View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17064_low_21 (Length: 227)

Name: NF17064_low_21
Description: NF17064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17064_low_21
NF17064_low_21
[»] chr3 (12 HSPs)
chr3 (87-227)||(28876646-28876786)
chr3 (45-91)||(28876585-28876631)
chr3 (141-178)||(1165265-1165302)
chr3 (141-178)||(3088533-3088570)
chr3 (141-178)||(28995178-28995215)
chr3 (141-178)||(45664429-45664466)
chr3 (188-227)||(913117-913156)
chr3 (141-175)||(43029891-43029925)
chr3 (145-178)||(4019810-4019843)
chr3 (141-174)||(22286624-22286657)
chr3 (141-178)||(47914462-47914499)
chr3 (142-178)||(37051803-37051839)
[»] scaffold0722 (1 HSPs)
scaffold0722 (141-178)||(5395-5432)
[»] scaffold0665 (1 HSPs)
scaffold0665 (141-178)||(996-1033)
[»] scaffold0024 (1 HSPs)
scaffold0024 (141-178)||(36732-36769)
[»] scaffold0012 (1 HSPs)
scaffold0012 (141-178)||(244844-244881)
[»] chr8 (14 HSPs)
chr8 (141-178)||(8054676-8054713)
chr8 (141-178)||(14115697-14115734)
chr8 (141-178)||(16996758-16996795)
chr8 (141-178)||(18190715-18190752)
chr8 (145-178)||(5917618-5917651)
chr8 (184-221)||(10148221-10148258)
chr8 (145-178)||(11298629-11298662)
chr8 (141-178)||(27534281-27534318)
chr8 (141-178)||(32062002-32062039)
chr8 (141-178)||(32412998-32413035)
chr8 (141-178)||(37129544-37129581)
chr8 (141-178)||(41996751-41996788)
chr8 (141-174)||(44295524-44295557)
chr8 (184-224)||(4429331-4429371)
[»] chr7 (16 HSPs)
chr7 (141-178)||(135014-135051)
chr7 (141-178)||(2532149-2532186)
chr7 (141-178)||(23732262-23732299)
chr7 (141-178)||(26017527-26017564)
chr7 (139-179)||(21329166-21329206)
chr7 (141-174)||(7986100-7986133)
chr7 (141-178)||(8611493-8611530)
chr7 (141-178)||(19895553-19895590)
chr7 (141-178)||(21552324-21552361)
chr7 (141-178)||(24470601-24470638)
chr7 (141-178)||(24475549-24475586)
chr7 (141-174)||(37399806-37399839)
chr7 (141-178)||(40775475-40775512)
chr7 (141-178)||(45949548-45949585)
chr7 (184-216)||(41288232-41288264)
chr7 (141-177)||(43807020-43807056)
[»] chr6 (9 HSPs)
chr6 (141-178)||(12576350-12576387)
chr6 (142-178)||(19759997-19760033)
chr6 (188-227)||(5417025-5417064)
chr6 (139-178)||(20845214-20845253)
chr6 (141-179)||(892492-892530)
chr6 (141-178)||(11426149-11426186)
chr6 (141-178)||(23843293-23843330)
chr6 (139-179)||(15127997-15128037)
chr6 (139-175)||(32804501-32804537)
[»] chr5 (10 HSPs)
chr5 (141-178)||(6887047-6887084)
chr5 (141-178)||(28618810-28618847)
chr5 (141-178)||(29310223-29310260)
chr5 (141-178)||(35906477-35906514)
chr5 (139-175)||(31646035-31646071)
chr5 (139-178)||(6074605-6074644)
chr5 (141-178)||(4070759-4070796)
chr5 (141-178)||(20146088-20146125)
chr5 (189-221)||(20270989-20271021)
chr5 (142-178)||(40565026-40565062)
[»] chr4 (15 HSPs)
chr4 (141-178)||(23067717-23067754)
chr4 (141-178)||(46716763-46716800)
chr4 (141-178)||(52555609-52555646)
chr4 (141-178)||(53903789-53903826)
chr4 (188-227)||(15729782-15729821)
chr4 (184-227)||(29589162-29589205)
chr4 (139-174)||(31601229-31601264)
chr4 (139-174)||(42972244-42972279)
chr4 (141-175)||(4634491-4634525)
chr4 (141-178)||(9662061-9662098)
chr4 (141-174)||(14542385-14542418)
chr4 (141-178)||(30469992-30470029)
chr4 (141-178)||(37869286-37869323)
chr4 (142-178)||(33020796-33020832)
chr4 (139-179)||(46386642-46386682)
[»] chr2 (19 HSPs)
chr2 (141-178)||(3390631-3390668)
chr2 (141-178)||(7640225-7640262)
chr2 (141-178)||(35353848-35353885)
chr2 (141-178)||(36508137-36508174)
chr2 (141-178)||(41177066-41177103)
chr2 (141-177)||(20036590-20036626)
chr2 (139-174)||(3603191-3603226)
chr2 (141-175)||(27024011-27024045)
chr2 (141-175)||(43567081-43567115)
chr2 (141-178)||(2251216-2251253)
chr2 (141-178)||(3397848-3397885)
chr2 (141-178)||(3465137-3465174)
chr2 (141-178)||(25516700-25516737)
chr2 (141-178)||(27191206-27191243)
chr2 (141-178)||(27841020-27841057)
chr2 (141-174)||(38822280-38822313)
chr2 (184-224)||(6431213-6431253)
chr2 (139-175)||(29734396-29734432)
chr2 (141-173)||(44951627-44951659)
[»] chr1 (11 HSPs)
chr1 (141-178)||(15276315-15276352)
chr1 (141-178)||(21326681-21326718)
chr1 (141-178)||(44562618-44562655)
chr1 (142-178)||(34566895-34566931)
chr1 (141-178)||(6212783-6212820)
chr1 (141-174)||(22344785-22344818)
chr1 (141-178)||(23257296-23257333)
chr1 (141-174)||(45659222-45659255)
chr1 (141-178)||(48654910-48654947)
chr1 (142-178)||(14717139-14717175)
chr1 (139-175)||(33177470-33177506)
[»] scaffold0045 (1 HSPs)
scaffold0045 (141-178)||(9527-9564)


