View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17064_high_1 (Length: 713)

Name: NF17064_high_1
Description: NF17064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17064_high_1
NF17064_high_1
[»] chr7 (1 HSPs)
chr7 (1-698)||(32047558-32048256)


Alignment Details
Target: chr7 (Bit Score: 518; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 518; E-Value: 0
Query Start/End: Original strand, 1 - 698
Target Start/End: Original strand, 32047558 - 32048256
Alignment:
Q  1 cgaagaaatgtacacaacaataatttctttctctggacaaaattttgtttaaatgcactgaaatttagaaaactcaaatgcagagaatcaaattttagtc 100  Q
    ||||||||| |||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  32047558 cgaagaaatatacacagcaataatttctttctcttgacaaaattttgtttaaatgcactgaaatttagaaaactcaaatgtagagaatcaaattttagtc 32047657  T
Q  101 ttttaattgttgtgttttcatgacctgaactcgagatacccattcaaaacttaaaatgatagagacctatgtcatcaaaactaagtgcttttgagttatc 200  Q
    |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32047658 ttttaattgttgtgttttcatgacctgaactcgagatatccatttaaaacttaaaatgatagagacctatgtcatcaaaactaagtgcttttgagttatc 32047757  T
Q  201 aataatataatgataatgtgcatatgca-nnnnnnnnnnaggtttcttcgacggaaattcaaaccttaattcatcacgttgtggaggtctagcatttttc 299  Q
    |||||||||||||||||||| |||||||           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  32047758 aataatataatgataatgtgtatatgcatttttttttttaggtttcttcgacggaaattcaaaccttaattcatcacgttgtggaggtctagcacttttc 32047857  T
Q  300 actagattcaaacacaatcaatctattatctttagtttcttgtacctcttatcaaatatcttgaagaggatcannnnnnnnnnnnnnnnnnnnngtaggt 399  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||                      |||||    
T  32047858 actagattcaaacacaatcaatctattatctttagtttcttgtacctcttatcaaatattttgaagaggatcatttttattattttggttttttctaggt 32047957  T
Q  400 tccctccacgagaggtaatcttcatattaatgaaagtcagaaactaaatgtgggtacctctcgtaattgaaatttgaattgttgagttcaccacgttatg 499  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||    
T  32047958 tccctccacgagaggtaatcttcatattaatgaaagtcagaaactaaatgtggatacctctcgtaattgaaatttgaattgttgagttcaccacattatg 32048057  T
Q  500 agtgtctaaccctttacgctagattaaatcactgttggctagaagatggtttattgacaaactacttnnnnnnnncttcaatgctgtctattactctcaa 599  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||    
T  32048058 agagtctaaccctttacgctagattaaatcactgttggctagaagatggtttattgacaaactacttaaaaaaaacttcaatgctgtctattactctcaa 32048157  T
Q  600 ttaagaaaaaagagatccaacttgaatgaatttgatgagatttcatggtgttggcctatctgtaatactctcatatctcattacgtatgttatcatatt 698  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  32048158 ttaagaaaaaagagatccaacttgaatgaatttgatgagatttcatggtgttggcctatctgtaatactctcatatctcattacgtatgttattatatt 32048256  T

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