View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17065_high_1 (Length: 903)

Name: NF17065_high_1
Description: NF17065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17065_high_1
NF17065_high_1
[»] chr5 (22 HSPs)
chr5 (15-734)||(7164105-7164841)
chr5 (736-884)||(7164949-7165097)
chr5 (119-252)||(1145793-1145926)
chr5 (178-266)||(17644501-17644591)
chr5 (610-721)||(17636343-17636454)
chr5 (610-695)||(11135766-11135851)
chr5 (647-702)||(6706040-6706095)
chr5 (178-242)||(40266534-40266598)
chr5 (643-721)||(6158944-6159021)
chr5 (647-720)||(34016002-34016075)
chr5 (538-584)||(7335621-7335667)
chr5 (107-168)||(25759856-25759917)
chr5 (107-168)||(25787842-25787903)
chr5 (120-165)||(33037385-33037430)
chr5 (643-702)||(17644601-17644660)
chr5 (118-168)||(40266589-40266639)
chr5 (647-720)||(759160-759233)
chr5 (119-168)||(1145169-1145218)
chr5 (643-684)||(6158131-6158172)
chr5 (178-219)||(17344802-17344843)
chr5 (607-692)||(23941350-23941435)
chr5 (121-190)||(40266401-40266470)
[»] chr7 (13 HSPs)
chr7 (173-239)||(149036-149102)
chr7 (86-192)||(26009368-26009470)
chr7 (647-702)||(38386192-38386247)
chr7 (107-213)||(23345002-23345108)
chr7 (178-239)||(28139384-28139445)
chr7 (647-702)||(5177-5232)
chr7 (647-720)||(19365400-19365473)
chr7 (647-723)||(5061733-5061809)
chr7 (87-146)||(28138759-28138814)
chr7 (122-168)||(28139436-28139482)
chr7 (178-219)||(16984391-16984432)
chr7 (178-239)||(18146190-18146251)
chr7 (107-152)||(25428747-25428792)
[»] chr4 (6 HSPs)
chr4 (647-721)||(55527918-55527992)
chr4 (643-708)||(27992127-27992192)
chr4 (647-702)||(12586803-12586857)
chr4 (647-702)||(24974151-24974206)
chr4 (643-702)||(27992305-27992364)
chr4 (647-722)||(45237409-45237484)
[»] chr3 (13 HSPs)
chr3 (119-195)||(35105960-35106031)
chr3 (647-702)||(15040699-15040754)
chr3 (118-219)||(2652368-2652469)
chr3 (119-195)||(50663903-50663979)
chr3 (643-721)||(54525801-54525879)
chr3 (107-167)||(8150185-8150245)
chr3 (643-722)||(3539666-3539745)
chr3 (647-702)||(7665751-7665806)
chr3 (178-213)||(26998262-26998297)
chr3 (118-168)||(40517001-40517051)
chr3 (178-219)||(3540183-3540224)
chr3 (643-720)||(26998288-26998365)
chr3 (665-722)||(35069469-35069526)
[»] chr2 (5 HSPs)
chr2 (118-237)||(9539010-9539129)
chr2 (87-168)||(12965049-12965126)
chr2 (647-702)||(8273263-8273318)
chr2 (178-293)||(12965117-12965238)
chr2 (178-213)||(28360093-28360128)
[»] chr1 (13 HSPs)
chr1 (647-702)||(28446535-28446590)
chr1 (647-702)||(28474810-28474865)
chr1 (171-221)||(5603128-5603178)
chr1 (647-704)||(35563376-35563433)
chr1 (608-712)||(37259319-37259423)
chr1 (665-720)||(48027119-48027174)
chr1 (178-219)||(10884458-10884499)
chr1 (178-219)||(42883723-42883764)
chr1 (118-194)||(5602971-5603047)
chr1 (119-198)||(9862863-9862942)
chr1 (647-702)||(33401426-33401481)
chr1 (647-693)||(35563532-35563578)
chr1 (205-278)||(4329008-4329081)
[»] chr8 (9 HSPs)
chr8 (643-712)||(33228884-33228953)
chr8 (121-194)||(3588370-3588443)
chr8 (647-702)||(5967242-5967297)
chr8 (118-168)||(3588546-3588596)
chr8 (647-721)||(31762240-31762314)
chr8 (647-721)||(34279566-34279640)
chr8 (107-168)||(1349063-1349124)
chr8 (178-242)||(3588493-3588555)
chr8 (178-239)||(32035816-32035877)
[»] chr6 (5 HSPs)
chr6 (186-247)||(807124-807185)
chr6 (119-164)||(14830420-14830465)
chr6 (647-702)||(32274202-32274257)
chr6 (119-165)||(31522539-31522585)
chr6 (119-164)||(17436546-17436591)
[»] scaffold0262 (1 HSPs)
scaffold0262 (643-692)||(8412-8461)


Alignment Details
Target: chr5 (Bit Score: 507; Significance: 0; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 507; E-Value: 0
Query Start/End: Original strand, 15 - 734
Target Start/End: Original strand, 7164105 - 7164841
Alignment:
Q  15 aatatggttctatacataaatccagaattaggcccaaatatttagtccaaatcaccttagttaatagtccacgaattctgctctttacccaaccaaacgt 114  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    ||||    
T  7164105 aatatggttctatacataaatccagatttaggcccaaatatttagtccaaatcaccttagttaatagtccacgaattctgctctttacctaa----acgt 7164200  T
Q  115 ttctgctcattcccaaagtaaatgaccaaaatgtccctacataagttaactcacattgcatgggttaactcacgctagtgttaaatttgcatgagttaat 214  Q
    ||||||||||||| ||||||||||||||||||| | |||||| ||||||||||| |||||||| ||||||||||||| ||||||||||||||||||||||    
T  7164201 ttctgctcattcctaaagtaaatgaccaaaatgcctctacatgagttaactcacgttgcatggattaactcacgctaatgttaaatttgcatgagttaat 7164300  T
Q  215 tcacgttgtgtgacttaagtcacgcagaaaaaacac--actaaaatccaacgtgtgttaactcacgtttgattttgtttcatccgatttaacacacattg 312  Q
    |||||  | |||||||||||||||||||||||||||  ||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||||||||    
T  7164301 tcacgccgcgtgacttaagtcacgcagaaaaaacacacactaaaacccaacgtgagttaactcacgtttgattttgtttcatccaatttaacacacattg 7164400  T
Q  313 aacacccatgatttttgaatggttgctttcatatatgtattttgctactcttcctctttgatcccctcaatttatagactcctagttctatacctgtaat 412  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7164401 aacacccatgatttttgaatggttgctttcatatatgtattttgctactcttcctctttgatcccctcaatttatagactcctagttctatacctgtaat 7164500  T