Alignment Details
Target: chr3 (Bit Score: 117; Significance: 9e-60; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 87 - 227
Target Start/End: Original strand, 28876646 - 28876786
Alignment:
Q  87 gacatgtttaccctcaaaataggcggtaaaattataatcattaaaatacccaaacttcgatccagtgcagatccaaacaatgactttggcgtttgatatg 186  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| ||||||||||  |||||||||||    
T  28876646 gacatgtttaccctcaaaataggcggtaaaattataatcattaaaatactcaaactttgatccagtgcagatccaatcaatgactttaacgtttgatatg 28876745  T
Q  187 agtatttcggatacttaaatatagtcatatgtgtatgcttt 227  Q
    ||||||||||||||||||||||||||||||| |||||||||    
T  28876746 agtatttcggatacttaaatatagtcatatgcgtatgcttt 28876786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 45 - 91
Target Start/End: Original strand, 28876585 - 28876631
Alignment:
Q  45 agtaaaatgaattatatttatccaacaatatatcataaaagtgacat 91  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  28876585 agtaaaatgaattatatttatccaacaatatatcataaaagtgacat 28876631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 141 - 178
Target Start/End: Complemental strand, 1165302 - 1165265
Alignment:
Q  141 cttcgatccagtgcagatccaaacaatgactttggcgt 178  Q
    |||||||||||||||||||||| |||||||||||||||    
T  1165302 cttcgatccagtgcagatccaatcaatgactttggcgt 1165265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 141 - 178
Target Start/End: Complemental strand, 3088570 - 3088533
Alignment:
Q  141 cttcgatccagtgcagatccaaacaatgactttggcgt 178  Q
    |||||||||||||||||||||| |||||||||||||||    
T  3088570 cttcgatccagtgcagatccaatcaatgactttggcgt 3088533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 141 - 178
Target Start/End: Complemental strand, 28995215 - 28995178
Alignment:
Q  141 cttcgatccagtgcagatccaaacaatgactttggcgt 178  Q
    |||||||||||||||||||||| |||||||||||||||    
T  28995215 cttcgatccagtgcagatccaatcaatgactttggcgt 28995178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 141 - 178
Target Start/End: Original strand, 45664429 - 45664466
Alignment:
Q  141 cttcgatccagtgcagatccaaacaatgactttggcgt 178  Q
    |||||||||||||||||||||| |||||||||||||||    
T  45664429 cttcgatccagtgcagatccaatcaatgactttggcgt 45664466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 188 - 227
Target Start/End: Complemental strand, 913156 - 913117
Alignment:
Q  188 gtatttcggatacttaaatatagtcatatgtgtatgcttt 227  Q
    |||||||||| ||||||||||||||||||||||| |||||    
T  913156 gtatttcggagacttaaatatagtcatatgtgtaggcttt 913117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 175
Target Start/End: Original strand, 43029891 - 43029925
Alignment:
Q  141 cttcgatccagtgcagatccaaacaatgactttgg 175  Q
    |||||||||||||||||||||| ||||||||||||    
T  43029891 cttcgatccagtgcagatccaatcaatgactttgg 43029925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 145 - 178
Target Start/End: Original strand, 4019810 - 4019843
Alignment:
Q  145 gatccagtgcagatccaaacaatgactttggcgt 178  Q
    |||||||||||||||||| |||||||||||||||    
T  4019810 gatccagtgcagatccaatcaatgactttggcgt 4019843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 141 - 174
Target Start/End: Complemental strand, 22286657 - 22286624
Alignment:
Q  141 cttcgatccagtgcagatccaaacaatgactttg 174  Q
    |||||||||||||||||||||| |||||||||||    
T  22286657 cttcgatccagtgcagatccaatcaatgactttg 22286624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 141 - 178
Target Start/End: Complemental strand, 47914499 - 47914462
Alignment:
Q  141 cttcgatccagtgcagatccaaacaatgactttggcgt 178  Q
    ||||||| |||||||||||||| |||||||||||||||    
T  47914499 cttcgattcagtgcagatccaatcaatgactttggcgt 47914462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 178
Target Start/End: Original strand, 37051803 - 37051839
Alignment:
Q  142 ttcgatccagtgcagatccaaacaatgactttggcgt 178  Q
    ||||||||||||||||||||| |||| ||||||||||    
T  37051803 ttcgatccagtgcagatccaaccaataactttggcgt 37051839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0722 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0722
Description:

