View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17064_low_13 (Length: 280)
Name: NF17064_low_13
Description: NF17064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17064_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 45393989 - 45393775
Alignment:
| Q |
1 |
acatgctccatcgacactaacatttgaatttcccttcaagttaaacgaaaagagaagcagtttaagaaaaaatgtaccaaaaatagcgatgagaacaccg |
100 |
Q |
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| T |
45393989 |
acatgctccatcgacactaacatttgaatttcccttcaagttaaacgaaaagagaagcagtttaagaaaaaa-gtaccaaaaatagcgatgagaacaccg |
45393891 |
T |
|
| Q |
101 |
cgtccatcatagtgtggatacgaatggaggaaacgatcgacaccaatttccgttttaggcataagagaagccaaaaaagtagactgattgagcttgaagt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45393890 |
cgtccatcatagtgtggatacgaatggaggaaacgatcgacaccaatttccgttttaggcataagagaagccaaaaaagtagactgattgagcttgaagt |
45393791 |
T |
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| Q |
201 |
tgcggagagaagcagt |
216 |
Q |
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|||||||||||||||| |
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| T |
45393790 |
tgcggagagaagcagt |
45393775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 43 - 212
Target Start/End: Complemental strand, 45381598 - 45381428
Alignment:
| Q |
43 |
aaacgaaaagagaagcagtttaag-aaaaaatgtaccaaaaatagcgatgagaacaccgcgtccatcatagtgtggatacgaatggaggaaacgatcgac |
141 |
Q |
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|||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45381598 |
aaacgaaaagagaagcagtttaaggaaaaaaggtaccaaaaatagcgatgagaacaccgcgtccatcatagtgtggatacgaatggaggaaacgatcgac |
45381499 |
T |
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| Q |
142 |
accaatttccgttttaggcataagagaagccaaaaaagtagactgattgagcttgaagttgcggagagaag |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |
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| T |
45381498 |
accaatttccgttttaggcataagagaagccaaaaaagtggactgattgagcttgaagttgcggaaagaag |
45381428 |
T |
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