Q  413 tatacaccagtgtgacattatgataaaacttagttttgaatttttgtttgattgttgccgacatggaagaggaaggaaaaatgtttaacttatgataaca 512  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  7164501 tatacaccagtgtgacattttgataaaacttagttttgaatttttgtttgtttgttgccgacatggaagaggaaggaaaaatgtttaacttatgataaca 7164600  T
Q  513 tgcatagtgtgatagaacattgtttgatgaaacaaaacgagcgtgagttaactcatgc-------------------tgagttttagtgtggnnnnnnnn 593  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                   |||||||||||||||            
T  7164601 tgcatagtgtgatagaacattgtttgatgaaacaaaacgagcgtgagttaactcatgctgagtgaattaactcatgttgagttttagtgtggtttttttt 7164700  T
Q  594 gcgtgtcttaacacagcgtgtgttaactcacgttgtcatttacaccgatgtgagttaacatgcgtaagggtatttcagtcatttattttggaaatgagcg 693  Q
    ||||||||||| ||||||||||||||||||||||  ||||||||||| |||||||||| ||||||| || ||||| | ||||||||||||  ||||||||    
T  7164701 gcgtgtcttaatacagcgtgtgttaactcacgttaccatttacaccggtgtgagttaatatgcgtagggatattttaatcatttattttgagaatgagcg 7164800  T
Q  694 aatccatttaaataaagagtagaattcatagtccactatac 734  Q
    ||||||||| | |||||||||||||||||||||||||||||    
T  7164801 aatccatttgagtaaagagtagaattcatagtccactatac 7164841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 137; E-Value: 5e-71
Query Start/End: Original strand, 736 - 884
Target Start/End: Original strand, 7164949 - 7165097
Alignment:
Q  736 caaatcaacgtagctaaaaatttccattcccaacgtttctccaaagatcgtgtattttcgcgcgcattcgaacacaccgatcaagtgtttgattatttgc 835  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | |||||||||||||||||||    
T  7164949 caaatcaacgtagctaaaaatttccattcccaacgtttctccaaatatcgtgtattttcgcgcgcattcgaacacacccaccaagtgtttgattatttgc 7165048  T
Q  836 ctcactcaacaaagaacaaaacacttcctcattcatgatcctttaccac 884  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  7165049 ctcactcaacaaagaacaaaacacttcctcattcatgatcctttaccac 7165097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 119 - 252
Target Start/End: Complemental strand, 1145926 - 1145793
Alignment:
Q  119 gctcattcccaaagtaaatgaccaaaatgtccctacataagttaactcacattgcatgggttaactcacgctagtgttaaatttgcatgagttaattcac 218  Q
    ||||||||||||||||||||| ||||||| || ||||| |||||||| ||  | |||  |||||||||||||| ||| ||||||||||||||||| ||||    
T  1145926 gctcattcccaaagtaaatgatcaaaatgcccttacatgagttaacttacgctacattagttaactcacgctaatgtaaaatttgcatgagttaactcac 1145827  T
Q  219 gttgtgtgacttaagtcacgcagaaaaaacacac 252  Q
    | || ||| |||||||||||||||||||| ||||    
T  1145826 gctgcgtgtcttaagtcacgcagaaaaaatacac 1145793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 178 - 266
Target Start/End: Complemental strand, 17644591 - 17644501
Alignment:
Q  178 gttaactcacgctagtgttaaatttgcatgagttaattcacgttgtgtgacttaagtcacgcagaaaaa--acacactaaaatccaacgtg 266  Q
    ||||||||||||||||||||||||| |||||||||| ||||| || ||||||||| |||||||||||||  ||||||||||| || |||||    
T  17644591 gttaactcacgctagtgttaaatttacatgagttaactcacgctgcgtgacttaaatcacgcagaaaaatcacacactaaaacccgacgtg 17644501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 610 - 721
Target Start/End: Complemental strand, 17636454 - 17636343
Alignment:
Q  610 cgtgtgttaactcacgttgtcatttacaccgatgtgagttaacatgcgtaagggtatttcagtcatttattttggaaatgagcgaatccatttaaataaa 709  Q
    |||| |||||||||||||  ||||||||     ||||||||||||| ||| |||||||||| ||||||||||||| ||||||||||||||||||  |||     
T  17636454 cgtgagttaactcacgtttccatttacattagcgtgagttaacatgtgtaggggtatttcaatcatttattttgggaatgagcgaatccatttaggtaat 17636355  T
Q  710 gagtagaattca 721  Q
    ||| ||||||||    
T  17636354 gagcagaattca 17636343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 610 - 695
Target Start/End: Complemental strand, 11135851 - 11135766
Alignment:
Q  610 cgtgtgttaactcacgttgtcatttacaccgatgtgagttaacatgcgtaagggtatttcagtcatttattttggaaatgagcgaa 695  Q
    |||||||||||| |||||||||||| |||    || |||||||||||||| ||||||||  |||||||||||||||||||||||||    
T  11135851 cgtgtgttaacttacgttgtcatttgcactagcgtaagttaacatgcgtaggggtattttggtcatttattttggaaatgagcgaa 11135766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 647 - 702
Target Start/End: Original strand, 6706040 - 6706095
Alignment:
Q  647 gttaacatgcgtaagggtatttcagtcatttattttggaaatgagcgaatccattt 702  Q
    ||||||||||||| ||| |||||||||||||| |||||||||||||||||||||||    
T  6706040 gttaacatgcgtaggggcatttcagtcatttactttggaaatgagcgaatccattt 6706095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 178 - 242
Target Start/End: Complemental strand, 40266598 - 40266534
Alignment:
Q  178 gttaactcacgctagtgttaaatttgcatgagttaattcacgttgtgtgacttaagtcacgcaga 242  Q
    |||||||||||||| |||||||||||| |||||||| ||||| |  |||||||||||||||||||    
T  40266598 gttaactcacgctaatgttaaatttgcgtgagttaactcacgctacgtgacttaagtcacgcaga 40266534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 643 - 721
Target Start/End: Original strand, 6158944 - 6159021
Alignment:
Q  643 gtgagttaacatgcgtaagggtatttcagtcatttattttggaaatgagcgaatccatttaaataaagagtagaattca 721  Q
    |||||||||||| |||| |||||||| || |||||| ||||| ||||||||||||||||||| ||| ||| ||||||||    