Target: scaffold0722; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 141 - 178
Target Start/End: Complemental strand, 5432 - 5395
Alignment:
Q  141 cttcgatccagtgcagatccaaacaatgactttggcgt 178  Q
    |||||||||||||||||||||| |||||||||||||||    
T  5432 cttcgatccagtgcagatccaatcaatgactttggcgt 5395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0665 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0665
Description:

Target: scaffold0665; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 141 - 178
Target Start/End: Complemental strand, 1033 - 996
Alignment:
Q  141 cttcgatccagtgcagatccaaacaatgactttggcgt 178  Q
    |||||||||||||||||||||| |||||||||||||||    
T  1033 cttcgatccagtgcagatccaatcaatgactttggcgt 996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 141 - 178
Target Start/End: Original strand, 36732 - 36769
Alignment:
Q  141 cttcgatccagtgcagatccaaacaatgactttggcgt 178  Q
    |||||||||||||||||||||| |||||||||||||||    
T  36732 cttcgatccagtgcagatccaatcaatgactttggcgt 36769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 141 - 178
Target Start/End: Original strand, 244844 - 244881
Alignment:
Q  141 cttcgatccagtgcagatccaaacaatgactttggcgt 178  Q
    |||||||||||||||||||||| |||||||||||||||    
T  244844 cttcgatccagtgcagatccaatcaatgactttggcgt 244881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 141 - 178
Target Start/End: Complemental strand, 8054713 - 8054676
Alignment:
Q  141 cttcgatccagtgcagatccaaacaatgactttggcgt 178  Q
    |||||||||||||||||||||| |||||||||||||||    
T  8054713 cttcgatccagtgcagatccaatcaatgactttggcgt 8054676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 141 - 178
Target Start/End: Complemental strand, 14115734 - 14115697
Alignment:
Q  141 cttcgatccagtgcagatccaaacaatgactttggcgt 178  Q
    |||||||||||||||||||||| |||||||||||||||    
T  14115734 cttcgatccagtgcagatccaatcaatgactttggcgt 14115697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 141 - 178
Target Start/End: Complemental strand, 16996795 - 16996758
Alignment:
Q  141 cttcgatccagtgcagatccaaacaatgactttggcgt 178  Q
    |||||||||||||||||||||| |||||||||||||||    
T  16996795 cttcgatccagtgcagatccaatcaatgactttggcgt 16996758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 141 - 178
Target Start/End: Complemental strand, 18190752 - 18190715
Alignment:
Q  141 cttcgatccagtgcagatccaaacaatgactttggcgt 178  Q
    |||||||||||||||||||||| |||||||||||||||    
T  18190752 cttcgatccagtgcagatccaaccaatgactttggcgt 18190715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 145 - 178
Target Start/End: Complemental strand, 5917651 - 5917618
Alignment:
Q  145 gatccagtgcagatccaaacaatgactttggcgt 178  Q
    |||||||||||||||||| |||||||||||||||    
T  5917651 gatccagtgcagatccaatcaatgactttggcgt 5917618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 221
Target Start/End: Original strand, 10148221 - 10148258
Alignment:
Q  184 atgagtatttcggatacttaaatatagtcatatgtgta 221  Q
    |||||||||||||| |||||||||||||||||| ||||    
T  10148221 atgagtatttcggagacttaaatatagtcatatttgta 10148258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 145 - 178
Target Start/End: Complemental strand, 11298662 - 11298629
Alignment:
Q  145 gatccagtgcagatccaaacaatgactttggcgt 178  Q
    |||||||||||||||||| |||||||||||||||    
T  11298662 gatccagtgcagatccaaccaatgactttggcgt 11298629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 141 - 178
Target Start/End: Complemental strand, 27534318 - 27534281
Alignment:
Q  141 cttcgatccagtgcagatccaaacaatgactttggcgt 178  Q
    |||||||||||||||||||||| ||||||||| |||||    
T  27534318 cttcgatccagtgcagatccaaccaatgacttaggcgt 27534281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 141 - 178
Target Start/End: Original strand, 32062002 - 32062039
Alignment:
Q  141 cttcgatccagtgcagatccaaacaatgactttggcgt 178  Q
    |||||||| ||||||||||||| |||||||||||||||    
T  32062002 cttcgatcaagtgcagatccaaccaatgactttggcgt 32062039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 141 - 178
Target Start/End: Original strand, 32412998 - 32413035
Alignment:
Q  141 cttcgatccagtgcagatccaaacaatgactttggcgt 178  Q
    ||||||||| |||||||||||| |||||||||||||||    
T  32412998 cttcgatcctgtgcagatccaatcaatgactttggcgt 32413035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 141 - 178
Target Start/End: Complemental strand, 37129581 - 37129544
Alignment:
Q  141 cttcgatccagtgcagatccaaacaatgactttggcgt 178  Q
    |||||||| ||||||||||||| |||||||||||||||    
T  37129581 cttcgatcaagtgcagatccaatcaatgactttggcgt 37129544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 141 - 178
Target Start/End: Original strand, 41996751 - 41996788
Alignment:
Q  141 cttcgatccagtgcagatccaaacaatgactttggcgt 178  Q
    ||||||| |||||||||||||| |||||||||||||||    
T  41996751 cttcgattcagtgcagatccaatcaatgactttggcgt 41996788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 141 - 174
Target Start/End: Original strand, 44295524 - 44295557
Alignment:
Q  141 cttcgatccagtgcagatccaaacaatgactttg 174  Q
    |||||||||||||||||||||| |||||||||||    
T  44295524 cttcgatccagtgcagatccaatcaatgactttg 44295557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 224
Target Start/End: Original strand, 4429331 - 4429371
Alignment:
Q  184 atgagtatttcggatacttaaatatagtcatatgtgtatgc 224  Q
