View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17065_high_20 (Length: 239)
Name: NF17065_high_20
Description: NF17065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17065_high_20 |
 | |
|
| [»] chr4 (3 HSPs) |
| |
|
| [»] chr7 (21 HSPs) |
| |
|
| [»] chr2 (10 HSPs) |
| |
|
| [»] chr5 (1 HSPs) |
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|
Alignment Details
Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 21 - 239
Target Start/End: Original strand, 9335445 - 9335663
Alignment:
| Q |
21 |
tactattaatgttatttttgcagatgctaagagattaattggtaggaagtttagtgatccggttgttcaaagagatatattgttgtggccattcaaggtt |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9335445 |
tactattaatgttatttttgcagatgctaagagattaactggtaggaagtttagtgatctggttgttcaaagagatatattgttgtggccattcaaggtt |
9335544 |
T |
|
| Q |
121 |
atttctggtgttaatgacaaacctatgattactgttaagtacaagggtcaagagaagcacttttgtgctgaggaaatatcttctatgttgcttacaaaga |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9335545 |
atttctggtgttaatgacaaacctatgattactgttaactacaagggtcaagagaagcacttttgtgctgaggaaatatcttctatgttgcttacaaaga |
9335644 |
T |
|
| Q |
221 |
tgagagaggttgcggaggc |
239 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
9335645 |
tgagagaggttgcggaggc |
9335663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 35 - 197
Target Start/End: Complemental strand, 30775852 - 30775690
Alignment:
| Q |
35 |
tttttgcagatgctaagagattaattggtaggaagtttagtgatccggttgttcaaagagatatattgttgtggccattcaaggttatttctggtgttaa |
134 |
Q |
| |
|
||||| |||||||||| || |||||||||||||| ||||| || || |||||||||| |||||| ||||||||||||||||||||| ||||||||||||| |
|
|
| T |
30775852 |
ttttttcagatgctaaaaggttaattggtaggaaatttagcgaccctgttgttcaaaaagatattttgttgtggccattcaaggttgtttctggtgttaa |
30775753 |
T |
|
| Q |
135 |
tgacaaacctatgattactgttaagtacaagggtcaagagaagcacttttgtgctgaggaaat |
197 |
Q |
| |
|
||||||||| |||||| | |||||| |||||| || ||||| | | | ||||| |||||||| |
|
|
| T |
30775752 |
tgacaaacccatgatttcccttaagttcaagggccaggagaaactcctctgtgccgaggaaat |
30775690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 32 - 166
Target Start/End: Complemental strand, 35133049 - 35132915
Alignment:
| Q |
32 |
ttatttttgcagatgctaagagattaattggtaggaagtttagtgatccggttgttcaaagagatatattgttgtggccattcaaggttatttctggtgt |
131 |
Q |
| |
|
|||||||| |||||||||| || |||||||||||||||||||||||||| |||||||| |||||| || | |||||||||||||| | | | ||||| |
|
|
| T |
35133049 |
ttattttttcagatgctaaaaggttaattggtaggaagtttagtgatcctattgttcaagatgatatactgctatggccattcaaggtcactgccggtgt |
35132950 |
T |
|
| Q |
132 |
taatgacaaacctatgattactgttaagtacaagg |
166 |
Q |
| |
|
||||||||||| |||||||| ||||||||||||| |
|
|
| T |
35132949 |
aaatgacaaacccatgattacggttaagtacaagg |
35132915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 187; Significance: 1e-101; HSPs: 21)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 33 - 239
Target Start/End: Complemental strand, 8668021 - 8667815
Alignment:
| Q |
33 |
tatttttgcagatgctaagagattaattggtaggaagtttagtgatccggttgttcaaagagatatattgttgtggccattcaaggttatttctggtgtt |
132 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8668021 |
tatttttgcagatgctaagaggttaattggtaggaagtttagtgaccccgttgttcaaagagatatattgttgtggccattcaaggttatttctggtgtt |
8667922 |
T |
|
| Q |
133 |
aatgacaaacctatgattactgttaagtacaagggtcaagagaagcacttttgtgctgaggaaatatcttctatgttgcttacaaagatgagagaggttg |
232 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| |
|
|
| T |
8667921 |
aatgacaaacctatgattactgttaagtacaagggtcaagagaagcacttttgtgctgaggaaatatcttctatggtgcttacaaagatgcgagaggttg |
8667822 |
T |
|
| Q |
233 |
cggaggc |
239 |
Q |
| |
|
||||||| |
|
|
| T |
8667821 |
cggaggc |
8667815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 55 - 239
Target Start/End: Original strand, 8671218 - 8671402
Alignment:
| Q |
55 |
ttaattggtaggaagtttagtgatccggttgttcaaagagatatattgttgtggccattcaaggttatttctggtgttaatgacaaacctatgattactg |
154 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8671218 |
ttaattggtaggaagtttagtgatccggttgttcaaagagatatattgttgtggccattcaaggttatttctggtgttaatgacaaacctatgattactg |
8671317 |
T |
|
| Q |
155 |
ttaagtacaagggtcaagagaagcacttttgtgctgaggaaatatcttctatgttgcttacaaagatgagagaggttgcggaggc |
239 |
Q |
| |
|
| |||||| | |||| ||||||||| ||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| |
