View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17064_low_4 (Length: 513)
Name: NF17064_low_4
Description: NF17064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17064_low_4 |
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| [»] chr4 (3 HSPs) |
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| [»] chr8 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 431; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 19 - 513
Target Start/End: Original strand, 28730141 - 28730635
Alignment:
| Q |
19 |
ttattaacgaactagttaagcaacatagagtatatatggataatagtgtgaactaactacaaattcagagttacaattcatgagacaaagaagtgcagca |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || |||||||||||||||||||||||| |
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| T |
28730141 |
ttattaacgaactagttaagcaacatagagtatatatggataatagtgtgaattaactacaaattcagagtttcacttcatgagacaaagaagtgcagca |
28730240 |
T |
|
| Q |
119 |
caaactaaaaagaactaagcaacggtgtgaattagctacattagatgaacaacagtgtaaacttattaacgacaaatttcatatagttttacttcagcag |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
28730241 |
caaactaaaaagaactaagcaacggtgtgaattagctacattagatgaacaacggtgtaaacttattaactacaaatttcatatagttttacttcagcag |
28730340 |
T |
|
| Q |
219 |
agaatgaagtaaatcgcaatcttcgtcatcatcgaaccatcacactcacaggccatggtgatcttcaatctcaatcattggcctgacctgaggcatagga |
318 |
Q |
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|||| |||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |
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| T |
28730341 |
agaaagaagtaaatcgcaatcttcgtcatgatcaaaccatcacactcacaggccatggtgatcttcaatctcaaacattggcctgacctgaggcatggga |
28730440 |
T |
|
| Q |
319 |
gacacacctgttgcagcagtgacatcagcagcacaaccaccacgtccatcaagagcagagcaggtttcttccgtggcctgaccagcagaatctgatacag |
418 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| || ||||||||||||||||||||||||| |
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| T |
28730441 |
gacacacctgttgcagcagtgacatcagcagcacagccaccacgcccatcaagagcagagcaggtttcttcagtcgcctgaccagcagaatctgatacag |
28730540 |
T |
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| Q |
419 |
tagcagctctggctccgacacccgctccttccgatgctccttcacctcctaagatagtatcataagcagccgcaataggattgatatgcggaaaa |
513 |
Q |
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| T |
28730541 |
tagcagctctggctccgacacctgctccttccgatgctccttcacctcctaagatagtatcataagcatccgcaataggattgatatgcggaaaa |
28730635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 163 - 199
Target Start/End: Complemental strand, 33078592 - 33078556
Alignment:
| Q |
163 |
atgaacaacagtgtaaacttattaacgacaaatttca |
199 |
Q |
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| T |
33078592 |
atgaacaacagtgtaaacttattaactacaaatttca |
33078556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 216 - 287
Target Start/End: Complemental strand, 33078557 - 33078483
Alignment:
| Q |
216 |
cagagaatgaagtaaatcgcaatcttcgtcatcatc---gaaccatcacactcacaggccatggtgatcttcaat |
287 |
Q |
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||||||| |||||||| ||| |||||| |||||||| ||| |||| || |||||| ||||||||||||||||| |
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| T |
33078557 |
cagagaaagaagtaaaccgcgatcttcatcatcatcattgaagcatcgcagtcacagcccatggtgatcttcaat |
33078483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 375; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 1 - 513
Target Start/End: Original strand, 38120548 - 38121061
Alignment:
| Q |
1 |
ctaaatccacaaattgttttattaacgaactagttaagcaacatagagtatatatggataatagtgtgaactaactacaaattcagagttacaattcatg |
100 |
Q |
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||||||||||||||||||||||| | |||||| ||||||||||||| ||| | ||||||||||||||| |||||||||||||| |||| || |||||| |
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| T |
38120548 |
ctaaatccacaaattgttttattgaagaactatttaagcaacatagtgtagtt--ggataatagtgtgaattaactacaaattcaaagtttcacttcatg |
38120645 |
T |
|
| Q |
101 |
agacaaagaagtgcagcacaaactaaaaagaactaagcaacggtgtgaattagctacattagatgaacaacagtgtaaacttattaacgacaaatttcat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| |
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| T |
38120646 |
agacaaagaagtgcagcacaaactaaaaagaactaaggaaccgtgtgaattagctacattagatggacaacagtgtaaacttattaactacaaatttcat |
38120745 |
T |
|
| Q |
201 |
atagttttacttcagcagagaatgaagtaaatcgcaatcttcgtcat---catcgaaccatcacactcacaggccatggtgatcttcaatctcaatcatt |
297 |
Q |
| |
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| || || |||||||||||||| ||| |||| |||||||||| |||| ||||||| |||| |||||||||||||||||||||||||||||||| |||| |
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| T |
38120746 |
agagattcacttcagcagagaaagaactaaaccgcaatcttcatcatcatcatcgaagcatcgcactcacaggccatggtgatcttcaatctcaaccatt |
38120845 |
T |
|
| Q |
298 |
ggcctgacctgaggcataggagacacacctgttgcagcagtgacatcagcagcacaaccaccacgtccatcaagagcagagcaggtttcttccgtggcct |
397 |
Q |
| |
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||| ||||||||||||| ||||||||||||| ||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
38120846 |
