View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17063_low_97 (Length: 250)
Name: NF17063_low_97
Description: NF17063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17063_low_97 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 37287727 - 37287968
Alignment:
| Q |
1 |
agtcagtcatgctatttgcacgctgtttcaagtgttcgaattctccatccttcatcctcgccaaggtttcctttagactagtaatctgttccttcagcac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37287727 |
agtcagtcatgctatttgcacgctgtttcaagtgttcgaattctccatccttcatcctcgccaaggtttcctttagactagtaatctgttccttcagcac |
37287826 |
T |
|
| Q |
101 |
tttcacttcgccgctatctttattaacccgtgaagcaccaagttcaacagtggagactctctcggcaaacttcagtgtactaattgtttctgcaagagct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37287827 |
tttcacttcgccgctatctttattaacccgtgaagcaccaagttcaacagtggagactctctcggcaaacttcagtgtactaattgtttctgcaagagct |
37287926 |
T |
|
| Q |
201 |
tctgactcggggctaatatgaacaaacatgagcgcctttgct |
242 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
37287927 |
tctgactcggggctaatatgaacaaacatgagcgtctttgct |
37287968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 138 - 232
Target Start/End: Complemental strand, 46217879 - 46217785
Alignment:
| Q |
138 |
ccaagttcaacagtggagactctctcggcaaacttcagtgtactaattgtttctgcaagagcttctgactcggggctaatatgaacaaacatgag |
232 |
Q |
| |
|
|||||||||||||||||||||| ||||| ||||| |||||||||| ||||||| | ||||| || | || || |||||||||||||||||||| |
|
|
| T |
46217879 |
ccaagttcaacagtggagactcgttcggcgaacttgagtgtactaagtgtttctccgagagcatcaggttccggactaatatgaacaaacatgag |
46217785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University