View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17064_low_7 (Length: 415)

Name: NF17064_low_7
Description: NF17064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17064_low_7
NF17064_low_7
[»] chr1 (6 HSPs)
chr1 (21-408)||(33856955-33857347)
chr1 (21-408)||(33923576-33923968)
chr1 (40-310)||(47872396-47872674)
chr1 (40-157)||(49547324-49547446)
chr1 (200-230)||(44261733-44261763)
chr1 (360-396)||(47872307-47872343)
[»] chr3 (1 HSPs)
chr3 (355-396)||(14961558-14961599)
[»] chr5 (1 HSPs)
chr5 (172-224)||(31264611-31264663)


Alignment Details
Target: chr1 (Bit Score: 306; Significance: 1e-172; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 21 - 408
Target Start/End: Complemental strand, 33857347 - 33856955
Alignment:
Q  21 caaggacataaaatgcatgaacccctattttaataatccaaagatatagacttcatcagttcattac---gtggaaaaattctatcatcaattagttttt 117  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    ||| ||||||||||||||||||||||||||    
T  33857347 caaggacataaaatgcatgaacccctattttaatactccaaagatatagacttcatcagttcattaacgtgtgaaaaaattctatcatcaattagttttt 33857248  T
Q  118 cttc---aacaatgcagtgtgtcacaacttaatccatcaattagtaacctaatcaaattagtctctaaattaggactccgtctgtctcaatccaacaaag 214  Q
    ||||   ||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33857247 cttcttcaacaatgcagtgtgtcacaacttaatccatcaattagtttt-taatcaaattagtctctaaattaggactccgtctgtctcaatccaacaaag 33857149  T
Q  215 attaaacaatttaaatgtcatacatacaactggaggactaatattatggtggatggcaacaaaccaaaaatcatggcattgcggcatatggtagaaccat 314  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  33857148 attaaacaatttaaatgtcatacatacaactggaggactaatattatggtggatggcaacaaaccaaaaatcatggcattgcagcatatggtagaaccat 33857049  T
Q  315 ggcatatatatatagcaagcnnnnnnnncggcagaaaatcataaacatatgtgaagtgcaattaataatcataaactactaatcattcatctca 408  Q
    ||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33857048 ggcatatatatatagcaagcaaaaaaaacggcagaaaatcataaacatatgtgaagtgcaattaataatcataaactactaatcattcatctca 33856955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 21 - 408
Target Start/End: Original strand, 33923576 - 33923968
Alignment:
Q  21 caaggacataaaatgcatgaacccctattttaataatccaaagatatagacttcatcagttcattac---gtggaaaaattctatcatcaattagttttt 117  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    ||| ||||||||||||||||||||||||||    
T  33923576 caaggacataaaatgcatgaacccctattttaatactccaaagatatagacttcatcagttcattaacgtgtgaaaaaattctatcatcaattagttttt 33923675  T
Q  118 cttc---aacaatgcagtgtgtcacaacttaatccatcaattagtaacctaatcaaattagtctctaaattaggactccgtctgtctcaatccaacaaag 214  Q
    ||||   ||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33923676 cttcttcaacaatgcagtgtgtcacaacttaatccatcaattagtttt-taatcaaattagtctctaaattaggactccgtctgtctcaatccaacaaag 33923774  T
Q  215 attaaacaatttaaatgtcatacatacaactggaggactaatattatggtggatggcaacaaaccaaaaatcatggcattgcggcatatggtagaaccat 314  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  33923775 attaaacaatttaaatgtcatacatacaactggaggactaatattatggtggatggcaacaaaccaaaaatcatggcattgcagcatatggtagaaccat 33923874  T
Q  315 ggcatatatatatagcaagcnnnnnnnncggcagaaaatcataaacatatgtgaagtgcaattaataatcataaactactaatcattcatctca 408  Q
    ||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33923875 ggcatatatatatagcaagcaaaaaaaacggcagaaaatcataaacatatgtgaagtgcaattaataatcataaactactaatcattcatctca 33923968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 40 - 310
Target Start/End: Complemental strand, 47872674 - 47872396
Alignment:
Q  40 aacccctattttaataatccaaagatatagacttcatcagttcattacgtggaaaaattctatcatcaattagtttttcttcaacaatgcagtgtgtcac 139  Q
    |||||||||||||||| |||||||||||||||| |||||||||||||| ||  ||| |||||||||| ||  ||  |||||||||||||||| |||||||    
T  47872674 aacccctattttaatactccaaagatatagactccatcagttcattacatgacaaatttctatcatcgat--gtagttcttcaacaatgcagagtgtcac 47872577  T
Q  140 aacttaatccatcaattagt----aacctaatcaaattagtctctaaattaggactccgtctgtctcaatccaacaaagattaaacaatttaaat----- 230  Q
    ||||||||||||||| | ||    ||  | |||||||||||||||||||||||||||| |    || ||||||||||||||| ||||| ||||||         
T  47872576 aacttaatccatcaaattgtgcaaaatttcatcaaattagtctctaaattaggactccattacacttaatccaacaaagattgaacaaattaaatatgcc 47872477  T
Q  231 -gtcatacatacaactggaggactaatattatggtggatggcaacaaaccaaaaatcatggcattgcggcatatggtagaa 310  Q
      | ||| ||| |||| ||| |||||| ||||| |||||||| |||||||||||||||||||||| |||||||||||||||    
T  47872476 acttatatatataactagagaactaatgttatgttggatggcgacaaaccaaaaatcatggcattacggcatatggtagaa 47872396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 40 - 157
Target Start/End: Original strand, 49547324 - 49547446
Alignment:
Q  40 aacccctattttaataatccaaagatatagacttcatcagttcattacgtggaaaaattctatcatca---attagttt--ttcttcaacaatgcagtgt 134  Q
    |||||||||||||||| |||||||||||| ||| ||| ||||||||||||| ||||||||||||||||   || |||||  |||| ||||| ||||| ||    
T  49547324 aacccctattttaatactccaaagatataaactacattagttcattacgtgaaaaaattctatcatcactcatcagtttagttctccaacagtgcagagt 49547423  T
Q  135 gtcacaacttaatccatcaatta 157  Q
    | | |||||||||||||||||||    
T  49547424 gacccaacttaatccatcaatta 49547446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 200 - 230
Target Start/End: Original strand, 44261733 - 44261763
Alignment:
Q  200 ctcaatccaacaaagattaaacaatttaaat 230  Q
    |||||||||||||||||||||||||||||||    
T  44261733 ctcaatccaacaaagattaaacaatttaaat 44261763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 360 - 396
Target Start/End: Complemental strand, 47872343 - 47872307
Alignment:
Q  360 catatgtgaagtgcaattaataatcataaactactaa 396  Q
    |||||| |||||||||| |||||||||||||||||||    
T  47872343 catatgagaagtgcaatgaataatcataaactactaa 47872307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 355 - 396
Target Start/End: Complemental strand, 14961599 - 14961558
Alignment:
Q  355 ataaacatatgtgaagtgcaattaataatcataaactactaa 396  Q
    ||||||||||||||| |||||| |||||||||||||||||||    
T  14961599 ataaacatatgtgaaatgcaatgaataatcataaactactaa 14961558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 172 - 224
Target Start/End: Complemental strand, 31264663 - 31264611
Alignment:
Q  172 ttagtctctaaattaggactccgtctgtctcaatccaacaaagattaaacaat 224  Q
    |||||||  ||||||||||||| | ||||||| ||||||||||||| ||||||    
T  31264663 ttagtcttaaaattaggactccatttgtctcattccaacaaagattgaacaat 31264611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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