|
|
| T |
8671318 |
tcaagtacgaaggtctagagaagcaattttgtgctgaggaaatatcttctatggtgcttacaaagatgcgagaggttgcggaggc |
8671402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 35 - 239
Target Start/End: Original strand, 13333024 - 13333228
Alignment:
| Q |
35 |
tttttgcagatgctaagagattaattggtaggaagtttagtgatccggttgttcaaagagatatattgttgtggccattcaaggttatttctggtgttaa |
134 |
Q |
| |
|
||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| ||||||||| || |
|
|
| T |
13333024 |
ttttttcagatgctaagaggttaattggtaggaagtttagtgatccggttgttcaaaatgatataatgttgtggccattcaaggttacttctggtgtcaa |
13333123 |
T |
|
| Q |
135 |
tgacaaacctatgattactgttaagtacaagggtcaagagaagcacttttgtgctgaggaaatatcttctatgttgcttacaaagatgagagaggttgcg |
234 |
Q |
| |
|
||||| ||||||||||| | ||||| ||||||||||||||||||||||||||| ||||||||||| |||||| | |||||||||||| |||||||||| |
|
|
| T |
13333124 |
cgacaagcctatgattaccgctaagtgcaagggtcaagagaagcacttttgtgccgaggaaatatcatctatggtccttacaaagatgcgagaggttgca |
13333223 |
T |
|
| Q |
235 |
gaggc |
239 |
Q |
| |
|
||||| |
|
|
| T |
13333224 |
gaggc |
13333228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 42 - 239
Target Start/End: Original strand, 10493949 - 10494146
Alignment:
| Q |
42 |
agatgctaagagattaattggtaggaagtttagtgatccggttgttcaaagagatatattgttgtggccattcaaggttatttctggtgttaatgacaaa |
141 |
Q |
| |
|
|||||||||||| |||||||| |||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| ||| ||||| ||||||||| |
|
|
| T |
10493949 |
agatgctaagaggttaattggcaggaagtttagtgatccggttgttcaaaacgatataatgttgtggccattcaaggttacttcaggtgtcaatgacaaa |
10494048 |
T |
|
| Q |
142 |
cctatgattactgttaagtacaagggtcaagagaagcacttttgtgctgaggaaatatcttctatgttgcttacaaagatgagagaggttgcggaggc |
239 |
Q |
| |
|
||||||||||| | ||||||||||||||||||||||||||||||||| ||||||||||| |||||| | |||| ||||||| |||||||||| ||||| |
|
|
| T |
10494049 |
cctatgattaccgctaagtacaagggtcaagagaagcacttttgtgccgaggaaatatcatctatggtccttataaagatgcgagaggttgcagaggc |
10494146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 35 - 206
Target Start/End: Original strand, 8585274 - 8585445
Alignment:
| Q |
35 |
tttttgcagatgctaagagattaattggtaggaagtttagtgatccggttgttcaaagagatatattgttgtggccattcaaggttatttctggtgttaa |
134 |
Q |
| |
|
||||| ||||||| ||||| |||||||||||||||||||||||||| |||||||||| |||||| |||||||||||||||||||||| ||||||||||| |
|
|
| T |
8585274 |
ttttttcagatgccaagaggttaattggtaggaagtttagtgatcccgttgttcaaaatgatataatgttgtggccattcaaggttatctctggtgttaa |
8585373 |
T |
|
| Q |
135 |
tgacaaacctatgattactgttaagtacaagggtcaagagaagcacttttgtgctgaggaaatatcttctat |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||| || | ||||||||||||||||| ||||| |
|
|
| T |
8585374 |
tgacaaacctatgattactgttaagtacaagggtcaagaaaagaacctatgtgctgaggaaatatcatctat |
8585445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 42 - 239
Target Start/End: Complemental strand, 8655043 - 8654846
Alignment:
| Q |
42 |
agatgctaagagattaattggtaggaagtttagtgatccggttgttcaaagagatatattgttgtggccattcaaggttatttctggtgttaatgacaaa |
141 |
Q |
| |
|
|||||||||||| |||||||||||||||| ||||||||| ||||||||| ||||| ||||||||||||||| ||||| ||||||||||||||||||| |
|
|
| T |
8655043 |
agatgctaagaggttaattggtaggaagtatagtgatcctattgttcaaaaggatatcatgttgtggccattcatggttacttctggtgttaatgacaaa |
8654944 |
T |
|
| Q |
142 |
cctatgattactgttaagtacaagggtcaagagaagcacttttgtgctgaggaaatatcttctatgttgcttacaaagatgagagaggttgcggaggc |
239 |
Q |
| |
|
|| |||||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||| | | |||||||||||| ||||| |||| ||||| |
|
|
| T |
8654943 |
cccatgattactgttaagtacaaaggtcaagagaagcaattttgtgctgaggaaatatcatctgcggttcttacaaagatgcgagagattgcagaggc |
8654846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 31 - 206
Target Start/End: Complemental strand, 8629136 - 8628961
Alignment:
| Q |
31 |
gttatttttgcagatgctaagagattaattggtaggaagtttagtgatccggttgttcaaagagatatattgttgtggccattcaaggttatttctggtg |
130 |
Q |
| |
|
||||| ||| ||||||| ||||| |||||||||||||||||||||||||| |||||||||| ||||| |||| |||||||||||||||||||||||| |
|
|
| T |
8629136 |
gttatattttcagatgccaagaggttaattggtaggaagtttagtgatcctgttgttcaaaaggatatcatgttctggccattcaaggttatttctggtc |
8629037 |
T |
|
| Q |
131 |
ttaatgacaaacctatgattactgttaagtacaagggtcaagagaagcacttttgtgctgaggaaatatcttctat |
206 |
Q |
| |
|