T  6158944 gtgagttaacatacgta-gggtattttagacatttactttgggaatgagcgaatccatttaagtaatgagcagaattca 6159021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 647 - 720
Target Start/End: Complemental strand, 34016075 - 34016002
Alignment:
Q  647 gttaacatgcgtaagggtatttcagtcatttattttggaaatgagcgaatccatttaaataaagagtagaattc 720  Q
    ||||||||| ||| ||| |||||||||||||| ||||| ||||||||||||||||||  ||| ||| |||||||    
T  34016075 gttaacatgtgtaggggcatttcagtcatttactttgggaatgagcgaatccatttaggtaatgagcagaattc 34016002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 538 - 584
Target Start/End: Complemental strand, 7335667 - 7335621
Alignment:
Q  538 gatgaaacaaaacgagcgtgagttaactcatgctgagttttagtgtg 584  Q
    ||||||||||||| |||||||||||||||||| || |||||||||||    
T  7335667 gatgaaacaaaacaagcgtgagttaactcatgttgggttttagtgtg 7335621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 107 - 168
Target Start/End: Original strand, 25759856 - 25759917
Alignment:
Q  107 ccaaacgtttctgctcattcccaaagtaaatgaccaaaatgtccctacataagttaactcac 168  Q
    |||||||  |||||||||||| ||||||||||||||||||||| || | | |||||||||||    
T  25759856 ccaaacggatctgctcattcctaaagtaaatgaccaaaatgtctctgcgtgagttaactcac 25759917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 107 - 168
Target Start/End: Complemental strand, 25787903 - 25787842
Alignment:
Q  107 ccaaacgtttctgctcattcccaaagtaaatgaccaaaatgtccctacataagttaactcac 168  Q
    ||||||| || |||||||| ||||| ||||||||||||||| |||| ||| |||||||||||    
T  25787903 ccaaacggttatgctcatttccaaaataaatgaccaaaatgcccctgcatgagttaactcac 25787842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 120 - 165
Target Start/End: Complemental strand, 33037430 - 33037385
Alignment:
Q  120 ctcattcccaaagtaaatgaccaaaatgtccctacataagttaact 165  Q
    |||||||||||||||||||||||||||| ||||||| | |||||||    
T  33037430 ctcattcccaaagtaaatgaccaaaatgcccctacacatgttaact 33037385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 643 - 702
Target Start/End: Original strand, 17644601 - 17644660
Alignment:
Q  643 gtgagttaacatgcgtaagggtatttcagtcatttattttggaaatgagcgaatccattt 702  Q
    |||| |||||||||||| ||||||||  | |||||| ||||| |||||||||||||||||    
T  17644601 gtgaattaacatgcgtaggggtattttggacatttactttgggaatgagcgaatccattt 17644660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 118 - 168
Target Start/End: Complemental strand, 40266639 - 40266589
Alignment:
Q  118 tgctcattcccaaagtaaatgaccaaaatgtccctacataagttaactcac 168  Q
    |||||||||||||||||||||||||||||| || | | | |||||||||||    
T  40266639 tgctcattcccaaagtaaatgaccaaaatgcccatgcgtgagttaactcac 40266589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 647 - 720
Target Start/End: Complemental strand, 759233 - 759160
Alignment:
Q  647 gttaacatgcgtaagggtatttcagtcatttattttggaaatgagcgaatccatttaaataaagagtagaattc 720  Q
    ||||||||||||| | | ||||| |||||||| ||||| ||||| ||||||||||||  ||| ||| |||||||    
T  759233 gttaacatgcgtatgagcatttcggtcatttactttgggaatgatcgaatccatttaggtaatgagcagaattc 759160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 168
Target Start/End: Original strand, 1145169 - 1145218
Alignment:
Q  119 gctcattcccaaagtaaatgaccaaaatgtccctacataagttaactcac 168  Q
    ||||||||||||||||||||||||||||| | ||||  | ||||||||||    
T  1145169 gctcattcccaaagtaaatgaccaaaatgcctctacgcatgttaactcac 1145218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 643 - 684
Target Start/End: Complemental strand, 6158172 - 6158131
Alignment:
Q  643 gtgagttaacatgcgtaagggtatttcagtcatttattttgg 684  Q
    ||||||||||||||||| ||||||||| |||||||| |||||    
T  6158172 gtgagttaacatgcgtaggggtatttcggtcatttactttgg 6158131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 219
Target Start/End: Complemental strand, 17344843 - 17344802
Alignment:
Q  178 gttaactcacgctagtgttaaatttgcatgagttaattcacg 219  Q
    ||||||||||||||||||||| ||||| |||||||| |||||    
T  17344843 gttaactcacgctagtgttaattttgcgtgagttaactcacg 17344802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 607 - 692
Target Start/End: Complemental strand, 23941435 - 23941350
Alignment:
Q  607 cagcgtgtgttaactcacgttgtcatttacaccgatgtgagttaacatgcgtaagggtatttcagtcatttattttggaaatgagc 692  Q
    ||||||| |||||||||||||| |||||||||    || |||||| ||||||| ||| ||||| | |||||| ||||||| |||||    
T  23941435 cagcgtgagttaactcacgttgccatttacactagcgtaagttaatatgcgtaggggcatttctgacatttactttggaattgagc 23941350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 190
Target Start/End: Original strand, 40266401 - 40266470
Alignment:
Q  121 tcattcccaaagtaaatgaccaaaatgtccctacataagttaactcacattgcatgggttaactcacgct 190  Q
    ||||||||||||||||||||||||||| || | | | ||||||||| |   ||||| |||||||||||||    
T  40266401 tcattcccaaagtaaatgaccaaaatgcccatgcgtgagttaactcccgcagcatgagttaactcacgct 40266470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 2e-17; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 173 - 239
Target Start/End: Original strand, 149036 - 149102
Alignment:
