View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17065_high_15 (Length: 252)
Name: NF17065_high_15
Description: NF17065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17065_high_15 |
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| [»] chr8 (4 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 214; Significance: 1e-117; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 15 - 252
Target Start/End: Original strand, 8705995 - 8706231
Alignment:
| Q |
15 |
gagaaaaaagctgaaaaggaagctgaagcagatatacatgatgaaggggagccaagtagacacatgagttctgatcatgaaagtcaagaaatttttgaag |
114 |
Q |
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| T |
8705995 |
gagaaaaaagctgaaaaggaagctgaagcagatatacatgatgaaggggagccaagtagacacatgagttctgaccatgaaagtcaagaaatttttgaag |
8706094 |
T |
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| Q |
115 |
gaattcctgatgtaaggagttcatccttggtaaatgatgatagaaattttgagaacaaagttttggatttaaacctttctacatgagacatgctgagaac |
214 |
Q |
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| T |
8706095 |
gaattcctgatgtaaggagttcatccttgataaatgat-atagaaattttgagaacaaagttttggatttaagcctttctacatgaaacatgctgagaac |
8706193 |
T |
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| Q |
215 |
ttatatttgttttataggtgagtgaaactttgccagaa |
252 |
Q |
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| T |
8706194 |
ttatatttgttttataggtgagtgaaactttgccagaa |
8706231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 53 - 194
Target Start/End: Original strand, 8691370 - 8691511
Alignment:
| Q |
53 |
tgatgaaggggagccaagtagacacatgagttctgatcatgaaagtcaagaaatttttgaaggaattcctgatgtaaggagttcatccttggtaaatgat |
152 |
Q |
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| T |
8691370 |
tgatgaaggggagcctagtcgacacatgagttccgatcacgaaaatcaagaaacagttgaaggaattcctgatgtaaggatttcattcttgataaatgac |
8691469 |
T |
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| Q |
153 |
gatagaaattttgagaacaaagttttggatttaaacctttct |
194 |
Q |
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| T |
8691470 |
aatagaaattttgaaaacaaagttttaattttaaacctttct |
8691511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 53 - 228
Target Start/End: Original strand, 8744652 - 8744817
Alignment:
| Q |
53 |
tgatgaaggggagccaagtagacacatgagttctgatcatgaaagtcaagaaatttttgaaggaattcctgatgtaaggagttcatccttggtaaatgat |
152 |
Q |
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| T |
8744652 |
tgatgtaggggagtcaagtagacacatgagctctcactacgaaaatcaagaaacattagaaggaatttcaaatgtaagaagttcatccttg--------- |
8744742 |
T |
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| Q |
153 |
gatagaaattttgagaacaaagttttggatttaaacctttctacatgagacatgctgagaacttatatttgtttta |
228 |
Q |
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| T |
8744743 |
-atagaaattttgaaaacaaagttttggctttacacaatttcacatgaaacatgctaagaacttatacttgtttta |
8744817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 152 - 230
Target Start/End: Original strand, 8724900 - 8724978
Alignment:
| Q |
152 |
tgatagaaattttgagaacaaagttttggatttaaacctttctacatgagacatgctgagaacttatatttgttttata |
230 |
Q |
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| T |
8724900 |
tgatagaaattttcaaagccaagtcttggttttacacctttccacatgaaacatgctgagaacttatacttgttttata |
8724978 |
T |
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