View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17065_high_10 (Length: 335)
Name: NF17065_high_10
Description: NF17065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17065_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 298; Significance: 1e-167; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 19 - 324
Target Start/End: Original strand, 54895981 - 54896286
Alignment:
| Q |
19 |
aaattgaccaaatgaaaaagaaaggcaacgaaccattatacttgcatgtgagaagatgcttctccagcactttgagactagtctgatcatcatcaacagc |
118 |
Q |
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| T |
54895981 |
aaattgaccaaatgaaaaagaaaggcaacgaaccattatacttgcatgtgagaagatgcttctccagcactttgagactagtctgatcatcatcaacagc |
54896080 |
T |
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| Q |
119 |
cagaacacgcataccaactggaaaaccttcttctgtaacatcttcacccaccaaacgatcctccacagccatcataaaccagaaaacaaataaacaaaac |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54896081 |
cagaacacgcataccaactggaaaaccttcttctgtaacatcttcacccaccaaacgatcctccacagccatcataaaccagaaaacaaataaacaaaac |
54896180 |
T |
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| Q |
219 |
agaaaacaagtatattgattagtgatcaaacaaataacacacgaataagttcaagaaaaggcctagagagaaaaatgcaaatatatttaatggctttgtt |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
54896181 |
agaaaacaagtatattgattagtgatcaaacaaataacacacgaataagttcaagaaaagacctagagagaaaaatgcaaatatatttaatggctttgtt |
54896280 |
T |
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| Q |
319 |
cccttt |
324 |
Q |
| |
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| |||| |
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| T |
54896281 |
ctcttt |
54896286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 45 - 302
Target Start/End: Original strand, 54890694 - 54890955
Alignment:
| Q |
45 |
aacgaaccattatacttgcatgtgagaagatgcttctccagcactttgagactagtctgatcatcatcaacagccagaacacgcataccaactggaaaac |
144 |
Q |
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| T |
54890694 |
aacgaaccattatacttgcacataagaagaaacttctccaacagtttgagacaagtttgatcgtcatcaacagccagaacacgcatacccaccggaaaat |
54890793 |
T |
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| Q |
145 |
cttcttctgta-acatcttcacccaccaaacgatcctccacagccatcataaaccagaaaacaaataaacaaaacagaaaacaagtatattgattagtga |
243 |
Q |
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| T |
54890794 |
cttc-tctgaagacattttcaacctccaaaggattctccacagccatcgtgaaccag-aatcaaatatccaaaacagaaaacaag--tattgatcagtga |
54890889 |
T |
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| Q |
244 |
tcaaacaaataacacacgaataagt-------tcaagaaaaggcctagagagaaaaatgcaaatat |
302 |
Q |
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||| |||||| |||| |||| |||| ||||||||||||||||||||||||| ||||||| |
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| T |
54890890 |
tcagacaaatcacactcgaaaaagttccaaactcaagaaaaggcctagagagaaaaacacaaatat |
54890955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 32 - 149
Target Start/End: Original strand, 54907252 - 54907369
Alignment:
| Q |
32 |
gaaaaagaaaggcaacgaaccattatacttgcatgtgagaagatgcttctccagcactttgagactagtctgatcatcatcaacagccagaacacgcata |
131 |
Q |
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||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| ||| |||| |||||||| ||||||||||||||| |
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| T |
54907252 |
gaaaaagaaaggcaacgaaccattatagttgcatgtgagaagttgcttctccagcactttgagataagttggatcgtcatcaactgccagaacacgcata |
54907351 |
T |
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| Q |
132 |
ccaactggaaaaccttct |
149 |
Q |
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|| | |||||||||||| |
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| T |
54907352 |
cccgccggaaaaccttct |
54907369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 108 - 144
Target Start/End: Complemental strand, 22084579 - 22084543
Alignment:
| Q |
108 |
tcatcaacagccagaacacgcataccaactggaaaac |
144 |
Q |
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||||||||||| ||||||||||||||||| ||||||| |
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| T |
22084579 |
tcatcaacagcaagaacacgcataccaacaggaaaac |
22084543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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