|||||||||| ||||||||| |||||||||||||||||||||||||| || | ||||||||||||||||| ||||| |
|
|
| T |
8629036 |
ttaatgacaagcctatgattgctgttaagtacaagggtcaagagaagaacctatgtgctgaggaaatatcatctat |
8628961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 41 - 233
Target Start/End: Complemental strand, 8659957 - 8659765
Alignment:
| Q |
41 |
cagatgctaagagattaattggtaggaagtttagtgatccggttgttcaaagagatatattgttgtggccattcaaggttatttctggtgttaatgacaa |
140 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||| | |||||||||| ||| || |||||||||||||||||||||| ||||||| || ||||| |
|
|
| T |
8659957 |
cagatgcaaagagattaattggtaggaagtttagtgattcagttgttcaaaaagacatgatgttgtggccattcaaggttatcgctggtgtgaacgacaa |
8659858 |
T |
|
| Q |
141 |
acctatgattactgttaagtacaagggtcaagagaagcacttttgtgctgaggaaatatcttctatgttgcttacaaagatgagagaggttgc |
233 |
Q |
| |
|
|| ||||||| |||| ||||||||||||| ||||||||||||||||| ||||||||||| |||||| | |||||||| ||| |||| ||||| |
|
|
| T |
8659857 |
actcatgattaatgttcagtacaagggtcaggagaagcacttttgtgcggaggaaatatcatctatggtacttacaaaaatgcgagaagttgc |
8659765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 35 - 227
Target Start/End: Complemental strand, 1302064 - 1301872
Alignment:
| Q |
35 |
tttttgcagatgctaagagattaattggtaggaagtttagtgatccggttgttcaaagagatatattgttgtggccattcaaggttatttctggtgttaa |
134 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||| | |||||||||| ||| || ||||||||||||||||||| || | ||||| || |
|
|
| T |
1302064 |
ttttttcagatgctaagagattaattggtaggaagtttagtgattcagttgttcaaaaagacatgatgttgtggccattcaaggtcatcgccggtgtgaa |
1301965 |
T |
|
| Q |
135 |
tgacaaacctatgattactgttaagtacaagggtcaagagaagcacttttgtgctgaggaaatatcttctatgttgcttacaaagatgagaga |
227 |
Q |
| |
|
||||||||| ||||| |||||||||||||||||| |||||||||||||| | ||||||||||| |||||| | ||||| |||||| |||| |
|
|
| T |
1301964 |
tgacaaacccgtgattgttgttaagtacaagggtcaggagaagcacttttgcgtggaggaaatatcatctatggtccttacgaagatgcgaga |
1301872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 21 - 222
Target Start/End: Complemental strand, 3147886 - 3147685
Alignment:
| Q |
21 |
tactattaatgttatttttgcagatgctaagagattaattggtaggaagtttagtgatccggttgttcaaagagatatattgttgtggccattcaaggtt |
120 |
Q |
| |
|
|||||||||| ||||||| |||||| ||||| |||||||||||||||||| ||||| | |||||||||| ||||| ||||||||||||||||||| |
|
|
| T |
3147886 |
tactattaattttattttgttagatgcaaagaggttaattggtaggaagtttggtgattctgttgttcaaaatgatatgatgttgtggccattcaaggtc |
3147787 |
T |
|
| Q |
121 |
atttctggtgttaatgacaaacctatgattactgttaagtacaagggtcaagagaagcacttttgtgctgaggaaatatcttctatgttgcttacaaaga |
220 |
Q |
| |
|
|||| || || ||||||||||| |||||| | ||||||| |||||| || ||||||||| | |||||||| ||||| || |||||| | || ||||||| |
|
|
| T |
3147786 |
atttgcggagtgaatgacaaacccatgatttcggttaagtgcaagggacaggagaagcacctatgtgctgaagaaatctcatctatggttctaacaaaga |
3147687 |
T |
|
| Q |
221 |
tg |
222 |
Q |
| |
|
|| |
|
|
| T |
3147686 |
tg |
3147685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 24 - 222
Target Start/End: Complemental strand, 17268552 - 17268352
Alignment:
| Q |
24 |
tattaatgttat-ttttg-cagatgctaagagattaattggtaggaagtttagtgatccggttgttcaaagagatatattgttgtggccattcaaggtta |
121 |
Q |
| |
|
|||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||| || || |||| ||||||| ||| ||||||||||||||| | |
|
|
| T |
17268552 |
tattaatgttatattttgacagatgctaagagactaattggtaggaagtttagtgatcctgtggtccaaaaagatataatgtcgtggccattcaaggtca |
17268453 |
T |
|
| Q |
122 |
tttctggtgttaatgacaaacctatgattactgttaagtacaagggtcaagagaagcacttttgtgctgaggaaatatcttctatgttgcttacaaagat |
221 |
Q |
| |
|
|| | | | | ||||||||||| |||||| | | ||||||||||| | ||||| ||||||||||| |||||||| || |||||| | || |||||||| |
|
|
| T |
17268452 |
ttgcggatatgaatgacaaaccaatgatttccctcaagtacaagggacgggagaaacacttttgtgcagaggaaatttcgtctatggtactcacaaagat |
17268353 |
T |
|
| Q |
222 |
g |
222 |
Q |
| |
|
| |
|
|
| T |
17268352 |
g |
17268352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 24 - 179
Target Start/End: Complemental strand, 6790123 - 6789968
Alignment:
| Q |
24 |
tattaatgttatttttgcagatgctaagagattaattggtaggaagtttagtgatccggttgttcaaagagatatattgttgtggccattcaaggttatt |
123 |
Q |
| |
|
|||||||||||||||| ||||||||||||| |||||||||||||||||||||||| | |||||||||| ||||| |||| |||||||||||||| ||| |
|
|
| T |
6790123 |
tattaatgttattttttcagatgctaagaggttaattggtaggaagtttagtgattctgttgttcaaaatgatatgatgttttggccattcaaggtcatt |
