View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17064_high_11 (Length: 289)

Name: NF17064_high_11
Description: NF17064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17064_high_11
NF17064_high_11
[»] chr2 (17 HSPs)
chr2 (18-275)||(38112426-38112683)
chr2 (18-148)||(38118507-38118635)
chr2 (216-272)||(38118386-38118442)
chr2 (162-194)||(1961407-1961439)
chr2 (162-194)||(27331857-27331889)
chr2 (162-194)||(31024181-31024213)
chr2 (164-194)||(38465799-38465829)
chr2 (162-191)||(21183425-21183454)
chr2 (162-194)||(3098224-3098256)
chr2 (162-194)||(3121432-3121464)
chr2 (162-194)||(7079380-7079412)
chr2 (162-194)||(8740529-8740561)
chr2 (162-194)||(11726593-11726625)
chr2 (162-194)||(13333545-13333577)
chr2 (162-194)||(15119787-15119819)
chr2 (162-194)||(25270954-25270986)
chr2 (162-194)||(41056986-41057018)
[»] chr5 (13 HSPs)
chr5 (216-272)||(9994360-9994416)
chr5 (13-83)||(9994246-9994316)
chr5 (162-204)||(41005668-41005710)
chr5 (162-194)||(10437735-10437767)
chr5 (162-194)||(3100415-3100447)
chr5 (162-190)||(11795750-11795778)
chr5 (162-194)||(14772558-14772590)
chr5 (162-194)||(15549423-15549455)
chr5 (162-194)||(18652863-18652895)
chr5 (162-194)||(26045317-26045349)
chr5 (162-194)||(28518728-28518760)
chr5 (162-194)||(37067863-37067895)
chr5 (162-194)||(43117396-43117428)
[»] chr3 (15 HSPs)
chr3 (160-194)||(52215976-52216010)
chr3 (162-194)||(54595800-54595832)
chr3 (164-194)||(39911141-39911171)
chr3 (162-194)||(331896-331928)
chr3 (162-194)||(7882291-7882323)
chr3 (162-194)||(8504860-8504892)
chr3 (162-194)||(21217176-21217208)
chr3 (162-194)||(23642855-23642887)
chr3 (162-194)||(24075457-24075489)
chr3 (162-194)||(24075543-24075575)
chr3 (162-190)||(24694242-24694270)
chr3 (162-194)||(30519696-30519728)
chr3 (162-194)||(37897780-37897812)
chr3 (162-194)||(39579591-39579623)
chr3 (165-193)||(41254032-41254060)
[»] chr6 (11 HSPs)
chr6 (162-220)||(12104733-12104787)
chr6 (162-194)||(34379833-34379865)
chr6 (165-194)||(26527200-26527229)
chr6 (162-194)||(4329686-4329718)
chr6 (162-194)||(12218455-12218487)
chr6 (162-194)||(16121063-16121095)
chr6 (162-194)||(26527288-26527320)
chr6 (162-194)||(28555045-28555077)
chr6 (162-194)||(31714545-31714577)
chr6 (162-194)||(31996597-31996629)
chr6 (162-194)||(34170088-34170120)
[»] chr8 (6 HSPs)
chr8 (162-194)||(10934701-10934733)
chr8 (162-193)||(7484715-7484746)
chr8 (164-194)||(24017818-24017848)
chr8 (165-194)||(11295674-11295703)
chr8 (162-194)||(13964429-13964461)
chr8 (165-193)||(27503002-27503030)
[»] chr7 (9 HSPs)
chr7 (162-194)||(2943222-2943254)
chr7 (162-194)||(23818434-23818466)
chr7 (162-194)||(25245241-25245273)
chr7 (162-193)||(27330517-27330548)
chr7 (162-194)||(7701198-7701230)
chr7 (162-194)||(8447815-8447847)
chr7 (162-194)||(10095729-10095761)
chr7 (162-194)||(13797678-13797710)
chr7 (162-194)||(31115707-31115739)
[»] chr1 (10 HSPs)
chr1 (162-194)||(14967323-14967355)
chr1 (162-194)||(24981939-24981971)
chr1 (162-192)||(33765885-33765915)
chr1 (162-194)||(3549789-3549821)
chr1 (162-194)||(8338685-8338717)
chr1 (162-194)||(9101082-9101114)
chr1 (162-194)||(28038925-28038957)
chr1 (165-193)||(39420410-39420438)
chr1 (162-194)||(41007775-41007807)
chr1 (162-194)||(45115268-45115300)
[»] scaffold0036 (1 HSPs)
scaffold0036 (163-193)||(89609-89639)
[»] chr4 (11 HSPs)
chr4 (164-194)||(484034-484064)
chr4 (164-193)||(39533856-39533885)
chr4 (162-194)||(14450967-14450999)
chr4 (162-194)||(18488618-18488650)
chr4 (162-194)||(21142100-21142132)
chr4 (162-194)||(32588114-32588146)
chr4 (162-194)||(36786160-36786192)
chr4 (162-194)||(40952358-40952390)
chr4 (162-194)||(44549330-44549362)
chr4 (162-194)||(47308124-47308156)
chr4 (162-194)||(55936085-55936117)
[»] scaffold0009 (1 HSPs)
scaffold0009 (162-194)||(7755-7787)


Alignment Details
Target: chr2 (Bit Score: 230; Significance: 1e-127; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 18 - 275
