccaaaattatccttactcgtttccttcccactcttatgaatgatacgtgattttaattcacgttaggtaaa |
104 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
3500839 |
ccaaattcaattaaaatttattcataataacaaaattatccttactcatttccttcccactcttatgaatgatacatgattttaattcacgttaggtaaa |
3500740 |
T |
|
| Q |
105 |
ttaagtatatgtgatctgaattcacgtgataaaacaacaacctcaaaatc---cacctgatacatgattcctttgttgcttgcatctacactgtcttcac |
201 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||| |
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| T |
3500739 |
ttaagtatacgtgatctgaattcacgtgataaaacaacaacctcaaaatccaccacctgatacatgattcatttgttgcctgcatctacactgtcttcac |
3500640 |
T |
|
| Q |
202 |
acagccatggatgatgatttccaccaacc |
230 |
Q |
| |
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||| ||||||||||||||||||||||||| |
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| T |
3500639 |
acaaccatggatgatgatttccaccaacc |
3500611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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