6790024 |
T |
|
| Q |
124 |
tctggtgttaatgacaaacctatgattactgttaagtacaagggtcaagagaagca |
179 |
Q |
| |
|
|||| || |||||||| || |||||| |||| |||| |||||| | |||||||| |
|
|
| T |
6790023 |
gctggcgtcaatgacaagcccatgattgttgttgagtataagggtgaggagaagca |
6789968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 35 - 233
Target Start/End: Complemental strand, 8647474 - 8647279
Alignment:
| Q |
35 |
tttttgcagatgctaagagattaattggtaggaagtttagtgatccggttgttcaaagagatatattgttgtggccattcaaggttatttctggtgttaa |
134 |
Q |
| |
|
||||| ||||||||||||| ||||| |||||||||||| |||| | |||||||| | |||| |||||||||||||||||| ||| || || || |
|
|
| T |
8647474 |
tttttccagatgctaagaggttaatcggtaggaagttttttgattctgttgttcagaatgataagaagttgtggccattcaaggtcatt---ggggtgaa |
8647378 |
T |
|
| Q |
135 |
tgacaaacctatgattactgttaagtacaagggtcaagagaagcacttttgtgctgaggaaatatcttctatgttgcttacaaagatgagagaggttgc |
233 |
Q |
| |
|
||||||||| ||||||| |||||| ||||||||| ||||||||| | |||||||||||||||||| || ||| | || ||||||||| |||||||||| |
|
|
| T |
8647377 |
tgacaaacccatgattattgttaaatacaagggtgaagagaagcgttattgtgctgaggaaatatcatcgatgatcctcacaaagatgcgagaggttgc |
8647279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #14
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 32 - 207
Target Start/End: Complemental strand, 17260844 - 17260669
Alignment:
| Q |
32 |
ttatttttgcagatgctaagagattaattggtaggaagtttagtgatccggttgttcaaagagatatattgttgtggccattcaaggttatttctggtgt |
131 |
Q |
| |
|
||||||| |||||||||||||| || |||||||||||||||||||||| || || |||| ||||||| ||| ||||||||||||||| ||| | | | | |
|
|
| T |
17260844 |
ttattttgacagatgctaagagactagttggtaggaagtttagtgatcctgtggtccaaaaagatataatgtcgtggccattcaaggtcattgcggatat |
17260745 |
T |
|
| Q |
132 |
taatgacaaacctatgattactgttaagtacaagggtcaagagaagcacttttgtgctgaggaaatatcttctatg |
207 |
Q |
| |
|
||||||||||| |||||| | | ||||||||||| | ||||| ||||||||||| |||||||| || |||||| |
|
|
| T |
17260744 |
gaatgacaaaccaatgatttccctcaagtacaagggacgggagaaacacttttgtgcagaggaaatctcgtctatg |
17260669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #15
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 42 - 239
Target Start/End: Original strand, 27830450 - 27830647
Alignment:
| Q |
42 |
agatgctaagagattaattggtaggaagtttagtgatccggttgttcaaagagatatattgttgtggccattcaaggttatttctggtgttaatgacaaa |
141 |
Q |
| |
|
|||||||||||| ||||||||||||||||| || ||| |||||||||| ||||||| ||||||| |||||| || ||| ||| ||| || ||||| |
|
|
| T |
27830450 |
agatgctaagaggttaattggtaggaagttcagcgatgatgttgttcaaaaagatataaacttgtggctattcaaagtcattactgatgtaaacaacaaa |
27830549 |
T |
|
| Q |
142 |
cctatgattactgttaagtacaagggtcaagagaagcacttttgtgctgaggaaatatcttctatgttgcttacaaagatgagagaggttgcggaggc |
239 |
Q |
| |
|
|| ||| || ||||||||||||| |||| ||||| ||||| ||||| |||||||| || || ||| | |||||||||||| ||||| | |||||||| |
|
|
| T |
27830550 |
cccatgtttgttgttaagtacaagagtcaggagaaacacttatgtgcggaggaaatttcatcaatggtccttacaaagatgcgagagatcgcggaggc |
27830647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #16
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 102 - 233
Target Start/End: Original strand, 8640184 - 8640312
Alignment:
| Q |
102 |
gttgtggccattcaaggttatttctggtgttaatgacaaacctatgattactgttaagtacaagggtcaagagaagcacttttgtgctgaggaaatatct |
201 |
Q |
| |
|
|||||||||||||||||| ||| || || ||||||||||| | ||||| |||||| ||||||||| ||||||||| |||||||| ||||||||||| |
|
|
| T |
8640184 |
gttgtggccattcaaggtcatt---ggggtgaatgacaaacccacgattattgttaaatacaagggtgaagagaagcgtttttgtgccgaggaaatatca |
8640280 |
T |
|
| Q |
202 |
tctatgttgcttacaaagatgagagaggttgc |
233 |
Q |
| |
|
|||||| | ||| | |||||| |||||||||| |
|
|
| T |
8640281 |
tctatgatcctttcgaagatgcgagaggttgc |
8640312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #17
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 35 - 200
Target Start/End: Complemental strand, 8546232 - 8546067
Alignment:
| Q |
35 |
tttttgcagatgctaagagattaattggtaggaagtttagtgatccggttgttcaaagagatatattgttgtggccattcaaggttatttctggtgttaa |
134 |
Q |
| |
|
||||||||||||| ||||| |||||||| ||||| | ||||||| | ||||||| | ||| || |||||||||| || ||||| ||||| |||||||| |
|
|
| T |
8546232 |
tttttgcagatgcaaagaggttaattggaaggaaatatagtgattcctttgttcagaatgatctactgttgtggccctttaaggtcatttccggtgttaa |
8546133 |
T |
|
| Q |
135 |
