View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17063_low_94 (Length: 253)
Name: NF17063_low_94
Description: NF17063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17063_low_94 |
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Alignment Details
Target: chr8 (Bit Score: 151; Significance: 5e-80; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 10 - 179
Target Start/End: Complemental strand, 42733807 - 42733637
Alignment:
| Q |
10 |
attattctgtaatttttggatgtaattcacaaatagctttctatcaaagacaattttgtttgagtgtaagaagtggaaaataaattataagaaaaataga |
109 |
Q |
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| T |
42733807 |
attattgtgtattttttggatgtaattcacaaatagctttctatcaaagacaattttgtttgagtgtaagaagtggaaaataaattataagaaaaataga |
42733708 |
T |
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| Q |
110 |
gaaaaacatatacagtaaat-ttcaacgagttattatattgctccaatatgcccattgacatatttaaaat |
179 |
Q |
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| T |
42733707 |
gagaaacatatacagtaaatattcaacgagttattatattgctccaatatgcccattgacatatttaaaat |
42733637 |
T |
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Target: chr8; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 171 - 236
Target Start/End: Complemental strand, 42733454 - 42733389
Alignment:
| Q |
171 |
atttaaaatagactcaattaggagtaactaaattaacgaggcatcaatttttaaaatagactcaac |
236 |
Q |
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| T |
42733454 |
atttaaaatagactcaattaggagtaactaaattaacgaggcatcaatttttaaaatagactcaac |
42733389 |
T |
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