Q  173 catgggttaactcacgctagtgttaaatttgcatgagttaattcacgttgtgtgacttaagtcacgc 239  Q
    |||| ||||||||||||||||||||||||||| |||||||| ||||||||  |||||||||||||||    
T  149036 catgagttaactcacgctagtgttaaatttgcgtgagttaagtcacgttgcatgacttaagtcacgc 149102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 86 - 192
Target Start/End: Original strand, 26009368 - 26009470
Alignment:
Q  86 cgaattctgctctttacccaaccaaacgtttctgctcattcccaaagtaaatgaccaaaatgtccctacataagttaactcacattgcatgggttaactc 185  Q
    |||||||||||||||||||||    ||| || ||||||||||||||||||||||||||||| | |||||  | |||||||||| | || || || |||||    
T  26009368 cgaattctgctctttacccaa----acgattttgctcattcccaaagtaaatgaccaaaatattcctacgcatgttaactcacgtagcgtgagtcaactc 26009463  T
Q  186 acgctag 192  Q
    |||||||    
T  26009464 acgctag 26009470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 647 - 702
Target Start/End: Complemental strand, 38386247 - 38386192
Alignment:
Q  647 gttaacatgcgtaagggtatttcagtcatttattttggaaatgagcgaatccattt 702  Q
    ||||||||||||| ||| |||||| ||||||| |||||||||||||||||||||||    
T  38386247 gttaacatgcgtaggggcatttcaatcatttactttggaaatgagcgaatccattt 38386192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 107 - 213
Target Start/End: Complemental strand, 23345108 - 23345002
Alignment:
Q  107 ccaaacgtttctgctcattcccaaagtaaatgaccaaaatgtccctacataagttaactcacattgcatgggttaactcacgctagtgttaaatttgcat 206  Q
    ||||||| || |||||||||||||| ||||||  || | || || | | |||||||||||||  |||||| |||||||||| |||||||||||||||| |    
T  23345108 ccaaacgattttgctcattcccaaaataaatgttcatattgcccatgcgtaagttaactcacgctgcatgagttaactcacactagtgttaaatttgcgt 23345009  T
Q  207 gagttaa 213  Q
    || ||||    
T  23345008 gaattaa 23345002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 178 - 239
Target Start/End: Complemental strand, 28139445 - 28139384
Alignment:
Q  178 gttaactcacgctagtgttaaatttgcatgagttaattcacgttgtgtgacttaagtcacgc 239  Q
    |||||||||||||||||||||||||||||||||||| | ||| || |||| |||| ||||||    
T  28139445 gttaactcacgctagtgttaaatttgcatgagttaagttacgctgcgtgagttaactcacgc 28139384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 647 - 702
Target Start/End: Original strand, 5177 - 5232
Alignment:
Q  647 gttaacatgcgtaagggtatttcagtcatttattttggaaatgagcgaatccattt 702  Q
    ||||||||||||| ||| ||||| |||||||| ||||| |||||||||||||||||    
T  5177 gttaacatgcgtaggggcatttcggtcatttactttgggaatgagcgaatccattt 5232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 647 - 720
Target Start/End: Original strand, 19365400 - 19365473
Alignment:
Q  647 gttaacatgcgtaagggtatttcagtcatttattttggaaatgagcgaatccatttaaataaagagtagaattc 720  Q
    ||||| ||||||| ||||||||| |||||||  ||||| ||||||||||||||||||  ||| ||| |||||||    
T  19365400 gttaaaatgcgtaggggtatttcggtcattttatttgggaatgagcgaatccatttaggtaatgagcagaattc 19365473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 647 - 723
Target Start/End: Original strand, 5061733 - 5061809
Alignment:
Q  647 gttaacatgcgtaagggtatttcagtcatttattttggaaatgagcgaatccatttaaataaagagtagaattcata 723  Q
    |||||||||||||| |  |||||  |||||||||||||||||||| ||||||||||   ||| ||| ||||||||||    
T  5061733 gttaacatgcgtaacgacatttcgttcatttattttggaaatgagtgaatccatttgggtaatgagcagaattcata 5061809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 87 - 146
Target Start/End: Original strand, 28138759 - 28138814
Alignment:
Q  87 gaattctgctctttacccaaccaaacgtttctgctcattcccaaagtaaatgaccaaaat 146  Q
    ||||||||||||||||||||    | | || |||||||||||||||||||||||||||||    
T  28138759 gaattctgctctttacccaa----atgattttgctcattcccaaagtaaatgaccaaaat 28138814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 122 - 168
Target Start/End: Complemental strand, 28139482 - 28139436
Alignment:
Q  122 cattcccaaagtaaatgaccaaaatgtccctacataagttaactcac 168  Q
    |||||||||||||||||||||||||| |||| | | |||||||||||    
T  28139482 cattcccaaagtaaatgaccaaaatgcccctgcgtgagttaactcac 28139436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 219
Target Start/End: Original strand, 16984391 - 16984432
Alignment:
Q  178 gttaactcacgctagtgttaaatttgcatgagttaattcacg 219  Q
    ||||||||||||||||||||||| ||| |||||||| |||||    
T  16984391 gttaactcacgctagtgttaaatatgcgtgagttaactcacg 16984432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 239
Target Start/End: Original strand, 18146190 - 18146251
Alignment:
Q  178 gttaactcacgctagtgttaaatttgcatgagttaattcacgttgtgtgacttaagtcacgc 239  Q
    ||||||||| ||||||||||||||||  || ||||| |||||||| | || |||||||||||    
T  18146190 gttaactcatgctagtgttaaatttgtgtgggttaagtcacgttgcgagagttaagtcacgc 18146251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 152
Target Start/End: Original strand, 25428747 - 25428792
Alignment:
Q  107 ccaaacgtttctgctcattcccaaagtaaatgaccaaaatgtccct 152  Q
    ||||||| |||||||||||||||||||||||  |||||||| ||||    
T  25428747 ccaaacggttctgctcattcccaaagtaaatatccaaaatgcccct 25428792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 2e-17; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 647 - 721
