View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17064_high_3 (Length: 518)

Name: NF17064_high_3
Description: NF17064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17064_high_3
NF17064_high_3
[»] chr8 (15 HSPs)
chr8 (18-502)||(5887144-5887628)
chr8 (296-481)||(5984557-5984742)
chr8 (296-481)||(5949029-5949214)
chr8 (304-502)||(5843005-5843203)
chr8 (304-502)||(5849747-5849945)
chr8 (296-466)||(5921152-5921322)
chr8 (296-477)||(5960298-5960479)
chr8 (17-153)||(5843308-5843444)
chr8 (17-153)||(5850050-5850186)
chr8 (18-151)||(5921386-5921516)
chr8 (18-151)||(5984806-5984936)
chr8 (18-151)||(5949278-5949408)
chr8 (18-151)||(5960544-5960674)
chr8 (331-404)||(39916637-39916710)
chr8 (41-91)||(41351576-41351626)
[»] chr2 (3 HSPs)
chr2 (325-458)||(42788930-42789063)
chr2 (19-113)||(42789098-42789192)
chr2 (325-361)||(27172818-27172854)
[»] chr7 (2 HSPs)
chr7 (321-386)||(45676080-45676145)
chr7 (331-377)||(48892630-48892676)
[»] chr3 (2 HSPs)
chr3 (331-381)||(44674039-44674089)
chr3 (326-386)||(34626700-34626760)
[»] chr5 (2 HSPs)
chr5 (331-381)||(1281333-1281383)
chr5 (41-98)||(2590612-2590669)
[»] chr1 (2 HSPs)
chr1 (331-381)||(16127411-16127461)
chr1 (321-387)||(37962858-37962924)
[»] chr4 (1 HSPs)
chr4 (331-383)||(43560551-43560603)


Alignment Details
Target: chr8 (Bit Score: 364; Significance: 0; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 18 - 502
Target Start/End: Complemental strand, 5887628 - 5887144
Alignment:
Q  18 acatcactcttgctgtaacaaggagaaggtcaacagaggactatggtcacctgaagaagatgaaaaactcatcaaatacatcacaacttatggacaagat 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  5887628 acatcactcttgctgtaacaaggagaaggtcaacagaggactatggtcacctgaagaagatgaaaagctcatcaaatacatcacaacttatggacaagat 5887529  T
Q  118 tgctgctggagctctgtcccaaaacttgctggtactgnnnnnnnttcttaaccactatacnnnnnnnnaagtgtgctttattatttcattaagtatatag 217  Q
    ||||||||||||||||| |||||||||||||||||||       ||||||||||||||||        |||||||||||| |||||||||||||||||||    
T  5887528 tgctgctggagctctgtaccaaaacttgctggtactgaaaaaaattcttaaccactatacttttttttaagtgtgctttactatttcattaagtatatag 5887429  T
Q  218 ttccctnnnnnnnnnntcttattaaacatatcttatacaatactatagttctctaaattaataaatt--cgtattttatgttcatttatatatcatgatg 315  Q
    ||||||          |||| ||||||||||||||||||||||||||||||||||||||||||||||  | ||||||||| |||||||||||||||||||    
T  5887428 ttccctaaaaaaaa--tcttgttaaacatatcttatacaatactatagttctctaaattaataaattttcttattttatgatcatttatatatcatgatg 5887331  T
Q  316 tgtgtaggtctgcagagatgtggaaagagttgcagattaagatggataaattatctaagacctgatttgaaacgtggaagtttctctcatcaagaagtag 415  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5887330 tgtgtaggtctgcagagatgcggaaagagttgcagattaagatggataaattatctaagacctgatttgaaacgtggaagtttctctcatcaagaagtag 5887231  T
Q  416 cactcattgtagaactacacagcattctaggcaataggtatatccattacaatagctctttttcttttcctccgatgtgcttttcat 502  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5887230 cactcattgtagaactacacaacattctaggcaataggtatatccattacaatagctctttttcttttcctccgatgtgcttttcat 5887144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 296 - 481
Target Start/End: Complemental strand, 5984742 - 5984557
Alignment:
Q  296 ttcatttatatatcatgatgtgtgtaggtctgcagagatgtggaaagagttgcagattaagatggataaattatctaagacctgatttgaaacgtggaag 395  Q
    ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5984742 ttcatttgtatatcatgatatgtgtaggtctgcagagatgtggaaagagttgcagattaagatggataaattatctaagacctgatttgaaacgtggaag 5984643  T
Q  396 tttctctcatcaagaagtagcactcattgtagaactacacagcattctaggcaataggtatatccattacaatagctctttttctt 481  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||| ||||||    
T  5984642 tttctctcatcaagaagtagcactcattgtagaactacacaacattctaggcaataggtatattcattacattagctctctttctt 5984557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 158; E-Value: 8e-84
Query Start/End: Original strand, 296 - 481
Target Start/End: Complemental strand, 5949214 - 5949029
Alignment:
Q  296 ttcatttatatatcatgatgtgtgtaggtctgcagagatgtggaaagagttgcagattaagatggataaattatctaagacctgatttgaaacgtggaag 395  Q
    ||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  5949214 ttcatttgtatatcatgatatgtgtaggtctgcagagatgtggaaagagttgaagattaagatggataaattatctaagacctgatttgaaacgtggaag 5949115  T
Q  396 tttctctcatcaagaagtagcactcattgtagaactacacagcattctaggcaataggtatatccattacaatagctctttttctt 481  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||| ||||||    
T  5949114 tttctctcatcaagaagtagcactcattgtagaactacacaacattctaggcaataggtatattcattacattagctctctttctt 5949029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 304 - 502
Target Start/End: Complemental strand, 5843203 - 5843005
Alignment:
Q  304 tatatcatgatgtgtgtaggtctgcagagatgtggaaagagttgcagattaagatggataaattatctaagacctgatttgaaacgtggaagtttctctc 403  Q
    ||||||||||||||| |||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||     
T  5843203 tatatcatgatgtgtctaggtctgcagagatgtggaaaaagttgtagattaagatggataaattatctaagacctgatttaaaacgtggaagtttctctt 5843104  T
Q  404 atcaagaagtagcactcattgtagaactacacagcattctaggcaataggtatatccattacaatagctctttttcttttcctccgatgtgcttttcat 502  Q
    || ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||  |||||||    
T  5843103 atgaagaagtagcaatcattatagaactacacagcattctaggcaataggtatatccattacaatagctcttcttcttttcctccaatgttattttcat 5843005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 304 - 502
Target Start/End: Complemental strand, 5849945 - 5849747
Alignment:
Q  304 tatatcatgatgtgtgtaggtctgcagagatgtggaaagagttgcagattaagatggataaattatctaagacctgatttgaaacgtggaagtttctctc 403  Q
    ||||||||||| ||| |||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  5849945 tatatcatgatatgtctaggtctgcagagatgtggaaaaagttgtagattaagatggataaattatctaagacctgatttgaaacgtggaagtttctctt 5849846  T
Q  404 atcaagaagtagcactcattgtagaactacacagcattctaggcaataggtatatccattacaatagctctttttcttttcctccgatgtgcttttcat 502  Q
    || ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| ||||  |||||||    
T  5849845 atgaagaagtagcaatcattatagaactacacagcattctaggcaataggtatatccattacaattgctcttcttcttttcctccaatgttattttcat 5849747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 296 - 466
Target Start/End: Complemental strand, 5921322 - 5921152
Alignment:
Q  296 ttcatttatatatcatgatgtgtgtaggtctgcagagatgtggaaagagttgcagattaagatggataaattatctaagacctgatttgaaacgtggaag 395  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5921322 ttcatttgtatatcatgatgtgtgtaggtctgcagagatgtggaaagagttgcagattaagatggataaattatctaagacctgatttgaaacgtggaag 5921223  T
Q  396 tttctctcatcaagaagtagcactcattgtagaactacacagcattctaggcaataggtatatccattaca 466  Q
    |||||||||||||||||  ||||||||| ||||||| |||||||||||||||||||||||||| |||||||    