Target Start/End: Complemental strand, 38112683 - 38112426
Alignment:
Q  18 gaaaaacaacataacaattattagaatccatatcagaatttcaatatcccttatatatttatataatagaataaaatgtcaactacggtccacaaacaat 117  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||    
T  38112683 gaaaaacaacacaacaattattagaatccatatcagaatttcaatatcccttatatatttatataatagaataaaatgtcaactacagtctacaaacaat 38112584  T
Q  118 aacttcaatccttccttccacttcaagaccatatactcattcagtgaatctaaaatgttgatttttgcttataatagataatgaccagaagatgtaaatt 217  Q
    ||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||    
T  38112583 aacttcaatccttccttccacttcaagactatatactcattcaatgaatctaaaatgttgatttttgcttataatagataatgactagaagttgtaaatt 38112484  T
Q  218 acaaatatgctcttgactacttcctaaaacggccgctggaaccctcctatattaaata 275  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38112483 acaaatatgctcttgactacttcctaaaacggccgctggaaccctcctatattaaata 38112426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 18 - 148
Target Start/End: Complemental strand, 38118635 - 38118507
Alignment:
Q  18 gaaaaacaacataacaattattagaatccatatcagaatttcaatatcccttatatatttatataatagaataaaatgtcaactacggtccacaaacaat 117  Q
    |||||||||||   ||||||||||||||| |||||||||||||||| |  |||||| ||||||||||| ||||||||||||||||| ||| |||||||||    
T  38118635 gaaaaacaacagcccaattattagaatccgtatcagaatttcaataac--ttatatctttatataataaaataaaatgtcaactacagtctacaaacaat 38118538  T
Q  118 aacttcaatccttccttccacttcaagacca 148  Q
    ||| |||| |||||||| |||| ||| ||||    
T  38118537 aacatcaacccttcctttcactgcaaaacca 38118507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 216 - 272
Target Start/End: Complemental strand, 38118442 - 38118386
Alignment:
Q  216 ttacaaatatgctcttgactacttcctaaaacggccgctggaaccctcctatattaa 272  Q
    ||||||||| || ||||||||||||||||||||||||||||||||||||||||||||    
T  38118442 ttacaaataagcccttgactacttcctaaaacggccgctggaaccctcctatattaa 38118386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 162 - 194
Target Start/End: Original strand, 1961407 - 1961439
Alignment:
Q  162 tgaatctaaaatgttgatttttgcttataatag 194  Q
    |||||||||||||||||||||||||||||||||    
T  1961407 tgaatctaaaatgttgatttttgcttataatag 1961439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 162 - 194
Target Start/End: Original strand, 27331857 - 27331889
Alignment:
Q  162 tgaatctaaaatgttgatttttgcttataatag 194  Q
    |||||||||||||||||||||||||||||||||    
T  27331857 tgaatctaaaatgttgatttttgcttataatag 27331889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 162 - 194
Target Start/End: Complemental strand, 31024213 - 31024181
Alignment:
Q  162 tgaatctaaaatgttgatttttgcttataatag 194  Q
    |||||||||||||||||||||||||||||||||    
T  31024213 tgaatctaaaatgttgatttttgcttataatag 31024181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 194
Target Start/End: Complemental strand, 38465829 - 38465799
Alignment:
Q  164 aatctaaaatgttgatttttgcttataatag 194  Q
    |||||||||||||||||||||||||||||||    
T  38465829 aatctaaaatgttgatttttgcttataatag 38465799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 191
Target Start/End: Original strand, 21183425 - 21183454
Alignment:
Q  162 tgaatctaaaatgttgatttttgcttataa 191  Q
    ||||||||||||||||||||||||||||||    
T  21183425 tgaatctaaaatgttgatttttgcttataa 21183454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 194
Target Start/End: Original strand, 3098224 - 3098256
Alignment:
Q  162 tgaatctaaaatgttgatttttgcttataatag 194  Q
    |||||||||||||| ||||||||||||||||||    
T  3098224 tgaatctaaaatgtagatttttgcttataatag 3098256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 194
Target Start/End: Complemental strand, 3121464 - 3121432
Alignment:
Q  162 tgaatctaaaatgttgatttttgcttataatag 194  Q
    |||||||||||| ||||||||||||||||||||    
T  3121464 tgaatctaaaatattgatttttgcttataatag 3121432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 194
Target Start/End: Complemental strand, 7079412 - 7079380