Target Start/End: Original strand, 55527918 - 55527992
Alignment:
Q  647 gttaacatgcgtaagggtatttcagtcatttattttggaaatgagcgaatccatttaaataaagagtagaattca 721  Q
    ||||||||||||| ||| ||||| |||||||  ||||||||||||||||||||||||||||| ||| ||||||||    
T  55527918 gttaacatgcgtaggggcatttcggtcatttgctttggaaatgagcgaatccatttaaataatgagcagaattca 55527992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 643 - 708
Target Start/End: Complemental strand, 27992192 - 27992127
Alignment:
Q  643 gtgagttaacatgcgtaagggtatttcagtcatttattttggaaatgagcgaatccatttaaataa 708  Q
    |||||||||||||| || ||| ||||| |||||||| ||||| ||||||| ||||||||| |||||    
T  27992192 gtgagttaacatgcttaggggcatttcggtcatttactttgggaatgagcaaatccatttgaataa 27992127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 647 - 702
Target Start/End: Original strand, 12586803 - 12586857
Alignment:
Q  647 gttaacatgcgtaagggtatttcagtcatttattttggaaatgagcgaatccattt 702  Q
    ||||||||||||| ||  ||||| ||||||||||| ||||||||||||||||||||    
T  12586803 gttaacatgcgtagggacatttcggtcatttattt-ggaaatgagcgaatccattt 12586857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 647 - 702
Target Start/End: Original strand, 24974151 - 24974206
Alignment:
Q  647 gttaacatgcgtaagggtatttcagtcatttattttggaaatgagcgaatccattt 702  Q
    ||||||||||||| ||| ||||| |||||||| ||||| ||||||| |||||||||    
T  24974151 gttaacatgcgtaggggcatttcggtcatttactttgggaatgagcaaatccattt 24974206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 643 - 702
Target Start/End: Original strand, 27992305 - 27992364
Alignment:
Q  643 gtgagttaacatgcgtaagggtatttcagtcatttattttggaaatgagcgaatccattt 702  Q
    |||||||||||||| || ||||||||  | |||||||||| ||||||||| |||||||||    
T  27992305 gtgagttaacatgcataggggtattttggacatttattttagaaatgagcaaatccattt 27992364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 647 - 722
Target Start/End: Complemental strand, 45237484 - 45237409
Alignment:
Q  647 gttaacatgcgtaagggtatttcagtcatttattttggaaatgagcgaatccatttaaataaagagtagaattcat 722  Q
    |||||||||| || ||| |||||||| ||||| ||| ||||| ||||||||||||| | ||| ||| |||||||||    
T  45237484 gttaacatgcataggggcatttcagttatttactttagaaataagcgaatccatttgagtaatgagcagaattcat 45237409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 119 - 195
Target Start/End: Complemental strand, 35106031 - 35105960
Alignment:
Q  119 gctcattcccaaagtaaatgaccaaaatgtccctacataagttaactcacattgcatgggttaactcacgctagtgt 195  Q
    ||||||||||||||||||||||||||||||| |||||| ||||||||     ||| || ||||||||||||||||||    
T  35106031 gctcattcccaaagtaaatgaccaaaatgtcactacatgagttaact-----tgcgtgagttaactcacgctagtgt 35105960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 647 - 702
Target Start/End: Complemental strand, 15040754 - 15040699
Alignment:
Q  647 gttaacatgcgtaagggtatttcagtcatttattttggaaatgagcgaatccattt 702  Q
    ||||||||||||| ||| |||||||||||||| ||||| |||||||||||||||||    
T  15040754 gttaacatgcgtaggggcatttcagtcatttactttgggaatgagcgaatccattt 15040699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 118 - 219
Target Start/End: Original strand, 2652368 - 2652469
Alignment:
Q  118 tgctcattcccaaagtaaatgaccaaaatgtccctacataagttaactcacattgcatgggttaactcacgctagtgttaaatttgcatgagttaattca 217  Q
    ||||| || |||||||||||| | | | || |||||| ||||||||||  |  ||| || ||||||||||||||||||||||||||||||| |||| |||    
T  2652368 tgctcgtttccaaagtaaatgtctatattgcccctacgtaagttaacttgcgctgcgtgagttaactcacgctagtgttaaatttgcatgacttaactca 2652467  T
Q  218 cg 219  Q
    ||    
T  2652468 cg 2652469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 119 - 195
Target Start/End: Original strand, 50663903 - 50663979
Alignment:
Q  119 gctcattcccaaagtaaatgaccaaaatgtccctacataagttaactcacattgcatgggttaactcacgctagtgt 195  Q
    ||||||||||||||||||| ||||||||| ||||||  | |||||||||| | || || ||||||||| ||||||||    
T  50663903 gctcattcccaaagtaaataaccaaaatgcccctacgcatgttaactcacgtagcgtgagttaactcaagctagtgt 50663979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 643 - 721
Target Start/End: Complemental strand, 54525879 - 54525801
Alignment:
Q  643 gtgagttaacatgcgtaagggtatttcagtcatttattttggaaatgagcgaatccatttaaataaagagtagaattca 721  Q
    ||||||||| || | || || ||||||||||||||| |||||||||||||||||| |||||  ||||||| | ||||||    
T  54525879 gtgagttaatatacatagggatatttcagtcatttactttggaaatgagcgaatcaatttaggtaaagagcataattca 54525801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 107 - 167
Target Start/End: Original strand, 8150185 - 8150245
Alignment:
Q  107 ccaaacgtttctgctcattcccaaagtaaatgaccaaaatgtccctacataagttaactca 167  Q
    |||||||||| ||||||||||||||| || ||||||||||  |||||| || |||||||||    
T  8150185 ccaaacgtttttgctcattcccaaagaaactgaccaaaatacccctacgtatgttaactca 8150245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 643 - 722
Target Start/End: Complemental strand, 3539745 - 3539666
Alignment:
Q  643 gtgagttaacatgcgtaagggtatttcagtcatttattttggaaatgagcgaatccatttaaataaagagtagaattcat 722  Q
    ||||||||||||| ||| || |||||   ||||||||||||||||||||| || ||||||  |||||||| | |||||||    