T  5921222 tttctctcatcaagaagctgcactcattctagaactccacagcattctaggcaataggtatattcattaca 5921152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 296 - 477
Target Start/End: Complemental strand, 5960479 - 5960298
Alignment:
Q  296 ttcatttatatatcatgatgtgtgtaggtctgcagagatgtggaaagagttgcagattaagatggataaattatctaagacctgatttgaaacgtggaag 395  Q
    ||||||| |||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  5960479 ttcatttgtatatcatgatgtgtgtaggtctggagagatgtggaaagagttgtagattaagatggataaattatctaagacctgatttgaaacgtggaag 5960380  T
Q  396 tttctctcatcaagaagtagcactcattgtagaactacacagcattctaggcaataggtatatccattacaatagctctttt 477  Q
    ||||||||| |||||||||||||||||||||||||| |||| |||| |||||||||||||||| ||||||| ||||||||||    
T  5960379 tttctctcaacaagaagtagcactcattgtagaactccacaacattttaggcaataggtatattcattacattagctctttt 5960298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 17 - 153
Target Start/End: Complemental strand, 5843444 - 5843308
Alignment:
Q  17 cacatcactcttgctgtaacaaggagaaggtcaacagaggactatggtcacctgaagaagatgaaaaactcatcaaatacatcacaacttatggacaaga 116  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5843444 cacatcactcttgctgtagcaaggagaaggtcaacagaggactatggtcacctgaagaagatgaaaaactcatcaaatacatcacaacttatggacaaga 5843345  T
Q  117 ttgctgctggagctctgtcccaaaacttgctggtact 153  Q
    |||||||||||| ||||||||||||||||||||||||    
T  5843344 ttgctgctggagttctgtcccaaaacttgctggtact 5843308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 17 - 153
Target Start/End: Complemental strand, 5850186 - 5850050
Alignment:
Q  17 cacatcactcttgctgtaacaaggagaaggtcaacagaggactatggtcacctgaagaagatgaaaaactcatcaaatacatcacaacttatggacaaga 116  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5850186 cacatcactcttgctgtagcaaggagaaggtcaacagaggactatggtcacctgaagaagatgaaaaactcatcaaatacatcacaacttatggacaaga 5850087  T
Q  117 ttgctgctggagctctgtcccaaaacttgctggtact 153  Q
    |||||||||||| ||||||||||||||||||||||||    
T  5850086 ttgctgctggagttctgtcccaaaacttgctggtact 5850050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 18 - 151
Target Start/End: Complemental strand, 5921516 - 5921386
Alignment:
Q  18 acatcactcttgctgtaacaaggagaaggtcaacagaggactatggtcacctgaagaagatgaaaaactcatcaaatacatcacaacttatggacaagat 117  Q
    |||||||||||| || |||||  ||||||| || |||||| ||||||||||||||||||||||||||||||||||||| || ||||| |||||||   ||    
T  5921516 acatcactcttgttgcaacaaacagaaggttaaaagaggattatggtcacctgaagaagatgaaaaactcatcaaatatattacaacatatggac---at 5921420  T
Q  118 tgctgctggagctctgtcccaaaacttgctggta 151  Q
     | || ||||| ||||| ||||||||||||||||    
T  5921419 ggttgttggagttctgttccaaaacttgctggta 5921386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 18 - 151
Target Start/End: Complemental strand, 5984936 - 5984806
Alignment:
Q  18 acatcactcttgctgtaacaaggagaaggtcaacagaggactatggtcacctgaagaagatgaaaaactcatcaaatacatcacaacttatggacaagat 117  Q
    |||||||||||| || |||||  ||||||| || |||||| ||||||||||||||||||||||||||||||||||||| || ||||| |||||||   ||    
T  5984936 acatcactcttgttgcaacaaacagaaggttaaaagaggattatggtcacctgaagaagatgaaaaactcatcaaatatattacaacatatggac---at 5984840  T
Q  118 tgctgctggagctctgtcccaaaacttgctggta 151  Q
     | || ||||| ||||| ||||||||||||||||    
T  5984839 ggttgttggagttctgttccaaaacttgctggta 5984806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 18 - 151