tgacaaacctatgattactgttaagtacaagggtcaagagaagcacttttgtgctgaggaaatatc |
200 |
Q |
| |
|
||||||||| | ||| ||| || ||||||||| | || ||||||||| |||||| |||||||| |
|
|
| T |
8546132 |
tgacaaaccgacaattcttgtgaactacaagggtgaggaaaagcactttgttgctgaagaaatatc |
8546067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 38 - 222
Target Start/End: Original strand, 7877304 - 7877488
Alignment:
| Q |
38 |
ttgcagatgctaagagattaattggtaggaagtttagtgatccggttgttcaaagagatatattgttgtggccattcaaggttatttctggtgttaatga |
137 |
Q |
| |
|
|||||||||| ||||| || ||||| ||||| | ||| ||| | ||| |||| | ||||| ||||||||||||| |||||| || ||||| | |||| |
|
|
| T |
7877304 |
ttgcagatgcaaagaggttgattggaaggaaatatagcgattctgttattcagaatgatattctgttgtggccatttaaggttgttgctggttctgatga |
7877403 |
T |
|
| Q |
138 |
caaacctatgattactgttaagtacaagggtcaagagaagcacttttgtgctgaggaaatatcttctatgttgcttacaaagatg |
222 |
Q |
| |
|
||| ||| || | ||||||||| ||||| | || |||||||||||||| ||||||||||| || ||| | |||||||||||| |
|
|
| T |
7877404 |
caagcctgatatcattgttaagtataagggcgaggaaaagcacttttgtgccgaggaaatatcatccatgatccttacaaagatg |
7877488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 32 - 207
Target Start/End: Original strand, 29577234 - 29577409
Alignment:
| Q |
32 |
ttatttttgcagatgctaagagattaattggtaggaagtttagtgatccggttgttcaaagagatatattgttgtggccattcaaggttatttctggtgt |
131 |
Q |
| |
|
|||||| ||||||||| ||||| |||||||| ||||| || |||||| | || ||| | ||||||| ||||||||| || ||||| ||| |||| | |
|
|
| T |
29577234 |
ttatttatgcagatgcgaagaggttaattggaaggaaattcagtgattccattattcggaaagatataaagttgtggccctttaaggtcattcctggagc |
29577333 |
T |
|
| Q |
132 |
taatgacaaacctatgattactgttaagtacaagggtcaagagaagcacttttgtgctgaggaaatatcttctatg |
207 |
Q |
| |
|
| ||||||| || | ||| ||||||||||||||| |||||||| |||| ||||||||||||||| |||||| |
|
|
| T |
29577334 |
tgatgacaatcccaagatccttgttaagtacaagggcaaagagaagtgctttgttgctgaggaaatatcgtctatg |
29577409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 41 - 222
Target Start/End: Complemental strand, 8602568 - 8602387
Alignment:
| Q |
41 |
cagatgctaagagattaattggtaggaagtttagtgatccggttgttcaaagagatatattgttgtggccattcaaggttatttctggtgttaatgacaa |
140 |
Q |
| |
|
||||||| ||||| |||||||| ||||| | ||||||| | || |||| | || ||| |||||||||||| |||||| || |||| | ||||||| |
|
|
| T |
8602568 |
cagatgcaaagaggttaattggaaggaaatatagtgattctgtcattcagaatgacatacggttgtggccatttaaggttgttcctggcaatgatgacaa |
8602469 |
T |
|
| Q |
141 |
acctatgattactgttaagtacaagggtcaagagaagcacttttgtgctgaggaaatatcttctatgttgcttacaaagatg |
222 |
Q |
| |
|
|||| ||| | ||||||||| |||||| || |||||||| |||||||||||||| || || ||| | |||||||||||| |
|
|
| T |
8602468 |
acctgagatcattgttaagtataagggtggggaaaagcacttctgtgctgaggaaatctcatcaatggtccttacaaagatg |
8602387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 104 - 239
Target Start/End: Original strand, 8635980 - 8636115
Alignment:
| Q |
104 |
tgtggccattcaaggttatttctggtgttaatgacaaacctatgattactgttaagtacaagggtcaagagaagcacttttgtgctgaggaaatatcttc |
203 |
Q |
| |
|
||||||| || ||||| ||| ||||| | |||||||||| |||||| ||| || ||||||||| || | ||||| ||| | ||||||||||||| || |
|
|
| T |
8635980 |
tgtggccctttaaggtaattgctggtcgtgatgacaaacccatgattgttgtgaaatacaagggtgaacaaaagcaactttttcctgaggaaatatcgtc |
8636079 |
T |
|
| Q |
204 |
tatgttgcttacaaagatgagagaggttgcggaggc |
239 |
Q |
| |
|
|||| | || ||||||||| ||||| |||| ||||| |
|
|
| T |
8636080 |
tatggtcctgacaaagatgcgagagattgctgaggc |
8636115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 103; Significance: 2e-51; HSPs: 10)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 41 - 239
Target Start/End: Original strand, 16661566 - 16661764
Alignment:
| Q |
41 |
cagatgctaagagattaattggtaggaagtttagtgatccggttgttcaaagagatatattgttgtggccattcaaggttatttctggtgttaatgacaa |
140 |
Q |
| |
|
||||||||||||| |||||||||||||| |||||||| || |||||||||| ||||||| |||||||||| |||||||||||| |||||||||||||||| |
|
|
| T |
16661566 |
cagatgctaagaggttaattggtaggaaatttagtgaccccgttgttcaaaaagatatactgttgtggccgttcaaggttattgctggtgttaatgacaa |
16661665 |
T |
|
| Q |
141 |
acctatgattactgttaagtacaagggtcaagagaagcacttttgtgctgaggaaatatcttctatgttgcttacaaagatgagagaggttgcggaggc |
239 |
Q |
| |
|
||||| ||||| |||||||||||||||||| ||||||| | ||||||| |||||||| || ||||| | || ||||| |||| |||||||| ||||| |
|
|
| T |
16661666 |