    ||||||||||| ||||||| ||||||||||||| |||||||    
T  4429331 atgagtatttcagatacttgaatatagtcatatttgtatgc 4429371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 141 - 178
Target Start/End: Complemental strand, 135051 - 135014
Alignment:
Q  141 cttcgatccagtgcagatccaaacaatgactttggcgt 178  Q
    |||||||||||||||||||||| |||||||||||||||    
T  135051 cttcgatccagtgcagatccaatcaatgactttggcgt 135014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 141 - 178
Target Start/End: Original strand, 2532149 - 2532186
Alignment:
Q  141 cttcgatccagtgcagatccaaacaatgactttggcgt 178  Q
    |||||||||||||||||||||| |||||||||||||||    
T  2532149 cttcgatccagtgcagatccaaccaatgactttggcgt 2532186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 141 - 178
Target Start/End: Complemental strand, 23732299 - 23732262
Alignment:
Q  141 cttcgatccagtgcagatccaaacaatgactttggcgt 178  Q
    |||||||||||||||||||||| |||||||||||||||    
T  23732299 cttcgatccagtgcagatccaatcaatgactttggcgt 23732262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 141 - 178
Target Start/End: Complemental strand, 26017564 - 26017527
Alignment:
Q  141 cttcgatccagtgcagatccaaacaatgactttggcgt 178  Q
    |||||||||||||||||||||| |||||||||||||||    
T  26017564 cttcgatccagtgcagatccaatcaatgactttggcgt 26017527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 179
Target Start/End: Complemental strand, 21329206 - 21329166
Alignment:
Q  139 aacttcgatccagtgcagatccaaacaatgactttggcgtt 179  Q
    |||||||||| ||||||||||||| ||||||||||||||||    
T  21329206 aacttcgatctagtgcagatccaaccaatgactttggcgtt 21329166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 141 - 174
Target Start/End: Original strand, 7986100 - 7986133
Alignment:
Q  141 cttcgatccagtgcagatccaaacaatgactttg 174  Q
    |||||||||||||||||||||| |||||||||||    
T  7986100 cttcgatccagtgcagatccaatcaatgactttg 7986133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 141 - 178
Target Start/End: Complemental strand, 8611530 - 8611493
Alignment:
Q  141 cttcgatccagtgcagatccaaacaatgactttggcgt 178  Q
    |||||||||||||||||||||| |||| ||||||||||    
T  8611530 cttcgatccagtgcagatccaatcaataactttggcgt 8611493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 141 - 178
Target Start/End: Complemental strand, 19895590 - 19895553
Alignment:
Q  141 cttcgatccagtgcagatccaaacaatgactttggcgt 178  Q
    |||||||||||||||||| ||| |||||||||||||||    
T  19895590 cttcgatccagtgcagattcaatcaatgactttggcgt 19895553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 141 - 178
Target Start/End: Complemental strand, 21552361 - 21552324
Alignment:
Q  141 cttcgatccagtgcagatccaaacaatgactttggcgt 178  Q
    |||||||||| ||||||||||| |||||||||||||||    
T  21552361 cttcgatccactgcagatccaaccaatgactttggcgt 21552324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 141 - 178
Target Start/End: Original strand, 24470601 - 24470638
Alignment:
Q  141 cttcgatccagtgcagatccaaacaatgactttggcgt 178  Q
    |||||||||||||||||| ||| |||||||||||||||    
T  24470601 cttcgatccagtgcagattcaatcaatgactttggcgt 24470638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 141 - 178
Target Start/End: Original strand, 24475549 - 24475586
Alignment:
Q  141 cttcgatccagtgcagatccaaacaatgactttggcgt 178  Q
    |||||||||||||||||| ||| |||||||||||||||    
T  24475549 cttcgatccagtgcagattcaatcaatgactttggcgt 24475586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 141 - 174
Target Start/End: Original strand, 37399806 - 37399839
Alignment:
Q  141 cttcgatccagtgcagatccaaacaatgactttg 174  Q
    |||||||||||||||||||||| |||||||||||    
T  37399806 cttcgatccagtgcagatccaatcaatgactttg 37399839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 141 - 178
Target Start/End: Original strand, 40775475 - 40775512
Alignment:
Q  141 cttcgatccagtgcagatccaaacaatgactttggcgt 178  Q
    |||||||| ||||||||||||| |||||||||||||||    
T  40775475 cttcgatctagtgcagatccaatcaatgactttggcgt 40775512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 141 - 178
Target Start/End: Complemental strand, 45949585 - 45949548
Alignment:
Q  141 cttcgatccagtgcagatccaaacaatgactttggcgt 178  Q
    |||||||| ||||||||||||| |||||||||||||||    
T  45949585 cttcgatcaagtgcagatccaatcaatgactttggcgt 45949548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 216
Target Start/End: Original strand, 41288232 - 41288264
Alignment:
Q  184 atgagtatttcggatacttaaatatagtcatat 216  Q
    |||||||||||||| ||||||||||||||||||    
T  41288232 atgagtatttcggagacttaaatatagtcatat 41288264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 177
Target Start/End: Complemental strand, 43807056 - 43807020
Alignment:
Q  141 cttcgatccagtgcagatccaaacaatgactttggcg 177  Q
    |||||||| ||||||||||||| ||||||||||||||    
T  43807056 cttcgatctagtgcagatccaatcaatgactttggcg 43807020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 141 - 178
Target Start/End: Complemental strand, 12576387 - 12576350
Alignment:
Q  141 cttcgatccagtgcagatccaaacaatgactttggcgt 178  Q
    |||||||||||||||||||||| |||||||||||||||    
T  12576387 cttcgatccagtgcagatccaatcaatgactttggcgt 12576350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 178
Target Start/End: Original strand, 19759997 - 19760033
Alignment:
Q  142 ttcgatccagtgcagatccaaacaatgactttggcgt 178  Q
    ||||||||||||||||||||| |||||||||||||||    