T  3539745 gtgagttaacatgtgtagggctattttgatcatttattttggaaatgagcaaaaccatttggataaagagcataattcat 3539666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 647 - 702
Target Start/End: Complemental strand, 7665806 - 7665751
Alignment:
Q  647 gttaacatgcgtaagggtatttcagtcatttattttggaaatgagcgaatccattt 702  Q
    |||||||||| |||||| ||||| |||||||| ||||  |||||||||||||||||    
T  7665806 gttaacatgcataagggcatttcggtcatttactttgcgaatgagcgaatccattt 7665751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 213
Target Start/End: Complemental strand, 26998297 - 26998262
Alignment:
Q  178 gttaactcacgctagtgttaaatttgcatgagttaa 213  Q
    ||||||||||||||||||||||||| ||||||||||    
T  26998297 gttaactcacgctagtgttaaatttacatgagttaa 26998262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 118 - 168
Target Start/End: Original strand, 40517001 - 40517051
Alignment:
Q  118 tgctcattcccaaagtaaatgaccaaaatgtccctacataagttaactcac 168  Q
    |||||||||| ||||||||||| ||||||||| |||| |||||||| ||||    
T  40517001 tgctcattcctaaagtaaatgatcaaaatgtctctacgtaagttaagtcac 40517051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 219
Target Start/End: Complemental strand, 3540224 - 3540183
Alignment:
Q  178 gttaactcacgctagtgttaaatttgcatgagttaattcacg 219  Q
    ||||| ||||||||||||||||||||||||| |||| |||||    
T  3540224 gttaagtcacgctagtgttaaatttgcatgacttaactcacg 3540183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 643 - 720
Target Start/End: Original strand, 26998288 - 26998365
Alignment:
Q  643 gtgagttaacatgcgtaagggtatttcagtcatttattttggaaatgagcgaatccatttaaataaagagtagaattc 720  Q
    ||||||||||||| ||| || |||||   ||||||||||| |||||||||||| ||||||  || ||||| |||||||    
T  26998288 gtgagttaacatgtgtagggatattttgatcatttattttagaaatgagcgaaaccatttggatgaagagcagaattc 26998365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 665 - 722
Target Start/End: Original strand, 35069469 - 35069526
Alignment:
Q  665 atttcagtcatttattttggaaatgagcgaatccatttaaataaagagtagaattcat 722  Q
    ||||| |||||||| ||| ||||||| |||||||||||| |||| ||| |||||||||    
T  35069469 atttcggtcatttactttagaaatgaacgaatccatttagataatgagcagaattcat 35069526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 118 - 237
Target Start/End: Complemental strand, 9539129 - 9539010
Alignment:
Q  118 tgctcattcccaaagtaaatgaccaaaatgtccctacataagttaactcacattgcatgggttaactcacgctagtgttaaatttgcatgagttaattca 217  Q
    |||||||||||||||||||||  || | || |||| ||||||||||||  |||||  || |||||  ||||||||||||||||||||||||  | | |||    
T  9539129 tgctcattcccaaagtaaatgttcatattgcccctgcataagttaacttgcattgtgtgagttaaaacacgctagtgttaaatttgcatgacgtgactca 9539030  T
Q  218 cgttgtgtgacttaagtcac 237  Q
    ||| | |||| |||||||||    
T  9539029 cgtagcgtgagttaagtcac 9539010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 87 - 168
Target Start/End: Original strand, 12965049 - 12965126
Alignment:
Q  87 gaattctgctctttacccaaccaaacgtttctgctcattcccaaagtaaatgaccaaaatgtccctacataagttaactcac 168  Q
    ||||||||||||||||||||    |||||||||||||||  |||||||||||| |||||||  ||||| | |||||||||||    
T  12965049 gaattctgctctttacccaa----acgtttctgctcattttcaaagtaaatgatcaaaatgctcctacgtgagttaactcac 12965126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 647 - 702
Target Start/End: Complemental strand, 8273318 - 8273263
Alignment:
Q  647 gttaacatgcgtaagggtatttcagtcatttattttggaaatgagcgaatccattt 702  Q
    ||||||||||||| ||| ||||| |||||||| ||||| |||||||||||||||||    
T  8273318 gttaacatgcgtaggggcatttcggtcatttactttgggaatgagcgaatccattt 8273263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 293
Target Start/End: Original strand, 12965117 - 12965238
Alignment:
Q  178 gttaactcacgctagtgttaaatttgcatgagttaattcacgttgtgtg-----acttaagtcacgcagaaaaaacacact--aaaatccaacgtgtgtt 270  Q
    |||||||||||||| |||||||||| |  ||||||| ||||| || |||     ||||||||||||||| |||||||||||  |||| ||| | || |||    
T  12965117 gttaactcacgctaatgttaaatttacgagagttaactcacgctgcgtgagataacttaagtcacgcaggaaaaacacactcaaaaacccagcatgagtt 12965216  T
Q  271 aactcacgtttgattttgtttca 293  Q
    ||||||||  |||||||||||||    
T  12965217 aactcacg-ctgattttgtttca 12965238  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 213
Target Start/End: Original strand, 28360093 - 28360128
Alignment:
Q  178 gttaactcacgctagtgttaaatttgcatgagttaa 213  Q
    ||||||||||||||||||||||||||| ||||||||    
T  28360093 gttaactcacgctagtgttaaatttgcgtgagttaa 28360128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 647 - 702
Target Start/End: Original strand, 28446535 - 28446590
Alignment:
Q  647 gttaacatgcgtaagggtatttcagtcatttattttggaaatgagcgaatccattt 702  Q
    ||||||||||||| ||| |||||||||||||| ||||| |||||||||||||||||    
T  28446535 gttaacatgcgtaggggcatttcagtcatttactttgggaatgagcgaatccattt 28446590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 647 - 702
Target Start/End: Complemental strand, 28474865 - 28474810
Alignment:
Q  647 gttaacatgcgtaagggtatttcagtcatttattttggaaatgagcgaatccattt 702  Q
    ||||||||||||| ||| |||||||||||||||||||| |||||| ||||||||||    
