View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17065_high_12 (Length: 278)
Name: NF17065_high_12
Description: NF17065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17065_high_12 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 7 - 278
Target Start/End: Original strand, 26880834 - 26881105
Alignment:
| Q |
7 |
aattttaagaacaattaatcacctaaggctcactaccatcagggttgaaaatcctcatcgtatagtcagtgccattgataccaggcaagacaaatataac |
106 |
Q |
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| T |
26880834 |
aattttaagaagaattaatcacctcaggctcactaccatcagagttgaaaatcctcattgtatagtcagtgccattgataccaggcaagacaaatataac |
26880933 |
T |
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| Q |
107 |
tccatcagcaccaacactgaagttacgatcacagagttgcacagctttcacggaactaatctttggctcagaagagtctctattatcaatctattcataa |
206 |
Q |
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| T |
26880934 |
ttcatctgcaccaacactgaagttacgatcacagagttgcacaactttctcggaactaatctttggctcagaagagtctctattatcgatctattcataa |
26881033 |
T |
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| Q |
207 |
gagaaaatatcataaaaacttaaaagggagtgttattttatgggaggaatcagagaggaatgtggactcacc |
278 |
Q |
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| T |
26881034 |
gagaaaatatcataaaaacttaaaagggagtgttattttatgggaggaatcagagaggaatgtggactcacc |
26881105 |
T |
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Target: chr7; HSP #2
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 27 - 206
Target Start/End: Original strand, 40252464 - 40252643
Alignment:
| Q |
27 |
acctaaggctcactaccatcagggttgaaaatcctcatcgtatagtcagtgccattgataccaggcaagacaaatataactccatcagcaccaacactga |
126 |
Q |
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|||| ||||||||||||||||| ||||||||||||||| ||||| ||||| |||| |||||||||||| ||||| |||||||||||||||||||||| | |
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| T |
40252464 |
acctcaggctcactaccatcagagttgaaaatcctcattgtataatcagtaccatcgataccaggcaatacaaagataactccatcagcaccaacaccaa |
40252563 |
T |
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| Q |
127 |
agttacgatcacagagttgcacagctttcacggaactaatctttggctcagaagagtctctattatcaatctattcataa |
206 |
Q |
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| T |
40252564 |
agttacgatcacatagttgtacagctttctctgaactaatctttggctcagaagagtctctattatcaatctattcataa |
40252643 |
T |
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