View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17064_low_17 (Length: 255)
Name: NF17064_low_17
Description: NF17064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17064_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 18 - 253
Target Start/End: Complemental strand, 39803448 - 39803213
Alignment:
| Q |
18 |
atttatccatcagacatgcatgcaaatcaaaagataaattataaaaattaggtttaagccaccaaaagactaacattttcacattatcaagtatatgaat |
117 |
Q |
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| T |
39803448 |
atttatccatcagacatgcatgcaaatcaaaagataaattataaaaattaggtttaagccaccaaaagactaacattttcacattatcaagtatatgaat |
39803349 |
T |
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| Q |
118 |
caaaagccctttatcacgaaaaacacaagcatttttctccatccaaatatttcaaacactagcaagtcaattaagacttgcatgtatctctttagagcat |
217 |
Q |
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| T |
39803348 |
caaaagccctttatcacgaaaaaaacaagcatttttctccatccaaatatttcaaacactagcaagtcaattaagacttgcatgtatctctttagagcat |
39803249 |
T |
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| Q |
218 |
aacaccgagccaccaaactgggtagcatgatcagaa |
253 |
Q |
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| T |
39803248 |
aacaccgagccaccaaactgggtagcatgatcagaa |
39803213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 47 - 255
Target Start/End: Complemental strand, 39811358 - 39811147
Alignment:
| Q |
47 |
aaagataaattataaaaattaggtttaagccaccaaaagactaacattttcacattatcaagtatatgaatcaaaagccctttatcacgaaaaacacaag |
146 |
Q |
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| T |
39811358 |
aaagataaattagaataattaggtttaagccaccaaaagactaacattttcaccttatcaa---tatgaatcaaaagccctttatcacgaaaaacacaag |
39811262 |
T |
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| Q |
147 |
catttttctccatccaaatatttcaaacactagcaagtcaatt------aagacttgcatgtatctctttagagcataacaccgagccaccaaactgggt |
240 |
Q |
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| T |
39811261 |
catttttctccgtccaaatacttcaaacatgagcaagtcaattaagatgaagacttgcatgtatctctttagagcacaacactgagccaccaaactgggt |
39811162 |
T |
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| Q |
241 |
agcatgatcagaagc |
255 |
Q |
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| T |
39811161 |
agcatgatcagaagc |
39811147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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