T  19759997 ttcgatccagtgcagatccaatcaatgactttggcgt 19760033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 188 - 227
Target Start/End: Complemental strand, 5417064 - 5417025
Alignment:
Q  188 gtatttcggatacttaaatatagtcatatgtgtatgcttt 227  Q
    |||||||||| |||| ||||||||||||||||||||||||    
T  5417064 gtatttcggagacttgaatatagtcatatgtgtatgcttt 5417025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 178
Target Start/End: Original strand, 20845214 - 20845253
Alignment:
Q  139 aacttcgatccagtgcagatccaaacaatgactttggcgt 178  Q
    |||||||||||||||||||||||| ||||||||| |||||    
T  20845214 aacttcgatccagtgcagatccaatcaatgacttcggcgt 20845253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 179
Target Start/End: Original strand, 892492 - 892530
Alignment:
Q  141 cttcgatccagtgcagatccaaacaatgactttggcgtt 179  Q
    |||||| ||||||||||||||| ||||||||||||||||    
T  892492 cttcgacccagtgcagatccaatcaatgactttggcgtt 892530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 141 - 178
Target Start/End: Original strand, 11426149 - 11426186
Alignment:
Q  141 cttcgatccagtgcagatccaaacaatgactttggcgt 178  Q
    |||||||||||||||||| ||| |||||||||||||||    
T  11426149 cttcgatccagtgcagattcaatcaatgactttggcgt 11426186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 141 - 178
Target Start/End: Complemental strand, 23843330 - 23843293
Alignment:
Q  141 cttcgatccagtgcagatccaaacaatgactttggcgt 178  Q
    |||||||||||||||||| ||| |||||||||||||||    
T  23843330 cttcgatccagtgcagattcaatcaatgactttggcgt 23843293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 179
Target Start/End: Complemental strand, 15128037 - 15127997
Alignment:
Q  139 aacttcgatccagtgcagatccaaacaatgactttggcgtt 179  Q
    |||||||||||| |||||||| || ||||||||||||||||    
T  15128037 aacttcgatccactgcagatcaaatcaatgactttggcgtt 15127997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 175
Target Start/End: Original strand, 32804501 - 32804537
Alignment:
Q  139 aacttcgatccagtgcagatccaaacaatgactttgg 175  Q
    |||||||||| ||||||||||||| ||||||||||||    
T  32804501 aacttcgatcaagtgcagatccaatcaatgactttgg 32804537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 141 - 178
Target Start/End: Complemental strand, 6887084 - 6887047
Alignment:
Q  141 cttcgatccagtgcagatccaaacaatgactttggcgt 178  Q
    |||||||||||||||||||||| |||||||||||||||    
T  6887084 cttcgatccagtgcagatccaatcaatgactttggcgt 6887047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 141 - 178
Target Start/End: Original strand, 28618810 - 28618847
Alignment:
Q  141 cttcgatccagtgcagatccaaacaatgactttggcgt 178  Q
    |||||||||||||||||||||| |||||||||||||||    
T  28618810 cttcgatccagtgcagatccaatcaatgactttggcgt 28618847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 141 - 178
Target Start/End: Complemental strand, 29310260 - 29310223
Alignment:
Q  141 cttcgatccagtgcagatccaaacaatgactttggcgt 178  Q
    |||||||||||||||||||||| |||||||||||||||    
T  29310260 cttcgatccagtgcagatccaatcaatgactttggcgt 29310223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 141 - 178
Target Start/End: Original strand, 35906477 - 35906514
Alignment:
Q  141 cttcgatccagtgcagatccaaacaatgactttggcgt 178  Q
    |||||||||||||||||||||| |||||||||||||||    
T  35906477 cttcgatccagtgcagatccaatcaatgactttggcgt 35906514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 175
Target Start/End: Original strand, 31646035 - 31646071
Alignment:
Q  139 aacttcgatccagtgcagatccaaacaatgactttgg 175  Q
    |||||||||||||||||||||||| ||||||||||||    
T  31646035 aacttcgatccagtgcagatccaatcaatgactttgg 31646071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 178
Target Start/End: Complemental strand, 6074644 - 6074605
Alignment:
Q  139 aacttcgatccagtgcagatccaaacaatgactttggcgt 178  Q
    ||||||||||||||| |||||||| |||||||||||||||    
T  6074644 aacttcgatccagtgtagatccaatcaatgactttggcgt 6074605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 141 - 178
Target Start/End: Original strand, 4070759 - 4070796
Alignment:
Q  141 cttcgatccagtgcagatccaaacaatgactttggcgt 178  Q
    |||||||| ||||||||||||| |||||||||||||||    
T  4070759 cttcgatctagtgcagatccaatcaatgactttggcgt 4070796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 141 - 178
Target Start/End: Complemental strand, 20146125 - 20146088
Alignment:
Q  141 cttcgatccagtgcagatccaaacaatgactttggcgt 178  Q
    |||||||| ||||||||||||| |||||||||||||||    
T  20146125 cttcgatctagtgcagatccaatcaatgactttggcgt 20146088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 221
Target Start/End: Original strand, 20270989 - 20271021
Alignment:
Q  189 tatttcggatacttaaatatagtcatatgtgta 221  Q
    ||||||||| |||||||||||||||||||||||    
T  20270989 tatttcggagacttaaatatagtcatatgtgta 20271021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 178
Target Start/End: Complemental strand, 40565062 - 40565026
Alignment:
Q  142 ttcgatccagtgcagatccaaacaatgactttggcgt 178  Q
    |||||||||||||| |||||| |||||||||||||||    
T  40565062 ttcgatccagtgcaaatccaaccaatgactttggcgt 40565026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 141 - 178
Target Start/End: Complemental strand, 23067754 - 23067717
Alignment:
Q  141 cttcgatccagtgcagatccaaacaatgactttggcgt 178  Q
    |||||||||||||||||||||| |||||||||||||||    