ggcttgacctgaggcatgggagacacacctgctgcagtagtgacatcagcagcacaaccaccacgtccatcaggagcagagcaggtttcttccgtggcct |
38120945 |
T |
|
| Q |
398 |
gaccagcagaatctgatacagtagcagctctggctccgacacccgctccttccgatgctccttcacctcctaagatagtatcataagcagccgcaatagg |
497 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38120946 |
gaccagcagaatctgatacagtagcagctctggctccgacacccgctccttccgatgctccttcacctcctaagatagtatcataagcagccgcaatagg |
38121045 |
T |
|
| Q |
498 |
attgatatgcggaaaa |
513 |
Q |
| |
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|||||||||||||||| |
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| T |
38121046 |
attgatatgcggaaaa |
38121061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 174 - 513
Target Start/End: Complemental strand, 38609401 - 38609062
Alignment:
| Q |
174 |
tgtaaacttattaacgacaaatttcatatagttttacttcagcagagaatgaagtaaatcgcaatcttcgtcatcatcgaaccatcacactcacaggcca |
273 |
Q |
| |
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||||||||||||||| |||||||||||| || || |||||||||||||| ||| |||| |||||||||| ||||||||||| |||| ||||||||||||| |
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| T |
38609401 |
tgtaaacttattaactacaaatttcatagagattcacttcagcagagaaagaactaaaccgcaatcttcatcatcatcgaagcatcgcactcacaggcca |
38609302 |
T |
|
| Q |
274 |
tggtgatcttcaatctcaatcattggcctgacctgaggcataggagacacacctgttgcagcagtgacatcagcagcacaaccaccacgtccatcaagag |
373 |
Q |
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||||||||||||||||||| ||||||| ||||||||||||| ||||||||||||| || || ||||||| |||||||||||||||||||||||||||||| |
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|
| T |
38609301 |
tggtgatcttcaatctcaaccattggcttgacctgaggcatgggagacacacctgctgtagtagtgacaccagcagcacaaccaccacgtccatcaagag |
38609202 |
T |
|
| Q |
374 |
cagagcaggtttcttccgtggcctgaccagcagaatctgatacagtagcagctctggctccgacacccgctccttccgatgctccttcacctcctaagat |
473 |
Q |
| |
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||||||||||||||||||| |||||||| | ||||||| ||| ||| | |||| |||||| ||||| ||||||||||| ||||||||||||||||| || |
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| T |
38609201 |
cagagcaggtttcttccgtcgcctgacctggagaatctaataaagttgatgctccggctccaacacctgctccttccgacgctccttcacctcctaatat |
38609102 |
T |
|
| Q |
474 |
agtatcataagcagccgcaataggattgatatgcggaaaa |
513 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38609101 |
agtatcataagcagccgcaataggattgatatgcggaaaa |
38609062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 174 - 513
Target Start/End: Complemental strand, 38794184 - 38793845
Alignment:
| Q |
174 |
tgtaaacttattaacgacaaatttcatatagttttacttcagcagagaatgaagtaaatcgcaatcttcgtcatcatcgaaccatcacactcacaggcca |
273 |
Q |
| |
|
||||||||||||||| |||||||||||| || || |||||||||||||| ||| |||| |||||||||| ||||||||||| |||| ||||||||||||| |
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|
| T |
38794184 |
tgtaaacttattaactacaaatttcatagagattcacttcagcagagaaagaactaaaccgcaatcttcatcatcatcgaagcatcgcactcacaggcca |
38794085 |
T |
|
| Q |
274 |
tggtgatcttcaatctcaatcattggcctgacctgaggcataggagacacacctgttgcagcagtgacatcagcagcacaaccaccacgtccatcaagag |
373 |
Q |
| |
|
||||||||||||||||||| ||||||| ||||||||||||| ||||||||||||| || || ||||||| |||||||||||||||||||||||||||||| |
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|
| T |
38794084 |
tggtgatcttcaatctcaaccattggcttgacctgaggcatgggagacacacctgctgtagtagtgacaccagcagcacaaccaccacgtccatcaagag |
38793985 |
T |
|
| Q |
374 |
cagagcaggtttcttccgtggcctgaccagcagaatctgatacagtagcagctctggctccgacacccgctccttccgatgctccttcacctcctaagat |
473 |
Q |
| |
|
||||||||||||||||||| |||||||| | ||||||| ||| ||| | |||| |||||| ||||| ||||||||||| ||||||||||||||||| || |
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|
| T |
38793984 |
cagagcaggtttcttccgtcgcctgacctggagaatctaataaagttgatgctccggctccaacacctgctccttccgacgctccttcacctcctaatat |
38793885 |
T |
|
| Q |
474 |
agtatcataagcagccgcaataggattgatatgcggaaaa |
513 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38793884 |
agtatcataagcagccgcaataggattgatatgcggaaaa |
38793845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 219 - 328
Target Start/End: Complemental strand, 34592957 - 34592845
Alignment:
| Q |
219 |
agaatgaagtaaatcgcaatcttcgtcatcatc---gaaccatcacactcacaggccatggtgatcttcaatctcaatcattggcctgacctgaggcata |
315 |
Q |
| |
|
|||| |||||||| |||||||||| |||||||| ||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| |
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|
| T |
34592957 |
agaaagaagtaaaccgcaatcttcatcatcatcattgaagcatcacactcacaggccatggtgatcttcaatctcaaccattggcctgacccgaggcacg |
34592858 |
T |
|
| Q |
316 |
ggagacacacctg |
328 |
Q |
| |
|
||||||||||||| |
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|
| T |
34592857 |
ggagacacacctg |
34592845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 104 - 141
Target Start/End: Original strand, 3928106 - 3928143
Alignment:
| Q |
104 |
caaagaagtgcagcacaaactaaaaagaactaagcaac |
141 |
Q |
| |
|
||||||||||| |||||||||||||||| ||||||||| |
|
|
| T |
3928106 |
caaagaagtgctgcacaaactaaaaagatctaagcaac |
3928143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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