View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17065_low_1 (Length: 912)
Name: NF17065_low_1
Description: NF17065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17065_low_1 |
 | |
|
| [»] chr5 (7 HSPs) |
| |
|
| [»] chr6 (2 HSPs) |
| |
|
| [»] scaffold0912 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 529; Significance: 0; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 529; E-Value: 0
Query Start/End: Original strand, 316 - 912
Target Start/End: Complemental strand, 32782388 - 32781792
Alignment:
| Q |
316 |
aaattccattgtctttagatctcttcaatgtcgctaatgtatatacacgggtctattttagctatttgagataattagtggtgtatctaaatagatagac |
415 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32782388 |
aaattccattgtctttagatctcttcaatgtcgctaatgtatatacacgggtctattttagctatttgagataattagtggtgtatctaaatagatagat |
32782289 |
T |
|
| Q |
416 |
ctgactacaatctcgaatgttgattgtagtatatgctcttttgatgctttgataaatattttaaaaaggtgcacatttataatgtttgtgtagtatgctt |
515 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
32782288 |
ctgactactatctcgaatgttgattgtagtatatgctcttttgatattttgataaatattttaaaaaggtgcacatttataatgtttgtgtagtatactt |
32782189 |
T |
|
| Q |
516 |
acttcataagttaaatgcacaagactcagttgctatctttccaacatttctgctaccatacatttctgctatcatacataagctaactacattcagaata |
615 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32782188 |
acttcataagttaaatgcacatgactcagttgctatctttccaacatttctgctaccatacatttctgctatcatacataagctaactacattcagaata |
32782089 |
T |
|
| Q |
616 |
taaaataaacaaacaattcatacatttcgaagagatagtgtgttatgaaggtagataacacttatattcacttatctgatcaatgtagcaaattatcttt |
715 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
32782088 |
taaaataaacaaacaattcatacatttcaaagagatagtgtgttatgaaggtagctaacacttatcttcacttatctgatcaatgtagcaaattatcttt |
32781989 |
T |
|
| Q |
716 |
aatctttcaagaacatcataagagaataaagtatcatatgtagatttaatagtgcagaatgttgcaatcctgataaaaataaaagcactaaatctcaaac |
815 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||||||| |
|
|
| T |
32781988 |
aatctttcaagaacatcataagagaataaagcatcatatgtagatttaatagtgctgaatgttgcaatccagataaaaaataaagcactaaatctcaaac |
32781889 |
T |
|
| Q |
816 |
tatttaatatcattgcaaaatatcaagattttttggcacatcaagtgacagagcaaacttattttatccagaatattgtgctaccaattgtaaccat |
912 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| |
|
|
| T |
32781888 |
tatctaatatcattgcaaaatatcaagattttttggcacatcaagtgacagagcaaacttattttatccagaatcttgtgctaccaactgtaaccat |
32781792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 220 - 519
Target Start/End: Original strand, 13353346 - 13353645
Alignment:
| Q |
220 |
aacaaaattgtgtactgcatcttcaaatactattcaaagggaaggaagtctttgtagcaattattttttaaggggttgctgattttttactctgtaaaat |
319 |
Q |
| |
|
||||||||||||| |||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| |
|
|
| T |
13353346 |
aacaaaattgtgtgatgcaacttcaaatactattcaaaaggaaggaagtctttgtagcaattattttttaaggggtgactgattttttactctttaaaat |
13353445 |
T |
|
| Q |
320 |
tccattgtctttagatctcttcaatgtcgctaatgtatatacacgggtctattttagctatttgagataattagtggtgtatctaaatagatagacctga |
419 |
Q |
| |
|
|| ||||||||||||||| ||| ||||||||||||||| | |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13353446 |
tcgattgtctttagatctattcgatgtcgctaatgtattttcacgggtcgattttagctatttgagataattagtggtgtatctaaatagatagacctga |
13353545 |
T |
|
| Q |
420 |
ctacaatctcgaatgttgattgtagtatatgctcttttgatgctttgataaatattttaaaaaggtgcacatttataatgtttgtgtagtatgcttactt |
519 |
Q |
| |
|
|||| ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| |||||| |
|
|
| T |
13353546 |
ctactatctcgaatattgatcgtagtatatgctcttttgatgctttgataaatattttaaaaaggtgcacatttctaatgtttgtgtaatatgtttactt |
13353645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 157; E-Value: 5e-83
Query Start/End: Original strand, 323 - 519
Target Start/End: Original strand, 43355996 - 43356192
Alignment:
| Q |