Target Start/End: Complemental strand, 5949408 - 5949278
Alignment:
Q  18 acatcactcttgctgtaacaaggagaaggtcaacagaggactatggtcacctgaagaagatgaaaaactcatcaaatacatcacaacttatggacaagat 117  Q
    |||||||||||| || |||||  ||||||| || |||||| ||||||||||||||||||||||||||||||||||||| |  ||||| |||||||   ||    
T  5949408 acatcactcttgttgcaacaaacagaaggttaaaagaggattatggtcacctgaagaagatgaaaaactcatcaaatatagtacaacatatggac---at 5949312  T
Q  118 tgctgctggagctctgtcccaaaacttgctggta 151  Q
     | || ||||| ||||| ||||||||||||||||    
T  5949311 ggttgttggagttctgttccaaaacttgctggta 5949278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 18 - 151
Target Start/End: Complemental strand, 5960674 - 5960544
Alignment:
Q  18 acatcactcttgctgtaacaaggagaaggtcaacagaggactatggtcacctgaagaagatgaaaaactcatcaaatacatcacaacttatggacaagat 117  Q
    |||||| ||||| || |||||  ||||||| || |||||| ||||||||||||||||||||||||||||||||||||| || ||||| |||||||   ||    
T  5960674 acatcattcttgttgcaacaaacagaaggttaaaagaggattatggtcacctgaagaagatgaaaaactcatcaaatatattacaacatatggac---at 5960578  T
Q  118 tgctgctggagctctgtcccaaaacttgctggta 151  Q
     | || ||||| ||||| ||||||||||||||||    
T  5960577 ggttgttggagttctgttccaaaacttgctggta 5960544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 331 - 404
Target Start/End: Original strand, 39916637 - 39916710
Alignment:
Q  331 agatgtggaaagagttgcagattaagatggataaattatctaagacctgatttgaaacgtggaagtttctctca 404  Q
    ||||||||||| || |||||||| |||||||| |||||||| ||||||||| | || ||||||| |||| ||||    
T  39916637 agatgtggaaaaagctgcagattgagatggatcaattatctcagacctgatcttaagcgtggaaatttcactca 39916710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 41 - 91
Target Start/End: Complemental strand, 41351626 - 41351576
Alignment:
Q  41 agaaggtcaacagaggactatggtcacctgaagaagatgaaaaactcatca 91  Q
    ||||||| || ||||| || ||||| |||||||||||||||||||||||||    
T  41351626 agaaggttaagagaggtctttggtcccctgaagaagatgaaaaactcatca 41351576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 1e-26; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 325 - 458
Target Start/End: Complemental strand, 42789063 - 42788930
Alignment:
Q  325 ctgcagagatgtggaaagagttgcagattaagatggataaattatctaagacctgatttgaaacgtggaagtttctctcatcaagaagtagcactcattg 424  Q
    ||||||||||||||||| |||||||| || ||||||||||||||| |||||||||||||||||||||||||||| ||||  |||||||  || || |||     
T  42789063 ctgcagagatgtggaaaaagttgcaggttgagatggataaattatttaagacctgatttgaaacgtggaagtttttctccacaagaagctgctcttatta 42788964  T
Q  425 tagaactacacagcattctaggcaataggtatat 458  Q
    | ||||| || | ||||||||| || ||||||||    
T  42788963 ttgaacttcataccattctaggaaacaggtatat 42788930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 19 - 113
Target Start/End: Complemental strand, 42789192 - 42789098
Alignment:
Q  19 catcactcttgctgtaacaaggagaaggtcaacagaggactatggtcacctgaagaagatgaaaaactcatcaaatacatcacaacttatggaca 113  Q
    |||||||||||||| || ||  ||||||| || ||||||||||||||||| ||||||||||||||||||||||| |||||||| | |||||||||    
T  42789192 catcactcttgctgcaataaacagaaggtgaaaagaggactatggtcaccagaagaagatgaaaaactcatcaactacatcactaattatggaca 42789098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 325 - 361
Target Start/End: Complemental strand, 27172854 - 27172818
Alignment:
Q  325 ctgcagagatgtggaaagagttgcagattaagatgga 361  Q
    ||||| |||||||||||||||||||||||||||||||    