T  23067754 cttcgatccagtgcagatccaatcaatgactttggcgt 23067717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 141 - 178
Target Start/End: Complemental strand, 46716800 - 46716763
Alignment:
Q  141 cttcgatccagtgcagatccaaacaatgactttggcgt 178  Q
    |||||||||||||||||||||| |||||||||||||||    
T  46716800 cttcgatccagtgcagatccaatcaatgactttggcgt 46716763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 141 - 178
Target Start/End: Complemental strand, 52555646 - 52555609
Alignment:
Q  141 cttcgatccagtgcagatccaaacaatgactttggcgt 178  Q
    |||||||||||||||||||||| |||||||||||||||    
T  52555646 cttcgatccagtgcagatccaatcaatgactttggcgt 52555609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 141 - 178
Target Start/End: Original strand, 53903789 - 53903826
Alignment:
Q  141 cttcgatccagtgcagatccaaacaatgactttggcgt 178  Q
    |||||||||||||||||||||| |||||||||||||||    
T  53903789 cttcgatccagtgcagatccaatcaatgactttggcgt 53903826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 188 - 227
Target Start/End: Complemental strand, 15729821 - 15729782
Alignment:
Q  188 gtatttcggatacttaaatatagtcatatgtgtatgcttt 227  Q
    |||||||||| ||||||||||||||||||||||| |||||    
T  15729821 gtatttcggagacttaaatatagtcatatgtgtaggcttt 15729782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 184 - 227
Target Start/End: Complemental strand, 29589205 - 29589162
Alignment:
Q  184 atgagtatttcggatacttaaatatagtcatatgtgtatgcttt 227  Q
    |||||||||  ||| |||||||||||||||||||||||||||||    
T  29589205 atgagtattctggagacttaaatatagtcatatgtgtatgcttt 29589162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 174
Target Start/End: Complemental strand, 31601264 - 31601229
Alignment:
Q  139 aacttcgatccagtgcagatccaaacaatgactttg 174  Q
    |||||||||||||||||||||||| |||||||||||    
T  31601264 aacttcgatccagtgcagatccaatcaatgactttg 31601229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 174
Target Start/End: Original strand, 42972244 - 42972279
Alignment:
Q  139 aacttcgatccagtgcagatccaaacaatgactttg 174  Q
    |||||||||||||||||||||||| |||||||||||    
T  42972244 aacttcgatccagtgcagatccaatcaatgactttg 42972279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 175
Target Start/End: Original strand, 4634491 - 4634525
Alignment:
Q  141 cttcgatccagtgcagatccaaacaatgactttgg 175  Q
    |||||||||||||||||||||| ||||||||||||    
T  4634491 cttcgatccagtgcagatccaatcaatgactttgg 4634525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 141 - 178
Target Start/End: Original strand, 9662061 - 9662098
Alignment:
Q  141 cttcgatccagtgcagatccaaacaatgactttggcgt 178  Q
    |||||||||||||||||| ||| |||||||||||||||    
T  9662061 cttcgatccagtgcagatgcaatcaatgactttggcgt 9662098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 141 - 174
Target Start/End: Complemental strand, 14542418 - 14542385
Alignment:
Q  141 cttcgatccagtgcagatccaaacaatgactttg 174  Q
    |||||||||||||||||||||| |||||||||||    
T  14542418 cttcgatccagtgcagatccaatcaatgactttg 14542385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 141 - 178
Target Start/End: Complemental strand, 30470029 - 30469992
Alignment:
Q  141 cttcgatccagtgcagatccaaacaatgactttggcgt 178  Q
    |||||||| ||||||||||||| |||||||||||||||    
T  30470029 cttcgatctagtgcagatccaatcaatgactttggcgt 30469992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 141 - 178
Target Start/End: Complemental strand, 37869323 - 37869286
Alignment:
Q  141 cttcgatccagtgcagatccaaacaatgactttggcgt 178  Q
    ||||||||||||||| |||||| |||||||||||||||    
T  37869323 cttcgatccagtgcaaatccaatcaatgactttggcgt 37869286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 178
Target Start/End: Complemental strand, 33020832 - 33020796
Alignment:
Q  142 ttcgatccagtgcagatccaaacaatgactttggcgt 178  Q
    |||||||||||||| |||||| |||||||||||||||    
T  33020832 ttcgatccagtgcaaatccaaccaatgactttggcgt 33020796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 179
Target Start/End: Complemental strand, 46386682 - 46386642
Alignment:
Q  139 aacttcgatccagtgcagatccaaacaatgactttggcgtt 179  Q
    |||||||||| ||||| ||||||| ||||||||||||||||    
T  46386682 aacttcgatctagtgctgatccaatcaatgactttggcgtt 46386642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 141 - 178
Target Start/End: Original strand, 3390631 - 3390668
Alignment:
Q  141 cttcgatccagtgcagatccaaacaatgactttggcgt 178  Q
    |||||||||||||||||||||| |||||||||||||||    
T  3390631 cttcgatccagtgcagatccaatcaatgactttggcgt 3390668  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 141 - 178
Target Start/End: Complemental strand, 7640262 - 7640225
Alignment:
Q  141 cttcgatccagtgcagatccaaacaatgactttggcgt 178  Q
    |||||||||||||||||||||| |||||||||||||||    
T  7640262 cttcgatccagtgcagatccaatcaatgactttggcgt 7640225  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 141 - 178
Target Start/End: Original strand, 35353848 - 35353885
Alignment:
Q  141 cttcgatccagtgcagatccaaacaatgactttggcgt 178  Q
    |||||||||||||||||||||| |||||||||||||||    
T  35353848 cttcgatccagtgcagatccaaccaatgactttggcgt 35353885  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 141 - 178
Target Start/End: Original strand, 36508137 - 36508174
Alignment:
Q  141 cttcgatccagtgcagatccaaacaatgactttggcgt 178  Q
    |||||||||||||||||||||| |||||||||||||||    
T  36508137 cttcgatccagtgcagatccaatcaatgactttggcgt 36508174  T