Alignment:
Q  162 tgaatctaaaatgttgatttttgcttataatag 194  Q
    ||||| |||||||||||||||||||||||||||    
T  7079412 tgaatttaaaatgttgatttttgcttataatag 7079380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 194
Target Start/End: Complemental strand, 8740561 - 8740529
Alignment:
Q  162 tgaatctaaaatgttgatttttgcttataatag 194  Q
    |||||||||||||| ||||||||||||||||||    
T  8740561 tgaatctaaaatgtagatttttgcttataatag 8740529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 194
Target Start/End: Original strand, 11726593 - 11726625
Alignment:
Q  162 tgaatctaaaatgttgatttttgcttataatag 194  Q
    ||||||||||||||| |||||||||||||||||    
T  11726593 tgaatctaaaatgttaatttttgcttataatag 11726625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 194
Target Start/End: Original strand, 13333545 - 13333577
Alignment:
Q  162 tgaatctaaaatgttgatttttgcttataatag 194  Q
    |||||||||||||| ||||||||||||||||||    
T  13333545 tgaatctaaaatgtagatttttgcttataatag 13333577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 194
Target Start/End: Complemental strand, 15119819 - 15119787
Alignment:
Q  162 tgaatctaaaatgttgatttttgcttataatag 194  Q
    ||||||||||||||| |||||||||||||||||    
T  15119819 tgaatctaaaatgttaatttttgcttataatag 15119787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 194
Target Start/End: Original strand, 25270954 - 25270986
Alignment:
Q  162 tgaatctaaaatgttgatttttgcttataatag 194  Q
    |||||||||||||| ||||||||||||||||||    
T  25270954 tgaatctaaaatgtagatttttgcttataatag 25270986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 194
Target Start/End: Original strand, 41056986 - 41057018
Alignment:
Q  162 tgaatctaaaatgttgatttttgcttataatag 194  Q
    |||||||||||||| ||||||||||||||||||    
T  41056986 tgaatctaaaatgtagatttttgcttataatag 41057018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 216 - 272
Target Start/End: Original strand, 9994360 - 9994416
Alignment:
Q  216 ttacaaatatgctcttgactacttcctaaaacggccgctggaaccctcctatattaa 272  Q
    ||||||||||||||||||||||||||||||| |||| ||||| ||||||||||||||    
T  9994360 ttacaaatatgctcttgactacttcctaaaatggccactggatccctcctatattaa 9994416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 83
Target Start/End: Original strand, 9994246 - 9994316
Alignment:
Q  13 gagatgaaaaacaacataacaattattagaatccatatcagaatttcaatatcccttatatatttatataa 83  Q
    |||| |||||||||||  |||||| ||||||||| |||||||||||||||| || |||| | |||||||||    
T  9994246 gagaagaaaaacaacagcacaattgttagaatccttatcagaatttcaataacctttatctctttatataa 9994316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 162 - 204
Target Start/End: Complemental strand, 41005710 - 41005668
Alignment:
Q  162 tgaatctaaaatgttgatttttgcttataatagataatgacca 204  Q
    |||||||||||||||||||||| ||||||||| ||||||||||    
T  41005710 tgaatctaaaatgttgatttttacttataataaataatgacca 41005668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 162 - 194
Target Start/End: Original strand, 10437735 - 10437767
Alignment:
Q  162 tgaatctaaaatgttgatttttgcttataatag 194  Q
    |||||||||||||||||||||||||||||||||    
T  10437735 tgaatctaaaatgttgatttttgcttataatag 10437767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 194
Target Start/End: Complemental strand, 3100447 - 3100415
Alignment:
Q  162 tgaatctaaaatgttgatttttgcttataatag 194  Q
    ||||||||||||||| |||||||||||||||||    
T  3100447 tgaatctaaaatgttaatttttgcttataatag 3100415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 190
Target Start/End: Complemental strand, 11795778 - 11795750
Alignment:
Q  162 tgaatctaaaatgttgatttttgcttata 190  Q
    |||||||||||||||||||||||||||||    
T  11795778 tgaatctaaaatgttgatttttgcttata 11795750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 194
Target Start/End: Complemental strand, 14772590 - 14772558
Alignment:
Q  162 tgaatctaaaatgttgatttttgcttataatag 194  Q
    |||| ||||||||||||||||||||||||||||    