acctacgattagtgttaagtacaagggtcaggagaagctcctttgtgccgaggaaatctcatctattgtcctcacaaacatgaaggaggttgcagaggc |
16661764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 30 - 239
Target Start/End: Original strand, 16657080 - 16657289
Alignment:
| Q |
30 |
tgttatttttgcagatgctaagagattaattggtaggaagtttagtgatccggttgttcaaagagatatattgttgtggccattcaaggttatttctggt |
129 |
Q |
| |
|
|||| ||||| |||||||||| || ||||| |||||||||||||||||||| |||||||||| ||||| | ||||||||||||||||| ||| | || |
|
|
| T |
16657080 |
tgttgttttttcagatgctaaaaggttaatcggtaggaagtttagtgatcctgttgttcaaaatgatatcatcttgtggccattcaaggtcattgccgga |
16657179 |
T |
|
| Q |
130 |
gttaatgacaaacctatgattactgttaagtacaagggtcaagagaagcacttttgtgctgaggaaatatcttctatgttgcttacaaagatgagagagg |
229 |
Q |
| |
|
|| ||||||||||| ||||||||| || |||| ||||||||||||| || |||||||||||||||||||| |||||| | |||||||||||| |||| | |
|
|
| T |
16657180 |
gtgaatgacaaaccaatgattactcttcagtataagggtcaagagagccaattttgtgctgaggaaatatcatctatgatccttacaaagatgcgagaag |
16657279 |
T |
|
| Q |
230 |
ttgcggaggc |
239 |
Q |
| |
|
|||| ||||| |
|
|
| T |
16657280 |
ttgctgaggc |
16657289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 35 - 233
Target Start/End: Complemental strand, 43626010 - 43625815
Alignment:
| Q |
35 |
tttttgcagatgctaagagattaattggtaggaagtttagtgatccggttgttcaaagagatatattgttgtggccattcaaggttatttctggtgttaa |
134 |
Q |
| |
|
||||| ||||||||||||| ||||| |||||||||||||||||| | |||||||||| ||||| ||||||||||||||| ||| ||| || || | |
|
|
| T |
43626010 |
tttttccagatgctaagaggttaatcggtaggaagtttagtgattctgttgttcaaaatgatatcatgttgtggccattcagggtcatt---ggggtgga |
43625914 |
T |
|
| Q |
135 |
tgacaaacctatgattactgttaagtacaagggtcaagagaagcacttttgtgctgaggaaatatcttctatgttgcttacaaagatgagagaggttgc |
233 |
Q |
| |
|
||||||||| ||||||| ||| || ||||||||||||||||||| |||||| ||||||||||||| |||||| | || ||||||||| |||||||||| |
|
|
| T |
43625913 |
tgacaaaccaatgattattgtaaaatacaagggtcaagagaagcgtttttgtcctgaggaaatatcgtctatgatcctcacaaagatgcgagaggttgc |
43625815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 27 - 179
Target Start/End: Complemental strand, 12235297 - 12235145
Alignment:
| Q |
27 |
taatgttatttttgcagatgctaagagattaattggtaggaagtttagtgatccggttgttcaaagagatatattgttgtggccattcaaggttatttct |
126 |
Q |
| |
|
|||||||| |||| ||||||||||||| ||||||||||||||||||||||||| ||||||||| ||| | ||||||||||||||||||| | || |
|
|
| T |
12235297 |
taatgttaatttttcagatgctaagaggttaattggtaggaagtttagtgatcaagttgttcaagatgatgtgatgttgtggccattcaaggtcgctgct |
12235198 |
T |
|
| Q |
127 |
ggtgttaatgacaaacctatgattactgttaagtacaagggtcaagagaagca |
179 |
Q |
| |
|
||||| ||||||||||| ||||||| ||| ||||||||||||| ||||||||| |
|
|
| T |
12235197 |
ggtgtcaatgacaaacccatgattattgtcaagtacaagggtcgagagaagca |
12235145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 27 - 176
Target Start/End: Complemental strand, 7542834 - 7542685
Alignment:
| Q |
27 |
taatgttatttttgcagatgctaagagattaattggtaggaagtttagtgatccggttgttcaaagagatatattgttgtggccattcaaggttatttct |
126 |
Q |
| |
|
|||||| ||||||| |||||||||||| |||||||||||||||||||||||||| ||||||||| |||||| |||| |||||||||||||| | | | |
|
|
| T |
7542834 |
taatgtaatttttgtagatgctaagaggttaattggtaggaagtttagtgatcctgttgttcaagatgatatactgttatggccattcaaggtgactgcg |
7542735 |
T |
|
| Q |
127 |
ggtgttaatgacaaacctatgattactgttaagtacaagggtcaagagaa |
176 |
Q |
| |
|
|||| ||||||| ||| |||||||| ||||||||||||| ||| ||||| |
|
|
| T |
7542734 |
ggtgacaatgacagacccatgattaccgttaagtacaaggatcaggagaa |
7542685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 35 - 207
Target Start/End: Complemental strand, 11999994 - 11999822
Alignment:
| Q |
35 |
tttttgcagatgctaagagattaattggtaggaagtttagtgatccggttgttcaaagagatatattgttgtggccattcaaggttatttctggtgttaa |
134 |
Q |
| |
|
||||| ||||||||||||| ||||||||| ||||||||||||||| ||||||||| ||| |||||| |||||||||||||| | | ||| ||| || |
|
|
| T |
11999994 |
ttttttcagatgctaagaggttaattggttggaagtttagtgatcttgttgttcaagatgatggattgttatggccattcaaggtcactgctgatgtcaa |
11999895 |
T |
|
| Q |
135 |
tgacaaacctatgattactgttaagtacaagggtcaagagaagcacttttgtgctgaggaaatatcttctatg |
207 |
Q |
| |
|
||||||||| || ||||||||||||||||| || || |||||||| | |||||||| ||| |||| |||||| |
|
|
| T |
11999894 |
tgacaaaccaataattactgttaagtacaaaggccaggagaagcagctatgtgctgaagaagtatcatctatg |
11999822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 28 - 200