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Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 141 - 178
Target Start/End: Original strand, 41177066 - 41177103
Alignment:
Q  141 cttcgatccagtgcagatccaaacaatgactttggcgt 178  Q
    |||||||||||||||||||||| |||||||||||||||    
T  41177066 cttcgatccagtgcagatccaatcaatgactttggcgt 41177103  T

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Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 141 - 177
Target Start/End: Original strand, 20036590 - 20036626
Alignment:
Q  141 cttcgatccagtgcagatccaaacaatgactttggcg 177  Q
    |||||||||||||||||||||| ||||||||||||||    
T  20036590 cttcgatccagtgcagatccaatcaatgactttggcg 20036626  T

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Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 174
Target Start/End: Original strand, 3603191 - 3603226
Alignment:
Q  139 aacttcgatccagtgcagatccaaacaatgactttg 174  Q
    |||||||||||||||||||||||| |||||||||||    
T  3603191 aacttcgatccagtgcagatccaatcaatgactttg 3603226  T

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Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 175
Target Start/End: Complemental strand, 27024045 - 27024011
Alignment:
Q  141 cttcgatccagtgcagatccaaacaatgactttgg 175  Q
    |||||||||||||||||||||| ||||||||||||    
T  27024045 cttcgatccagtgcagatccaatcaatgactttgg 27024011  T

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Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 175
Target Start/End: Original strand, 43567081 - 43567115
Alignment:
Q  141 cttcgatccagtgcagatccaaacaatgactttgg 175  Q
    |||||||||||||||||||||| ||||||||||||    
T  43567081 cttcgatccagtgcagatccaatcaatgactttgg 43567115  T

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Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 141 - 178
Target Start/End: Complemental strand, 2251253 - 2251216
Alignment:
Q  141 cttcgatccagtgcagatccaaacaatgactttggcgt 178  Q
    ||||||||||||||| |||||| |||||||||||||||    
T  2251253 cttcgatccagtgcaaatccaaccaatgactttggcgt 2251216  T

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Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 141 - 178
Target Start/End: Complemental strand, 3397885 - 3397848
Alignment:
Q  141 cttcgatccagtgcagatccaaacaatgactttggcgt 178  Q
    |||||||||||||||||| ||| |||||||||||||||    
T  3397885 cttcgatccagtgcagattcaaccaatgactttggcgt 3397848  T

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Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 141 - 178
Target Start/End: Original strand, 3465137 - 3465174
Alignment:
Q  141 cttcgatccagtgcagatccaaacaatgactttggcgt 178  Q
    |||||||||||||||||||||| |||||| ||||||||    
T  3465137 cttcgatccagtgcagatccaatcaatgattttggcgt 3465174  T

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Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 141 - 178
Target Start/End: Original strand, 25516700 - 25516737
Alignment:
Q  141 cttcgatccagtgcagatccaaacaatgactttggcgt 178  Q
    |||| ||||||||||||||||| |||||||||||||||    
T  25516700 cttcaatccagtgcagatccaatcaatgactttggcgt 25516737  T

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Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 141 - 178
Target Start/End: Complemental strand, 27191243 - 27191206
Alignment:
Q  141 cttcgatccagtgcagatccaaacaatgactttggcgt 178  Q
    ||||||||||||| |||||||| |||||||||||||||    
T  27191243 cttcgatccagtgtagatccaatcaatgactttggcgt 27191206  T

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Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 141 - 178
Target Start/End: Complemental strand, 27841057 - 27841020
Alignment:
Q  141 cttcgatccagtgcagatccaaacaatgactttggcgt 178  Q
    ||||||||||||| |||||||| |||||||||||||||    
T  27841057 cttcgatccagtgtagatccaatcaatgactttggcgt 27841020  T