T  14772590 tgaacctaaaatgttgatttttgcttataatag 14772558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 194
Target Start/End: Original strand, 15549423 - 15549455
Alignment:
Q  162 tgaatctaaaatgttgatttttgcttataatag 194  Q
    ||||||||||||||||||||||| |||||||||    
T  15549423 tgaatctaaaatgttgatttttgtttataatag 15549455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 194
Target Start/End: Original strand, 18652863 - 18652895
Alignment:
Q  162 tgaatctaaaatgttgatttttgcttataatag 194  Q
    ||||||||||||||||||||||| |||||||||    
T  18652863 tgaatctaaaatgttgatttttgtttataatag 18652895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 194
Target Start/End: Original strand, 26045317 - 26045349
Alignment:
Q  162 tgaatctaaaatgttgatttttgcttataatag 194  Q
    ||||||||||||||||||||||| |||||||||    
T  26045317 tgaatctaaaatgttgatttttgtttataatag 26045349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 194
Target Start/End: Complemental strand, 28518760 - 28518728
Alignment:
Q  162 tgaatctaaaatgttgatttttgcttataatag 194  Q
    |||||| ||||||||||||||||||||||||||    
T  28518760 tgaatccaaaatgttgatttttgcttataatag 28518728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 194
Target Start/End: Original strand, 37067863 - 37067895
Alignment:
Q  162 tgaatctaaaatgttgatttttgcttataatag 194  Q
    |||||||||||||| ||||||||||||||||||    
T  37067863 tgaatctaaaatgtagatttttgcttataatag 37067895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 194
Target Start/End: Complemental strand, 43117428 - 43117396
Alignment:
Q  162 tgaatctaaaatgttgatttttgcttataatag 194  Q
    |||||||||||| ||||||||||||||||||||    
T  43117428 tgaatctaaaatattgatttttgcttataatag 43117396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 160 - 194
Target Start/End: Original strand, 52215976 - 52216010
Alignment:
Q  160 agtgaatctaaaatgttgatttttgcttataatag 194  Q
    |||||||||||||||||||||||||||||||||||    
T  52215976 agtgaatctaaaatgttgatttttgcttataatag 52216010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 162 - 194
Target Start/End: Complemental strand, 54595832 - 54595800
Alignment:
Q  162 tgaatctaaaatgttgatttttgcttataatag 194  Q
    |||||||||||||||||||||||||||||||||    
T  54595832 tgaatctaaaatgttgatttttgcttataatag 54595800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 194
Target Start/End: Complemental strand, 39911171 - 39911141
Alignment:
Q  164 aatctaaaatgttgatttttgcttataatag 194  Q
    |||||||||||||||||||||||||||||||    
T  39911171 aatctaaaatgttgatttttgcttataatag 39911141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 194
Target Start/End: Original strand, 331896 - 331928
Alignment:
Q  162 tgaatctaaaatgttgatttttgcttataatag 194  Q
    ||||||||||||||| |||||||||||||||||    
T  331896 tgaatctaaaatgttaatttttgcttataatag 331928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 194
Target Start/End: Complemental strand, 7882323 - 7882291
Alignment:
Q  162 tgaatctaaaatgttgatttttgcttataatag 194  Q
    ||||||||||||||| |||||||||||||||||    
T  7882323 tgaatctaaaatgttaatttttgcttataatag 7882291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 194
Target Start/End: Complemental strand, 8504892 - 8504860
Alignment:
Q  162 tgaatctaaaatgttgatttttgcttataatag 194  Q
    |||||||||||||| ||||||||||||||||||    
T  8504892 tgaatctaaaatgtagatttttgcttataatag 8504860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 194
Target Start/End: Complemental strand, 21217208 - 21217176
Alignment:
Q  162 tgaatctaaaatgttgatttttgcttataatag 194  Q
    |||||||||||||| ||||||||||||||||||    
T  21217208 tgaatctaaaatgtagatttttgcttataatag 21217176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 194
Target Start/End: Original strand, 23642855 - 23642887
Alignment:
Q  162 tgaatctaaaatgttgatttttgcttataatag 194  Q
    |||||||||||| ||||||||||||||||||||    
T  23642855 tgaatctaaaatattgatttttgcttataatag 23642887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 194