Target Start/End: Original strand, 12258142 - 12258314
Alignment:
| Q |
28 |
aatgttatttttgcagatgctaagagattaattggtaggaagtttagtgatccggttgttcaaagagatatattgttgtggccattcaaggttatttctg |
127 |
Q |
| |
|
||||||| ||| ||||||||||||| ||||||||||||||||||||||||| || |||||| |||||| ||||||||||||| || || | | ||| |
|
|
| T |
12258142 |
aatgttaaatttccagatgctaagaggttaattggtaggaagtttagtgatcaagtagttcaagatgatataatgttgtggccatttaaagtcactgctg |
12258241 |
T |
|
| Q |
128 |
gtgttaatgacaaacctatgattactgttaagtacaagggtcaagagaagcacttttgtgctgaggaaatatc |
200 |
Q |
| |
|
|||| |||| |||||| |||||||| || ||||||||| |||||||||||| ||||||| |||||| |||| |
|
|
| T |
12258242 |
gtgtcaatggcaaacccatgattacggtaaagtacaagaatcaagagaagcagctttgtgccgaggaagtatc |
12258314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 35 - 227
Target Start/End: Original strand, 12244974 - 12245166
Alignment:
| Q |
35 |
tttttgcagatgctaagagattaattggtaggaagtttagtgatccggttgttcaaagagatatattgttgtggccattcaaggttatttctggtgttaa |
134 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||| |||||| ||| ||| || ||||| |||||||| | | ||||||| || |
|
|
| T |
12244974 |
ttttttcagatgctaagagattaattggtaggaagtttagtgatcctattgttctggatgatgcattattatggccgttcaaggtcactgctggtgtcaa |
12245073 |
T |
|
| Q |
135 |
tgacaaacctatgattactgttaagtacaagggtcaagagaagcacttttgtgctgaggaaatatcttctatgttgcttacaaagatgagaga |
227 |
Q |
| |
|
||||||||| || ||||||||||| ||||| || || |||||||| | |||||||| ||| |||| |||||| | || ||||||||| |||| |
|
|
| T |
12245074 |
tgacaaaccaataattactgttaactacaaaggccaggagaagcagctatgtgctgaagaagtatcatctatggtactaacaaagatgcgaga |
12245166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 36 - 177
Target Start/End: Complemental strand, 14704007 - 14703866
Alignment:
| Q |
36 |
ttttgcagatgctaagagattaattggtaggaagtttagtgatccggttgttcaaagagatatattgttgtggccattcaaggttatttctggtgttaat |
135 |
Q |
| |
|
|||| ||||||||||||| || | || ||||||||||| ||||| |||||||| |||||| | || |||||||| ||||| | | |||| || || |
|
|
| T |
14704007 |
tttttcagatgctaagaggttgttgggaaggaagtttagcgatcctattgttcaagatgatatacttttatggccatttaaggtcactgctggagtcgat |
14703908 |
T |
|
| Q |
136 |
gacaaacctatgattactgttaagtacaagggtcaagagaag |
177 |
Q |
| |
|
|||||||| |||||||| ||||||||||||| ||| |||||| |
|
|
| T |
14703907 |
gacaaacccatgattacggttaagtacaaggatcaggagaag |
14703866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 35 - 78
Target Start/End: Complemental strand, 39373460 - 39373417
Alignment:
| Q |
35 |
tttttgcagatgctaagagattaattggtaggaagtttagtgat |
78 |
Q |
| |
|
||||| ||||||||||||| ||||||||||||||||||| |||| |
|
|
| T |
39373460 |
ttttttcagatgctaagaggttaattggtaggaagtttaatgat |
39373417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 95; Significance: 1e-46; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 30 - 233
Target Start/End: Complemental strand, 15595642 - 15595441
Alignment:
| Q |
30 |
tgttatttttgcagatgctaagagattaattggtaggaagtttagtgatccggtt-gttcaaagagatatattgttgtggccattcaaggttatttctgg |
128 |
Q |
| |
|
|||||||||| ||||||||||||||||||| ||||||||||||||||| | ||| ||||||| |||||| |||||||||||||||||| ||| || |
|
|
| T |
15595642 |
tgttattttttcagatgctaagagattaatcagtaggaagtttagtgattctgtttgttcaaaatgatataaagttgtggccattcaaggtcatt---gg |
15595546 |
T |
|
| Q |
129 |
tgttaatgacaaacctatgattactgttaagtacaagggtcaagagaagcacttttgtgctgaggaaatatcttctatgttgcttacaaagatgagagag |
228 |
Q |
| |
|
||| ||||||||||| ||||||| |||||| |||||||||||||| |||| ||||||||||||||||||||| |||||| | || | ||||||| ||||| |
|
|
| T |
15595545 |
tgtgaatgacaaacccatgattattgttaaatacaagggtcaagaaaagcgcttttgtgctgaggaaatatcgtctatgattctcaaaaagatgcgagag |
15595446 |
T |
|
| Q |
229 |
gttgc |
233 |
Q |
| |
|
||||| |
|
|
| T |
15595445 |
gttgc |
15595441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 35 - 233
Target Start/End: Original strand, 4678126 - 4678324
Alignment:
| Q |
35 |
tttttgcagatgctaagagattaattggtaggaagtttagtgatccggttgttcaaagagatatattgttgtggccattcaaggttatttctggtgttaa |
134 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| || ||||||| | |||||||||| ||| || ||||||||||||| | ||| || |||||| || |
|
|
| T |
4678126 |
tttttgcagatgctaagaggttaattggtaggaggtatagtgattctgttgttcaaaaagacatcatgttgtggccatttagggtcatcactggtgagaa |
4678225 |
T |
|
| Q |
135 |
