View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17064_low_14 (Length: 278)
Name: NF17064_low_14
Description: NF17064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17064_low_14 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 18 - 273
Target Start/End: Complemental strand, 28730851 - 28730596
Alignment:
| Q |
18 |
attccatatcataccgaatcgctacttgtcaatcgccgatcttgagaagcttccagttggaactgctctgcctacattggagcgaggtcagccgcttctg |
117 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28730851 |
attccatatcataccgaatcgttacttgtcaatcgccgatcttgagaagcttccagttggaactgctctgcctacattggagcgaggtcagccgcttctg |
28730752 |
T |
|
| Q |
118 |
atcactacttctggtggaggagtgacattagcaccgatgagaattaactatgttagggtgaagtttgctgacgtcatccgtaatgtgaagatagttgtgc |
217 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
28730751 |
atcactacttccggtggaggagtgacattagcaccgatgaggattaactatgttagggtgaaggttgctgacgtcatccgtaatgtgaagatagttgtgc |
28730652 |
T |
|
| Q |
218 |
atagtgtgtatttgccttttccgcatatcaatcctattggggctgcctatgctact |
273 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| || ||| |||| |||| |
|
|
| T |
28730651 |
atagtgtgtatttgccttttccgcatatcaatcctattgcggatgcttatgatact |
28730596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 184; Significance: 1e-99; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 18 - 273
Target Start/End: Original strand, 38608846 - 38609101
Alignment:
| Q |
18 |
attccatatcataccgaatcgctacttgtcaatcgccgatcttgagaagcttccagttggaactgctctgcctacattggagcgaggtcagccgcttctg |
117 |
Q |
| |
|
||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38608846 |
attccatatcataccgaattattacttgtcgatcgccgatcttgagaagcttccagttggaactgctctgcctacattggagcgaggtcagccgcttctg |
38608945 |
T |
|
| Q |
118 |
atcactacttctggtggaggagtgacattagcaccgatgagaattaactatgttagggtgaagtttgctgacgtcatccgtaatgtgaagatagttgtgc |
217 |
Q |
| |
|
||||||||||| || ||||||||||||| ||| |||||||| ||||||||||| || || ||| |||||||||||||||| ||||||||||||||||||| |
|
|
| T |
38608946 |
atcactacttccggcggaggagtgacatcagcgccgatgaggattaactatgtgagagttaaggttgctgacgtcatccgcaatgtgaagatagttgtgc |
38609045 |
T |
|
| Q |
218 |
atagtgtgtatttgccttttccgcatatcaatcctattggggctgcctatgctact |
273 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||| |||||| |||| |||| |
|
|
| T |
38609046 |
acagtgtgtatttgccttttccgcatatcaatcctattgcggctgcttatgatact |
38609101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 18 - 273
Target Start/End: Original strand, 38793629 - 38793884
Alignment:
| Q |
18 |
attccatatcataccgaatcgctacttgtcaatcgccgatcttgagaagcttccagttggaactgctctgcctacattggagcgaggtcagccgcttctg |
117 |
Q |
| |
|
||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38793629 |
attccatatcataccgaattattacttgtcgatcgccgatcttgagaagcttccagttggaactgctctgcctacattggagcgaggtcagccgcttctg |
38793728 |
T |
|
| Q |
118 |
atcactacttctggtggaggagtgacattagcaccgatgagaattaactatgttagggtgaagtttgctgacgtcatccgtaatgtgaagatagttgtgc |
217 |
Q |
| |
|
||||||||||| || ||||||||||||| ||| |||||||| ||||||||||| || || ||| |||||||||||||||| ||||||||||||||||||| |
|
|
| T |
38793729 |
atcactacttccggcggaggagtgacatcagcgccgatgaggattaactatgtgagagttaaggttgctgacgtcatccgcaatgtgaagatagttgtgc |
38793828 |
T |
|
| Q |
218 |
atagtgtgtatttgccttttccgcatatcaatcctattggggctgcctatgctact |
273 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||| |||||| |||| |||| |
|
|
| T |
38793829 |
acagtgtgtatttgccttttccgcatatcaatcctattgcggctgcttatgatact |
38793884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 18 - 273
Target Start/End: Complemental strand, 38121277 - 38121022
Alignment:
| Q |
18 |
attccatatcataccgaatcgctacttgtcaatcgccgatcttgagaagcttccagttggaactgctctgcctacattggagcgaggtcagccgcttctg |
117 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38121277 |
attccatatcataccgaatcattacttgtcaatcgccgatcttgagaagcttccggttggaactgctctgcctacattggagcgaggtcagccgcttctg |
38121178 |
T |
|
| Q |
118 |
atcactacttctggtggaggagtgacattagcaccgatgagaattaactatgttagggtgaagtttgctgacgtcatccgtaatgtgaagatagttgtgc |
217 |
Q |
| |
|
||||||||||| || ||||||||||||| ||| |||||||| ||||||||||| || || ||| |||||||||||||||| ||||||||||| ||||||| |
|
|
| T |
38121177 |
atcactacttccggcggaggagtgacatcagcgccgatgaggattaactatgtgagagttaaggttgctgacgtcatccgcaatgtgaagattgttgtgc |
38121078 |
T |
|
| Q |
218 |
atagtgtgtatttgccttttccgcatatcaatcctattggggctgcctatgctact |
273 |
Q |
| |
|
| || |||||||||||||||||||||||||||||||||| |||||| |||| |||| |
|
|
| T |
38121077 |
acagcgtgtatttgccttttccgcatatcaatcctattgcggctgcttatgatact |
38121022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University