Target Start/End: Complemental strand, 24075489 - 24075457
Alignment:
Q  162 tgaatctaaaatgttgatttttgcttataatag 194  Q
    |||||||||||||||| ||||||||||||||||    
T  24075489 tgaatctaaaatgttgttttttgcttataatag 24075457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 194
Target Start/End: Original strand, 24075543 - 24075575
Alignment:
Q  162 tgaatctaaaatgttgatttttgcttataatag 194  Q
    |||||||||||||| ||||||||||||||||||    
T  24075543 tgaatctaaaatgtagatttttgcttataatag 24075575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 190
Target Start/End: Complemental strand, 24694270 - 24694242
Alignment:
Q  162 tgaatctaaaatgttgatttttgcttata 190  Q
    |||||||||||||||||||||||||||||    
T  24694270 tgaatctaaaatgttgatttttgcttata 24694242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 194
Target Start/End: Original strand, 30519696 - 30519728
Alignment:
Q  162 tgaatctaaaatgttgatttttgcttataatag 194  Q
    |||||||||||||||| ||||||||||||||||    
T  30519696 tgaatctaaaatgttggtttttgcttataatag 30519728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 194
Target Start/End: Original strand, 37897780 - 37897812
Alignment:
Q  162 tgaatctaaaatgttgatttttgcttataatag 194  Q
    ||||| |||||||||||||||||||||||||||    
T  37897780 tgaatttaaaatgttgatttttgcttataatag 37897812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 194
Target Start/End: Original strand, 39579591 - 39579623
Alignment:
Q  162 tgaatctaaaatgttgatttttgcttataatag 194  Q
    ||||||||||| |||||||||||||||||||||    
T  39579591 tgaatctaaaaagttgatttttgcttataatag 39579623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 165 - 193
Target Start/End: Original strand, 41254032 - 41254060
Alignment:
Q  165 atctaaaatgttgatttttgcttataata 193  Q
    |||||||||||||||||||||||||||||    
T  41254032 atctaaaatgttgatttttgcttataata 41254060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 162 - 220
Target Start/End: Complemental strand, 12104787 - 12104733
Alignment:
Q  162 tgaatctaaaatgttgatttttgcttataatagataatgaccagaagatgtaaattaca 220  Q
    ||||| |||||||||||||||||||||||||||    ||||| ||||||||||||||||    
T  12104787 tgaatttaaaatgttgatttttgcttataatag----tgaccggaagatgtaaattaca 12104733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 162 - 194
Target Start/End: Original strand, 34379833 - 34379865
Alignment:
Q  162 tgaatctaaaatgttgatttttgcttataatag 194  Q
    |||||||||||||||||||||||||||||||||    
T  34379833 tgaatctaaaatgttgatttttgcttataatag 34379865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 194
Target Start/End: Complemental strand, 26527229 - 26527200
Alignment:
Q  165 atctaaaatgttgatttttgcttataatag 194  Q
    ||||||||||||||||||||||||||||||    
T  26527229 atctaaaatgttgatttttgcttataatag 26527200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 194
Target Start/End: Complemental strand, 4329718 - 4329686
Alignment:
Q  162 tgaatctaaaatgttgatttttgcttataatag 194  Q
    |||||||| ||||||||||||||||||||||||    
T  4329718 tgaatctagaatgttgatttttgcttataatag 4329686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 194
Target Start/End: Complemental strand, 12218487 - 12218455
Alignment:
Q  162 tgaatctaaaatgttgatttttgcttataatag 194  Q
    ||||| |||||||||||||||||||||||||||    
T  12218487 tgaatataaaatgttgatttttgcttataatag 12218455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 194
Target Start/End: Original strand, 16121063 - 16121095
Alignment:
Q  162 tgaatctaaaatgttgatttttgcttataatag 194  Q
    ||||||||||| |||||||||||||||||||||    
T  16121063 tgaatctaaaaagttgatttttgcttataatag 16121095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 194
Target Start/End: Original strand, 26527288 - 26527320
Alignment:
Q  162 tgaatctaaaatgttgatttttgcttataatag 194  Q
    ||||||||||||||| |||||||||||||||||    
T  26527288 tgaatctaaaatgttaatttttgcttataatag 26527320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 194