tgacaaacctatgattactgttaagtacaagggtcaagagaagcacttttgtgctgaggaaatatcttctatgttgcttacaaagatgagagaggttgc |
233 |
Q |
| |
|
||| ||||| ||||||| ||||||||||||||||||||||||||| || ||| |||||||||||| || ||| | ||||||||||||||||| ||||| |
|
|
| T |
4678226 |
tgataaaccgatgattagtgttaagtacaagggtcaagagaagcaagttagtgttgaggaaatatcatcgatgatccttacaaagatgagagaagttgc |
4678324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 36 - 222
Target Start/End: Original strand, 34466362 - 34466548
Alignment:
| Q |
36 |
ttttgcagatgctaagagattaattggtaggaagtttagtgatccggttgttcaaagagatatattgttgtggccattcaaggttatttctggtgttaat |
135 |
Q |
| |
|
|||| ||||||||||||| |||||||| || || ||||||||||| | |||||||| |||||| |||| ||||||||||| |||||| ||||||||||| |
|
|
| T |
34466362 |
tttttcagatgctaagaggttaattggcagaaaatttagtgatcctgatgttcaaacagatatgatgttatggccattcaaagttattgctggtgttaat |
34466461 |
T |
|
| Q |
136 |
gacaaacctatgattactgttaagtacaagggtcaagagaagcacttttgtgctgaggaaatatcttctatgttgcttacaaagatg |
222 |
Q |
| |
|
||||| || |||||| | ||||||| |||||||| ||||||||| | |||||||||||||| || |||||| | ||| |||||||| |
|
|
| T |
34466462 |
gacaagccaatgatttcccttaagtataagggtcaggagaagcacctatgtgctgaggaaatctcatctatgatcctttcaaagatg |
34466548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 45 - 119
Target Start/End: Original strand, 52549098 - 52549172
Alignment:
| Q |
45 |
tgctaagagattaattggtaggaagtttagtgatccggttgttcaaagagatatattgttgtggccattcaaggt |
119 |
Q |
| |
|
||||||||| |||||||||| ||||||||||||||| ||||||||| ||||||||||| ||| |||||||||| |
|
|
| T |
52549098 |
tgctaagaggttaattggtaagaagtttagtgatcctgttgttcaagatgatatattgttatggtcattcaaggt |
52549172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 35 - 239
Target Start/End: Complemental strand, 28220551 - 28220347
Alignment:
| Q |
35 |
tttttgcagatgctaagagattaattggtaggaagtttagtgatccggttgttcaaagagatatattgttgtggccattcaaggttatttctggtgttaa |
134 |
Q |
| |
|
||||| ||||||||||||| ||||||||||||||||||||||| | ||||||||| |||||| |||||||||||||||||| ||||| || || |
|
|
| T |
28220551 |
ttttttcagatgctaagaggttaattggtaggaagtttagtgactctgttgttcaagatgatataaagttgtggccattcaaggtcatttccggaacgaa |
28220452 |
T |
|
| Q |
135 |
tgacaaacctatgattactgttaagtacaagggtcaagagaagcacttttgtgctgaggaaatatcttctatgttgcttacaaagatgagagaggttgcg |
234 |
Q |
| |
|
|||||||| |||||| |||||||||||||||| || ||||||||| | ||||| || ||||| || |||||| | || ||||||||| | ||| |||| |
|
|
| T |
28220451 |
cgacaaacccatgatttctgttaagtacaagggacaggagaagcacctatgtgccgaagaaatctcatctatggttctaacaaagatgcgtgagattgca |
28220352 |
T |
|
| Q |
235 |
gaggc |
239 |
Q |
| |
|
||||| |
|
|
| T |
28220351 |
gaggc |
28220347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 41 - 222
Target Start/End: Complemental strand, 43745441 - 43745260
Alignment:
| Q |
41 |
cagatgctaagagattaattggtaggaagtttagtgatccggttgttcaaagagatatattgttgtggccattcaaggttatttctggtgttaatgacaa |
140 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| |||| | | |||||||| ||||| ||||||||| |||||||| ||||| || | |||||||| |
|
|
| T |
43745441 |
cagatgctaagaggttaattggtaggaagtttaatgattctgatgttcaaaatgatatgaagttgtggccgttcaaggtcatttccggattgaatgacaa |
43745342 |
T |
|
| Q |
141 |
acctatgattactgttaagtacaagggtcaagagaagcacttttgtgctgaggaaatatcttctatgttgcttacaaagatg |
222 |
Q |
| |
|
||| ||||| |||||||||||||||| || ||||||||| | ||||| || ||||| || |||||| | || ||||||||| |
|
|
| T |
43745341 |
acccgtgatttctgttaagtacaagggacaggagaagcacctatgtgccgaagaaatctcatctatgattctaacaaagatg |
43745260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 32 - 197
Target Start/End: Complemental strand, 28911185 - 28911020
Alignment:
| Q |
32 |
ttatttttgcagatgctaagagattaattggtaggaagtttagtgatccggttgttcaaagagatatattgttgtggccattcaaggttatttctggtgt |
131 |
Q |
| |
|
||||||| ||||||||||||| |||||| |||||||||||||||||| |||||||||| ||| | |||||| ||| |||||||| ||| | ||||| |
|
|
| T |
28911185 |
ttattttgacagatgctaagaggataattgataggaagtttagtgatcccgttgttcaaaacgattcaatgttgtcgccgttcaaggtcattgccggtgt |
28911086 |
T |
|
| Q |
132 |
taatgacaaacctatgattactgttaagtacaagggtcaagagaagcacttttgtgctgaggaaat |
197 |
Q |
| |
|
|||||||| || ||||| |||| |||||||||| ||| |||||| | || |||||||||||||| |
|
|
| T |
28911085 |
caatgacaaccccatgatatctgtcaagtacaaggatcaggagaagaaattatgtgctgaggaaat |
28911020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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