View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17063_low_99 (Length: 248)

Name: NF17063_low_99
Description: NF17063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17063_low_99
NF17063_low_99
[»] chr3 (4 HSPs)
chr3 (1-86)||(40728290-40728375)
chr3 (156-231)||(40728145-40728220)
chr3 (156-227)||(40724123-40724194)
chr3 (7-37)||(40724280-40724310)
[»] chr1 (1 HSPs)
chr1 (161-228)||(10108130-10108197)


Alignment Details
Target: chr3 (Bit Score: 86; Significance: 3e-41; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 40728375 - 40728290
Alignment:
Q  1 tttttgggatacaatttttgtttacaaagttggttgtgaaagcttgggggttgactttggtggacagaacagcatatggaatacta 86  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40728375 tttttgggatacaatttttgtttacaaagttggttgtgaaagcttgggggttgactttggtggacagaacagcatatggaatacta 40728290  T

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Target: chr3; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 156 - 231
Target Start/End: Complemental strand, 40728220 - 40728145
Alignment:
Q  156 aagtcttatcatcatcaaagtattgacaagtctgctttgtctgatcatcttgaagtttatcatggagagtatgagc 231  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40728220 aagtcttatcatcatcaaagtattgacaagtctgctttgtctgatcatcttgaagtttatcatggagagtatgagc 40728145  T

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Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 156 - 227
Target Start/End: Complemental strand, 40724194 - 40724123
Alignment:
Q  156 aagtcttatcatcatcaaagtattgacaagtctgctttgtctgatcatcttgaagtttatcatggagagtat 227  Q
    |||||||| |||||| | |||||| |||| ||||||||||  ||| ||||||||||||||||||||||||||    
T  40724194 aagtcttaccatcattagagtattaacaattctgctttgttcgattatcttgaagtttatcatggagagtat 40724123  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 37
Target Start/End: Complemental strand, 40724310 - 40724280
Alignment:
Q  7 ggatacaatttttgtttacaaagttggttgt 37  Q
    |||||||||||||||||||||||||||||||    
T  40724310 ggatacaatttttgtttacaaagttggttgt 40724280  T

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Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 161 - 228
Target Start/End: Original strand, 10108130 - 10108197
Alignment:
Q  161 ttatcatcatcaaagtattgacaagtctgctttgtctgatcatcttgaagtttatcatggagagtatg 228  Q
    |||||||||| | | |||||| || ||||||||| ||||||||||||||||||||| |||||||||||    
T  10108130 ttatcatcatgagaatattgataaatctgctttggctgatcatcttgaagtttatcttggagagtatg 10108197  T

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