Target Start/End: Original strand, 28555045 - 28555077
Alignment:
Q  162 tgaatctaaaatgttgatttttgcttataatag 194  Q
    |||||||||||||| ||||||||||||||||||    
T  28555045 tgaatctaaaatgtagatttttgcttataatag 28555077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 194
Target Start/End: Complemental strand, 31714577 - 31714545
Alignment:
Q  162 tgaatctaaaatgttgatttttgcttataatag 194  Q
    |||| ||||||||||||||||||||||||||||    
T  31714577 tgaaactaaaatgttgatttttgcttataatag 31714545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 194
Target Start/End: Original strand, 31996597 - 31996629
Alignment:
Q  162 tgaatctaaaatgttgatttttgcttataatag 194  Q
    |||| ||||||||||||||||||||||||||||    
T  31996597 tgaacctaaaatgttgatttttgcttataatag 31996629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 194
Target Start/End: Complemental strand, 34170120 - 34170088
Alignment:
Q  162 tgaatctaaaatgttgatttttgcttataatag 194  Q
    ||||||||||||||||||||||| |||||||||    
T  34170120 tgaatctaaaatgttgatttttgtttataatag 34170088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 162 - 194
Target Start/End: Original strand, 10934701 - 10934733
Alignment:
Q  162 tgaatctaaaatgttgatttttgcttataatag 194  Q
    |||||||||||||||||||||||||||||||||    
T  10934701 tgaatctaaaatgttgatttttgcttataatag 10934733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 162 - 193
Target Start/End: Original strand, 7484715 - 7484746
Alignment:
Q  162 tgaatctaaaatgttgatttttgcttataata 193  Q
    ||||||||||||||||||||||||||||||||    
T  7484715 tgaatctaaaatgttgatttttgcttataata 7484746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 194
Target Start/End: Original strand, 24017818 - 24017848
Alignment:
Q  164 aatctaaaatgttgatttttgcttataatag 194  Q
    |||||||||||||||||||||||||||||||    
T  24017818 aatctaaaatgttgatttttgcttataatag 24017848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 194
Target Start/End: Complemental strand, 11295703 - 11295674
Alignment:
Q  165 atctaaaatgttgatttttgcttataatag 194  Q
    ||||||||||||||||||||||||||||||    
T  11295703 atctaaaatgttgatttttgcttataatag 11295674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 194
Target Start/End: Complemental strand, 13964461 - 13964429
Alignment:
Q  162 tgaatctaaaatgttgatttttgcttataatag 194  Q
    ||||| |||||||||||||||||||||||||||    
T  13964461 tgaatttaaaatgttgatttttgcttataatag 13964429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 165 - 193
Target Start/End: Original strand, 27503002 - 27503030
Alignment:
Q  165 atctaaaatgttgatttttgcttataata 193  Q
    |||||||||||||||||||||||||||||    
T  27503002 atctaaaatgttgatttttgcttataata 27503030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 162 - 194
Target Start/End: Complemental strand, 2943254 - 2943222
Alignment:
Q  162 tgaatctaaaatgttgatttttgcttataatag 194  Q
    |||||||||||||||||||||||||||||||||    
T  2943254 tgaatctaaaatgttgatttttgcttataatag 2943222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 162 - 194
Target Start/End: Complemental strand, 23818466 - 23818434
Alignment:
Q  162 tgaatctaaaatgttgatttttgcttataatag 194  Q
    |||||||||||||||||||||||||||||||||    
T  23818466 tgaatctaaaatgttgatttttgcttataatag 23818434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 162 - 194
Target Start/End: Original strand, 25245241 - 25245273
Alignment:
Q  162 tgaatctaaaatgttgatttttgcttataatag 194  Q
    |||||||||||||||||||||||||||||||||    
T  25245241 tgaatctaaaatgttgatttttgcttataatag 25245273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 162 - 193
Target Start/End: Complemental strand, 27330548 - 27330517
Alignment:
Q  162 tgaatctaaaatgttgatttttgcttataata 193  Q
    ||||||||||||||||||||||||||||||||    
T  27330548 tgaatctaaaatgttgatttttgcttataata 27330517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 194
Target Start/End: Complemental strand, 7701230 - 7701198
