View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17064_low_22 (Length: 222)
Name: NF17064_low_22
Description: NF17064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17064_low_22 |
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Alignment Details
Target: chr6 (Bit Score: 147; Significance: 1e-77; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 11 - 205
Target Start/End: Original strand, 6296440 - 6296634
Alignment:
| Q |
11 |
gagagaagaaagaggaagaaaagggtagtgtaatatatttcaagcagaacnnnnnnnnatctaacagtagtatttttagatagatgaaattataattgcc |
110 |
Q |
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| T |
6296440 |
gagagaagagagaggaagaaaagggtattgtaatatatttcaagtagaacttttttttatctagcagtagtatttttagatagatgaaattataattgcc |
6296539 |
T |
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| Q |
111 |
aacacaaactcacacgacatgcgaaagagtcgtggtttgaattctgatcacgacgttttgcctaataattcagacatttttaacaattgagatat |
205 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |
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| T |
6296540 |
aacacaaactcacacgacatgcgaaagagtcgtggtttgaattctgatcacgacgttttgcctaacaatttagacatttttaacaattgagatat |
6296634 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 11 - 205
Target Start/End: Original strand, 6303250 - 6303444
Alignment:
| Q |
11 |
gagagaagaaagaggaagaaaagggtagtgtaatatatttcaagcagaacnnnnnnnnatctaacagtagtatttttagatagatgaaattataattgcc |
110 |
Q |
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||||||||| ||||||||||||||||| |||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||| |
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| T |
6303250 |
gagagaagagagaggaagaaaagggtattgtaatatatttcaagtagaacttttttttatctagcagtagtatttttagatagatgaaattataattgcc |
6303349 |
T |
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| Q |
111 |
aacacaaactcacacgacatgcgaaagagtcgtggtttgaattctgatcacgacgttttgcctaataattcagacatttttaacaattgagatat |
205 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |
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| T |
6303350 |
aacacaaactcacacgacatgcgaaagagtcgtggtttgaattctgatcacgacgttttgcctaacaatttagacatttttaacaattgagatat |
6303444 |
T |
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