T  28474865 gttaacatgcgtaggggcatttcagtcatttattttgggaatgagtgaatccattt 28474810  T

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Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 171 - 221
Target Start/End: Complemental strand, 5603178 - 5603128
Alignment:
Q  171 tgcatgggttaactcacgctagtgttaaatttgcatgagttaattcacgtt 221  Q
    |||||| ||||||||||||||||||||||||||| |||||||| |||||||    
T  5603178 tgcatgagttaactcacgctagtgttaaatttgcgtgagttaactcacgtt 5603128  T

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Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 647 - 704
Target Start/End: Complemental strand, 35563433 - 35563376
Alignment:
Q  647 gttaacatgcgtaagggtatttcagtcatttattttggaaatgagcgaatccatttaa 704  Q
    ||||||||||| | ||| |||||||||||||| ||||| |||||||||||||||||||    
T  35563433 gttaacatgcgcaggggcatttcagtcatttactttgggaatgagcgaatccatttaa 35563376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 608 - 712
Target Start/End: Complemental strand, 37259423 - 37259319
Alignment:
Q  608 agcgtgtgttaactcacgttgtcatttacaccgatgtgagttaacatgcgtaagggtatttcagtcatttattttggaaatgagcgaatccatttaaata 707  Q
    |||||| |||||||||||||| |||||||||    |||| ||||||| |||| | | ||||||| |||||| ||||||||||||| || || |||| |||    
T  37259423 agcgtgagttaactcacgttgccatttacactagcgtgaattaacatacgtaggagcatttcagacatttactttggaaatgagcaaaaccgtttagata 37259324  T
Q  708 aagag 712  Q
    |||||    
T  37259323 aagag 37259319  T

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Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 665 - 720
Target Start/End: Original strand, 48027119 - 48027174
Alignment:
Q  665 atttcagtcatttattttggaaatgagcgaatccatttaaataaagagtagaattc 720  Q
    ||||| |||||||||| | ||||||||||||||||||||| ||||||| |||||||    
T  48027119 atttcggtcatttattatagaaatgagcgaatccatttaactaaagagcagaattc 48027174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 219
Target Start/End: Complemental strand, 10884499 - 10884458
Alignment:
Q  178 gttaactcacgctagtgttaaatttgcatgagttaattcacg 219  Q
    ||||||||||||||||||||||||||| |||||||| |||||    
T  10884499 gttaactcacgctagtgttaaatttgcgtgagttaactcacg 10884458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 219
Target Start/End: Complemental strand, 42883764 - 42883723
Alignment:
Q  178 gttaactcacgctagtgttaaatttgcatgagttaattcacg 219  Q
    |||||||||||| ||||||||||||||||||||||| |||||    
T  42883764 gttaactcacgcaagtgttaaatttgcatgagttaactcacg 42883723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 118 - 194
Target Start/End: Original strand, 5602971 - 5603047
Alignment:
Q  118 tgctcattcccaaagtaaatgaccaaaatgtccctacataagttaactcacattgcatgggttaactcacgctagtg 194  Q
    |||||||||||||||||||||||||||||| ||||   | ||||||||| |   | ||| |||||||||||||||||    
T  5602971 tgctcattcccaaagtaaatgaccaaaatgcccctgtgtgagttaactcccgcagtatgagttaactcacgctagtg 5603047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 198
Target Start/End: Complemental strand, 9862942 - 9862863
Alignment:
Q  119 gctcattcccaaagtaaatgaccaaaatgtccctacataagttaactcacattgcatgggttaactcacgctagtgttaa 198  Q
    ||||||||||||| |||||| | ||||||||| ||| ||| |||| |||| ||   || |||||||||||||||||||||    
T  9862942 gctcattcccaaaataaatgtctaaaatgtccttacgtaacttaagtcacgttatgtgagttaactcacgctagtgttaa 9862863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 647 - 702
Target Start/End: Complemental strand, 33401481 - 33401426
Alignment:
Q  647 gttaacatgcgtaagggtatttcagtcatttattttggaaatgagcgaatccattt 702  Q
    |||||||||| |||||| ||||| |||||||| ||||  |||||||||||||||||    
T  33401481 gttaacatgcataagggcatttcggtcatttactttgagaatgagcgaatccattt 33401426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 647 - 693
Target Start/End: Complemental strand, 35563578 - 35563532
Alignment:
Q  647 gttaacatgcgtaagggtatttcagtcatttattttggaaatgagcg 693  Q
    ||||||||||||| ||| |||||||||||||| ||||| ||||||||    
T  35563578 gttaacatgcgtaggggcatttcagtcatttactttgggaatgagcg 35563532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 278
Target Start/End: Complemental strand, 4329081 - 4329008
Alignment:
Q  205 atgagttaattcacgttgtgtgacttaagtcacgcagaaaaaacacactaaaatccaacgtgtgttaactcacg 278  Q
    |||| |||| ||||| || ||||||||| | ||| |||||| ||||||||||| ||| |||| |||||||||||    
T  4329081 atgaattaactcacgctgcgtgacttaaattacgaagaaaacacacactaaaacccagcgtgagttaactcacg 4329008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000005; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 643 - 712
Target Start/End: Original strand, 33228884 - 33228953
Alignment:
Q  643 gtgagttaacatgcgtaagggtatttcagtcatttattttggaaatgagcgaatccatttaaataaagag 712  Q
    ||||||||||||| ||| |||||| || |||||||| ||||||||||||| ||||||||| | |||||||    
T  33228884 gtgagttaacatgtgtaggggtatatccgtcatttactttggaaatgagcaaatccatttgagtaaagag 33228953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 194
Target Start/End: Original strand, 3588370 - 3588443
Alignment:
Q  121 tcattcccaaagtaaatgaccaaaatgtccctacataagttaactcacattgcatgggttaactcacgctagtg 194  Q