Alignment:
Q  162 tgaatctaaaatgttgatttttgcttataatag 194  Q
    |||||||||||||| ||||||||||||||||||    
T  7701230 tgaatctaaaatgtagatttttgcttataatag 7701198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 194
Target Start/End: Original strand, 8447815 - 8447847
Alignment:
Q  162 tgaatctaaaatgttgatttttgcttataatag 194  Q
    |||||||||||||| ||||||||||||||||||    
T  8447815 tgaatctaaaatgtagatttttgcttataatag 8447847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 194
Target Start/End: Complemental strand, 10095761 - 10095729
Alignment:
Q  162 tgaatctaaaatgttgatttttgcttataatag 194  Q
    ||||||||||||||| |||||||||||||||||    
T  10095761 tgaatctaaaatgttaatttttgcttataatag 10095729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 194
Target Start/End: Original strand, 13797678 - 13797710
Alignment:
Q  162 tgaatctaaaatgttgatttttgcttataatag 194  Q
    |||||||||||||||||||||||| ||||||||    
T  13797678 tgaatctaaaatgttgatttttgcatataatag 13797710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 194
Target Start/End: Original strand, 31115707 - 31115739
Alignment:
Q  162 tgaatctaaaatgttgatttttgcttataatag 194  Q
    |||| ||||||||||||||||||||||||||||    
T  31115707 tgaagctaaaatgttgatttttgcttataatag 31115739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 162 - 194
Target Start/End: Original strand, 14967323 - 14967355
Alignment:
Q  162 tgaatctaaaatgttgatttttgcttataatag 194  Q
    |||||||||||||||||||||||||||||||||    
T  14967323 tgaatctaaaatgttgatttttgcttataatag 14967355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 162 - 194
Target Start/End: Original strand, 24981939 - 24981971
Alignment:
Q  162 tgaatctaaaatgttgatttttgcttataatag 194  Q
    |||||||||||||||||||||||||||||||||    
T  24981939 tgaatctaaaatgttgatttttgcttataatag 24981971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 162 - 192
Target Start/End: Original strand, 33765885 - 33765915
Alignment:
Q  162 tgaatctaaaatgttgatttttgcttataat 192  Q
    |||||||||||||||||||||||||||||||    
T  33765885 tgaatctaaaatgttgatttttgcttataat 33765915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 194
Target Start/End: Complemental strand, 3549821 - 3549789
Alignment:
Q  162 tgaatctaaaatgttgatttttgcttataatag 194  Q
    |||||||||||||| ||||||||||||||||||    
T  3549821 tgaatctaaaatgtagatttttgcttataatag 3549789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 194
Target Start/End: Complemental strand, 8338717 - 8338685
Alignment:
Q  162 tgaatctaaaatgttgatttttgcttataatag 194  Q
    |||||||||||||| ||||||||||||||||||    
T  8338717 tgaatctaaaatgtagatttttgcttataatag 8338685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 194
Target Start/End: Original strand, 9101082 - 9101114
Alignment:
Q  162 tgaatctaaaatgttgatttttgcttataatag 194  Q
    |||||| ||||||||||||||||||||||||||    
T  9101082 tgaatccaaaatgttgatttttgcttataatag 9101114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 194
Target Start/End: Original strand, 28038925 - 28038957
Alignment:
Q  162 tgaatctaaaatgttgatttttgcttataatag 194  Q
    ||||||||||| |||||||||||||||||||||    
T  28038925 tgaatctaaaaagttgatttttgcttataatag 28038957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 165 - 193
Target Start/End: Original strand, 39420410 - 39420438
Alignment:
Q  165 atctaaaatgttgatttttgcttataata 193  Q
    |||||||||||||||||||||||||||||    
T  39420410 atctaaaatgttgatttttgcttataata 39420438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 194
Target Start/End: Original strand, 41007775 - 41007807
Alignment:
Q  162 tgaatctaaaatgttgatttttgcttataatag 194  Q
    ||||||||||||||||| |||||||||||||||    
T  41007775 tgaatctaaaatgttgaattttgcttataatag 41007807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 194
Target Start/End: Original strand, 45115268 - 45115300
Alignment:
Q  162 tgaatctaaaatgttgatttttgcttataatag 194  Q
    |||||||||||||| ||||||||||||||||||    