T  27172854 ctgcaaagatgtggaaagagttgcagattaagatgga 27172818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 321 - 386
Target Start/End: Complemental strand, 45676145 - 45676080
Alignment:
Q  321 aggtctgcagagatgtggaaagagttgcagattaagatggataaattatctaagacctgatttgaa 386  Q
    |||| ||||||| ||||| |||||||| ||||| |||||||||||||||||||| |||||||||||    
T  45676145 aggtttgcagaggtgtgggaagagttgtagattgagatggataaattatctaaggcctgatttgaa 45676080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 331 - 377
Target Start/End: Complemental strand, 48892676 - 48892630
Alignment:
Q  331 agatgtggaaagagttgcagattaagatggataaattatctaagacc 377  Q
    ||||||||||| ||||||||| |||||||||| || |||||||||||    
T  48892676 agatgtggaaaaagttgcagactaagatggatgaactatctaagacc 48892630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 331 - 381
Target Start/End: Original strand, 44674039 - 44674089
Alignment:
Q  331 agatgtggaaagagttgcagattaagatggataaattatctaagacctgat 381  Q
    |||||||| |||||||||||||| |||||||||||||| ||||||||||||    
T  44674039 agatgtggcaagagttgcagattgagatggataaattacctaagacctgat 44674089  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 326 - 386
Target Start/End: Complemental strand, 34626760 - 34626700
Alignment:
Q  326 tgcagagatgtggaaagagttgcagattaagatggataaattatctaagacctgatttgaa 386  Q
    |||| ||||||||||||||||| ||||| |||||||| || ||||| ||||||||||||||    
T  34626760 tgcaaagatgtggaaagagttgtagattgagatggatcaactatctgagacctgatttgaa 34626700  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 331 - 381
Target Start/End: Original strand, 1281333 - 1281383
Alignment:
Q  331 agatgtggaaagagttgcagattaagatggataaattatctaagacctgat 381  Q
    ||||||||||||||||| || |||||||||| ||||||| |||| ||||||    
T  1281333 agatgtggaaagagttgtaggttaagatggacaaattatttaagtcctgat 1281383  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 41 - 98
Target Start/End: Original strand, 2590612 - 2590669
Alignment:
Q  41 agaaggtcaacagaggactatggtcacctgaagaagatgaaaaactcatcaaatacat 98  Q
    ||||||| || ||||| || |||||||||||||||||||| |||||||| | ||||||    
T  2590612 agaaggttaagagaggcctttggtcacctgaagaagatgagaaactcattagatacat 2590669  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 331 - 381
Target Start/End: Complemental strand, 16127461 - 16127411
Alignment:
Q  331 agatgtggaaagagttgcagattaagatggataaattatctaagacctgat 381  Q
    ||||||||||||||||| ||||| |||||||| |||||| ||||| |||||    
T  16127461 agatgtggaaagagttgtagattgagatggattaattatttaagaactgat 16127411  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 321 - 387
Target Start/End: Original strand, 37962858 - 37962924
Alignment:
Q  321 aggtctgcagagatgtggaaagagttgcagattaagatggataaattatctaagacctgatttgaaa 387  Q
    |||| |||| || ||||| ||||||||||| |||||||||||||||||  | || ||||||||||||    
T  37962858 aggtttgcaaaggtgtgggaagagttgcaggttaagatggataaattacttgaggcctgatttgaaa 37962924  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 331 - 383
Target Start/End: Complemental strand, 43560603 - 43560551
Alignment:
Q  331 agatgtggaaagagttgcagattaagatggataaattatctaagacctgattt 383  Q
    ||||||||||||||||| ||||| ||||||||||| ||| | || ||||||||    
T  43560603 agatgtggaaagagttgtagattgagatggataaactatttgaggcctgattt 43560551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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