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Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 141 - 174
Target Start/End: Original strand, 38822280 - 38822313
Alignment:
Q  141 cttcgatccagtgcagatccaaacaatgactttg 174  Q
    |||||||||||||||||||||| |||||||||||    
T  38822280 cttcgatccagtgcagatccaatcaatgactttg 38822313  T

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Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 224
Target Start/End: Complemental strand, 6431253 - 6431213
Alignment:
Q  184 atgagtatttcggatacttaaatatagtcatatgtgtatgc 224  Q
    ||||||||| |||| |||||||||||||||||| |||||||    
T  6431253 atgagtattccggagacttaaatatagtcatatttgtatgc 6431213  T

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Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 175
Target Start/End: Original strand, 29734396 - 29734432
Alignment:
Q  139 aacttcgatccagtgcagatccaaacaatgactttgg 175  Q
    ||||||||||||||||||||| || ||||||||||||    
T  29734396 aacttcgatccagtgcagatcaaatcaatgactttgg 29734432  T

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Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 173
Target Start/End: Original strand, 44951627 - 44951659
Alignment:
Q  141 cttcgatccagtgcagatccaaacaatgacttt 173  Q
    |||||||||||||||||||||| ||||||||||    
T  44951627 cttcgatccagtgcagatccaatcaatgacttt 44951659  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 141 - 178
Target Start/End: Complemental strand, 15276352 - 15276315
Alignment:
Q  141 cttcgatccagtgcagatccaaacaatgactttggcgt 178  Q
    |||||||||||||||||||||| |||||||||||||||    
T  15276352 cttcgatccagtgcagatccaatcaatgactttggcgt 15276315  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 141 - 178
Target Start/End: Original strand, 21326681 - 21326718
Alignment:
Q  141 cttcgatccagtgcagatccaaacaatgactttggcgt 178  Q
    |||||||||||||||||||||| |||||||||||||||    
T  21326681 cttcgatccagtgcagatccaatcaatgactttggcgt 21326718  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 141 - 178
Target Start/End: Complemental strand, 44562655 - 44562618
Alignment:
Q  141 cttcgatccagtgcagatccaaacaatgactttggcgt 178  Q
    |||||||||||||||||||||| |||||||||||||||    
T  44562655 cttcgatccagtgcagatccaatcaatgactttggcgt 44562618  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 178
Target Start/End: Original strand, 34566895 - 34566931
Alignment:
Q  142 ttcgatccagtgcagatccaaacaatgactttggcgt 178  Q
    ||||||||||||||||||||| |||||||||||||||    
T  34566895 ttcgatccagtgcagatccaaccaatgactttggcgt 34566931  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 141 - 178
Target Start/End: Complemental strand, 6212820 - 6212783
Alignment:
Q  141 cttcgatccagtgcagatccaaacaatgactttggcgt 178  Q
    |||||||| ||||||||||||| |||||||||||||||    
T  6212820 cttcgatcaagtgcagatccaatcaatgactttggcgt 6212783  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 141 - 174
Target Start/End: Complemental strand, 22344818 - 22344785
Alignment:
Q  141 cttcgatccagtgcagatccaaacaatgactttg 174  Q
    |||||||||||||||||||||| |||||||||||    
T  22344818 cttcgatccagtgcagatccaatcaatgactttg 22344785  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 141 - 178
Target Start/End: Original strand, 23257296 - 23257333
Alignment:
Q  141 cttcgatccagtgcagatccaaacaatgactttggcgt 178  Q
    |||||||||| ||||||||||| |||||||||||||||    
T  23257296 cttcgatccactgcagatccaatcaatgactttggcgt 23257333  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 141 - 174
Target Start/End: Original strand, 45659222 - 45659255
Alignment:
Q  141 cttcgatccagtgcagatccaaacaatgactttg 174  Q
    |||||||||||||||||||||| |||||||||||    
T  45659222 cttcgatccagtgcagatccaatcaatgactttg 45659255  T

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Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 141 - 178
Target Start/End: Complemental strand, 48654947 - 48654910
Alignment:
Q  141 cttcgatccagtgcagatccaaacaatgactttggcgt 178  Q
    ||||||| |||||||||||||| |||||||||||||||    
T  48654947 cttcgattcagtgcagatccaatcaatgactttggcgt 48654910  T

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Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 178
Target Start/End: Complemental strand, 14717175 - 14717139
Alignment:
Q  142 ttcgatccagtgcagatccaaacaatgactttggcgt 178  Q
    ||||||||||||||||||||| ||||||| |||||||    
T  14717175 ttcgatccagtgcagatccaatcaatgacattggcgt 14717139  T

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Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 175
Target Start/End: Complemental strand, 33177506 - 33177470
Alignment:
Q  139 aacttcgatccagtgcagatccaaacaatgactttgg 175  Q
    ||||| |||||||||||||||||| ||||||||||||    
T  33177506 aacttagatccagtgcagatccaatcaatgactttgg 33177470  T

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Target: scaffold0045 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 141 - 178
Target Start/End: Complemental strand, 9564 - 9527
Alignment:
Q  141 cttcgatccagtgcagatccaaacaatgactttggcgt 178  Q
    |||||||||||||||||| ||| |||||||||||||||    
T  9564 cttcgatccagtgcagattcaatcaatgactttggcgt 9527  T

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