T  45115268 tgaatctaaaatgtagatttttgcttataatag 45115300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 163 - 193
Target Start/End: Complemental strand, 89639 - 89609
Alignment:
Q  163 gaatctaaaatgttgatttttgcttataata 193  Q
    |||||||||||||||||||||||||||||||    
T  89639 gaatctaaaatgttgatttttgcttataata 89609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 194
Target Start/End: Original strand, 484034 - 484064
Alignment:
Q  164 aatctaaaatgttgatttttgcttataatag 194  Q
    |||||||||||||||||||||||||||||||    
T  484034 aatctaaaatgttgatttttgcttataatag 484064  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 193
Target Start/End: Original strand, 39533856 - 39533885
Alignment:
Q  164 aatctaaaatgttgatttttgcttataata 193  Q
    ||||||||||||||||||||||||||||||    
T  39533856 aatctaaaatgttgatttttgcttataata 39533885  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 194
Target Start/End: Complemental strand, 14450999 - 14450967
Alignment:
Q  162 tgaatctaaaatgttgatttttgcttataatag 194  Q
    |||||||||||||| ||||||||||||||||||    
T  14450999 tgaatctaaaatgtagatttttgcttataatag 14450967  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 194
Target Start/End: Original strand, 18488618 - 18488650
Alignment:
Q  162 tgaatctaaaatgttgatttttgcttataatag 194  Q
    |||||||||||||| ||||||||||||||||||    
T  18488618 tgaatctaaaatgtcgatttttgcttataatag 18488650  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 194
Target Start/End: Complemental strand, 21142132 - 21142100
Alignment:
Q  162 tgaatctaaaatgttgatttttgcttataatag 194  Q
    ||||||||||||||||||||||| |||||||||    
T  21142132 tgaatctaaaatgttgatttttgtttataatag 21142100  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 194
Target Start/End: Complemental strand, 32588146 - 32588114
Alignment:
Q  162 tgaatctaaaatgttgatttttgcttataatag 194  Q
    ||||||||||||||||||||||| |||||||||    
T  32588146 tgaatctaaaatgttgatttttgattataatag 32588114  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 194
Target Start/End: Complemental strand, 36786192 - 36786160
Alignment:
Q  162 tgaatctaaaatgttgatttttgcttataatag 194  Q
    ||||||||||||||||||||||| |||||||||    
T  36786192 tgaatctaaaatgttgatttttgtttataatag 36786160  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 194
Target Start/End: Complemental strand, 40952390 - 40952358
Alignment:
Q  162 tgaatctaaaatgttgatttttgcttataatag 194  Q
    ||||||||||||||||||| |||||||||||||    
T  40952390 tgaatctaaaatgttgattattgcttataatag 40952358  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 194
Target Start/End: Original strand, 44549330 - 44549362
Alignment:
Q  162 tgaatctaaaatgttgatttttgcttataatag 194  Q
    |||||||||||||||||||||| ||||||||||    
T  44549330 tgaatctaaaatgttgatttttacttataatag 44549362  T

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Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 194
Target Start/End: Complemental strand, 47308156 - 47308124
Alignment:
Q  162 tgaatctaaaatgttgatttttgcttataatag 194  Q
    |||||| ||||||||||||||||||||||||||    
T  47308156 tgaatccaaaatgttgatttttgcttataatag 47308124  T

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Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 194
Target Start/End: Original strand, 55936085 - 55936117
Alignment:
Q  162 tgaatctaaaatgttgatttttgcttataatag 194  Q
    |||||||||||| ||||||||||||||||||||    
T  55936085 tgaatctaaaatattgatttttgcttataatag 55936117  T

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Target: scaffold0009 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 194
Target Start/End: Original strand, 7755 - 7787
Alignment:
Q  162 tgaatctaaaatgttgatttttgcttataatag 194  Q
    |||||||||||||| ||||||||||||||||||    
T  7755 tgaatctaaaatgtagatttttgcttataatag 7787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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