View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17064_low_6 (Length: 425)
Name: NF17064_low_6
Description: NF17064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17064_low_6 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 14 - 425
Target Start/End: Original strand, 47751120 - 47751536
Alignment:
| Q |
14 |
atgggatgatgcgacaattatcagtttagagatgaccctggggagtgggagatgcacacgagcataagtaggagaaaggagggtgggaatgagaagactt |
113 |
Q |
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| T |
47751120 |
atgggatgatgcgacaattatcagtttagagatgaccctggggagtgggagatgcacacgagcataagtagaagaaaggagggtgggaatgagaagactt |
47751219 |
T |
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| Q |
114 |
ggagagtcaatggatgaattaaatgagtggttgaagacttgataacaagcctcagagcctatggctgtcggagttgaaacaagatatatat---tatatg |
210 |
Q |
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| T |
47751220 |
ggagagtcaatggatgaattaaatgagtggttgaagacttgataacaagcctcagagcctatggctgtcggagttgaaacaagatacatattactatatg |
47751319 |
T |
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| Q |
211 |
gaatgtaattttactaaaaacaaagcatatactataacatagaggtataattttaagatcatattataccacaagttacac-----gactatctcaaatc |
305 |
Q |
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| T |
47751320 |
gaatgtaattttactaaaaacaaagcata---tataacatagaggtataattttaacatcatgttataccacaagttatacgatttgactatctcaaatc |
47751416 |
T |
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| Q |
306 |
cataatataaaataatggaggaaaataaatatatctaaaccgtcaagtttaagttgagtcgttaaatgtatgagggcctcaggtattttaggttatacaa |
405 |
Q |
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| T |
47751417 |
cataatataaaataatgaaggaaaagaaatatatctaaaccgtcaagtttaagttgagtcgttaaatgtatgagggcctcaggtattttaggttatacaa |
47751516 |
T |
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| Q |
406 |
aagtactccttccgttcctt |
425 |
Q |
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| T |
47751517 |
aagtactccttccgttcctt |
47751536 |
T |
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