    |||||| |||||||||||||||||||  ||||| || ||||||||| | | ||||| |||||||| ||||||||    
T  3588370 tcattctcaaagtaaatgaccaaaataaccctatatgagttaactcccgtagcatgagttaactcccgctagtg 3588443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 647 - 702
Target Start/End: Original strand, 5967242 - 5967297
Alignment:
Q  647 gttaacatgcgtaagggtatttcagtcatttattttggaaatgagcgaatccattt 702  Q
    ||||||||||||| ||| |||||  ||||||| ||||| |||||||||||||||||    
T  5967242 gttaacatgcgtaggggcatttcgatcatttactttgggaatgagcgaatccattt 5967297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 118 - 168
Target Start/End: Complemental strand, 3588596 - 3588546
Alignment:
Q  118 tgctcattcccaaagtaaatgaccaaaatgtccctacataagttaactcac 168  Q
    |||||||||||||| ||||||||||||||| |||| | | |||||||||||    
T  3588596 tgctcattcccaaattaaatgaccaaaatgcccctgcgtgagttaactcac 3588546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 647 - 721
Target Start/End: Complemental strand, 31762314 - 31762240
Alignment:
Q  647 gttaacatgcgtaagggtatttcagtcatttattttggaaatgagcgaatccatttaaataaagagtagaattca 721  Q
    |||||||||| || || ||||||  | ||||| ||||| ||||||||||||||||| ||||| ||| ||||||||    
T  31762314 gttaacatgcatagggatatttcgtttatttactttgggaatgagcgaatccatttgaataatgagcagaattca 31762240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 647 - 721
Target Start/End: Original strand, 34279566 - 34279640
Alignment:
Q  647 gttaacatgcgtaagggtatttcagtcatttattttggaaatgagcgaatccatttaaataaagagtagaattca 721  Q
    ||||||||| ||| ||| |||||  ||||||| ||| | ||||||||||||||||||| ||| ||| ||||||||    
T  34279566 gttaacatgtgtaggggcatttcgatcatttactttaggaatgagcgaatccatttaagtaatgagcagaattca 34279640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 168
Target Start/End: Original strand, 1349063 - 1349124
Alignment:
Q  107 ccaaacgtttctgctcattcccaaagtaaatgaccaaaatgtccctacataagttaactcac 168  Q
    ||||| |||| |||||||||||||   ||||||||||||||||||| | | |||||||||||    
T  1349063 ccaaaagtttttgctcattcccaagtgaaatgaccaaaatgtccctgcgtgagttaactcac 1349124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 242
Target Start/End: Complemental strand, 3588555 - 3588493
Alignment:
Q  178 gttaactcacgctagtgttaaatttgcatgagttaattcacgttgtgtgacttaagtcacgcaga 242  Q
    ||||||||||||||||||||||||||  |||||||| ||||| |  |||| | ||||||||||||    
T  3588555 gttaactcacgctagtgttaaatttg--tgagttaactcacgctacgtgagtcaagtcacgcaga 3588493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 239
Target Start/End: Original strand, 32035816 - 32035877
Alignment:
Q  178 gttaactcacgctagtgttaaatttgcatgagttaattcacgttgtgtgacttaagtcacgc 239  Q
    |||||||||||||||||||||| ||| |||| ||||| |||| || |||| |||| ||||||    
T  32035816 gttaactcacgctagtgttaaaattgtatgacttaatccacgctgcgtgagttaactcacgc 32035877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000005; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 186 - 247
Target Start/End: Complemental strand, 807185 - 807124
Alignment:
Q  186 acgctagtgttaaatttgcatgagttaattcacgttgtgtgacttaagtcacgcagaaaaaa 247  Q
    ||||||||||||||||||| |||||||| ||||  || ||||||||||||||||| ||||||    
T  807185 acgctagtgttaaatttgcgtgagttaactcacactgcgtgacttaagtcacgcaaaaaaaa 807124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 119 - 164
Target Start/End: Original strand, 14830420 - 14830465
Alignment:
Q  119 gctcattcccaaagtaaatgaccaaaatgtccctacataagttaac 164  Q
    |||||||||||||||||||| |||||||||||||||| | ||||||    
T  14830420 gctcattcccaaagtaaatgtccaaaatgtccctacacatgttaac 14830465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 647 - 702
Target Start/End: Complemental strand, 32274257 - 32274202
Alignment:
Q  647 gttaacatgcgtaagggtatttcagtcatttattttggaaatgagcgaatccattt 702  Q
    ||||||||||||| ||| |||||  ||||||| ||||| |||||||||||||||||    
T  32274257 gttaacatgcgtaggggcatttcgatcatttactttgggaatgagcgaatccattt 32274202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 119 - 165
Target Start/End: Complemental strand, 31522585 - 31522539
Alignment:
Q  119 gctcattcccaaagtaaatgaccaaaatgtccctacataagttaact 165  Q
    ||||||||||||||||||||||| ||||| ||||||  |||||||||    
T  31522585 gctcattcccaaagtaaatgaccgaaatgcccctacgcaagttaact 31522539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 164
Target Start/End: Complemental strand, 17436591 - 17436546
Alignment:
Q  119 gctcattcccaaagtaaatgaccaaaatgtccctacataagttaac 164  Q
    |||| |||||||||||||||||| ||||||||||||| | ||||||    
T  17436591 gctcgttcccaaagtaaatgaccgaaatgtccctacacatgttaac 17436546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0262 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 643 - 692
Target Start/End: Complemental strand, 8461 - 8412
Alignment:
Q  643 gtgagttaacatgcgtaagggtatttcagtcatttattttggaaatgagc 692  Q
    |||||||||||||||||||||||||| |  |||||| ||| |||||||||    
T  8461 gtgagttaacatgcgtaagggtattttacacatttactttagaaatgagc 8412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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