323 |
attgtctttagatctcttcaatgtcgctaatgtatatacacgggtctattttagctatttgagataattagtggtgtatctaaatagatagacctgacta |
422 |
Q |
| |
|
||||| ||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43355996 |
attgtatttagatatcttcaatgtcgctaatgtatatacacgggtctattttaactatttgagataattagtggtgtatctaaatagatagacctgacta |
43356095 |
T |
|
| Q |
423 |
caatctcgaatgttgattgtagtatatgctcttttgatgctttgataaatattttaaaaaggtgcacatttataatgtttgtgtagtatgcttactt |
519 |
Q |
| |
|
| ||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| ||||| ||||||||||| |
|
|
| T |
43356096 |
ctgtctcgaatgttgattatagtatatgctcttttgatgctttgaaaaatattttaaaaaggtgcacatttctaatgttcgtgtaatatgcttactt |
43356192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 128; E-Value: 1e-65
Query Start/End: Original strand, 54 - 221
Target Start/End: Original strand, 13352652 - 13352819
Alignment:
| Q |
54 |
taggattaggagcattgccacttctcctgtataagttgtttttgatggctcttctacataacctaacgagcgaataactttgcttgcctgcaatgtgaat |
153 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |||||||||||||||||||||||||| | ||| |
|
|
| T |
13352652 |
taggattaggatcattgccacttctcctgtataagttgtttttgatggctctcctacataacataaccagcgaataactttgcttgcctgcaatctaaat |
13352751 |
T |
|
| Q |
154 |
gtatctttttctattttctattaacagaagtctcttatcttctgaatcttctagctttgcttataaaa |
221 |
Q |
| |
|
|||||||||||||||||||||||||| || | |||| ||||||||||||||||||||||||||||||| |
|
|
| T |
13352752 |
gtatctttttctattttctattaacataattgtcttgtcttctgaatcttctagctttgcttataaaa |
13352819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 112; E-Value: 4e-56
Query Start/End: Original strand, 54 - 221
Target Start/End: Original strand, 39394661 - 39394828
Alignment:
| Q |
54 |
taggattaggagcattgccacttctcctgtataagttgtttttgatggctcttctacataacctaacgagcgaataactttgcttgcctgcaatgtgaat |
153 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| | |||||||| ||||| ||||||||| |||| |||||||||||||||||| ||||||| ||||| |
|
|
| T |
39394661 |
taggattaggatcattgccacttctcctgtataagctatttttgattgctctcctacataacataaccagcgaataactttgcttgtctgcaatctgaat |
39394760 |
T |
|
| Q |
154 |
gtatctttttctattttctattaacagaagtctcttatcttctgaatcttctagctttgcttataaaa |
221 |
Q |
| |
|
||||| |||||||||||||||||||| |||| |||| ||||||||||||||||||||| ||||||||| |
|
|
| T |
39394761 |
gtatccttttctattttctattaacataagtgtcttgtcttctgaatcttctagctttacttataaaa |
39394828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 219 - 305
Target Start/End: Original strand, 8350129 - 8350214
Alignment:
| Q |
219 |
aaacaaaattgtgtactgcatcttcaaatactattcaaagggaaggaagtctttgtagcaattattttttaaggggttgctgatttt |
305 |
Q |
| |
|
|||||||||||| ||| |||||||||||||||||| ||| |||| |||||||||||||||| |||||| |||| ||| ||||||||| |
|
|
| T |
8350129 |
aaacaaaattgtataccgcatcttcaaatactatttaaaaggaaagaagtctttgtagcaa-tattttataagcggtggctgatttt |
8350214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 219 - 305
Target Start/End: Complemental strand, 42819492 - 42819407
Alignment:
| Q |
219 |
aaacaaaattgtgtactgcatcttcaaatactattcaaagggaaggaagtctttgtagcaattattttttaaggggttgctgatttt |
305 |
Q |
| |
|
|||||||||||| ||| |||||||||||||| ||||||| |||| |||||||||||||||||| |||| |||| ||| ||||||||| |
|
|
| T |
42819492 |
aaacaaaattgtataccgcatcttcaaatacaattcaaaaggaaagaagtctttgtagcaatt-ttttataagcggtggctgatttt |
42819407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 220; Significance: 1e-120; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 220; E-Value: 1e-120
Query Start/End: Original strand, 216 - 519
Target Start/End: Original strand, 15595026 - 15595329
Alignment:
| Q |
216 |
ataaaacaaaattgtgtactgcatcttcaaatactattcaaagggaaggaagtctttgtagcaattattttttaaggggttgctgattttttactctgta |
315 |
Q |
| |
|
|||||| ||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | ||||| |||||||| |||| |
|
|
| T |
15595026 |
ataaaataaaattgtgtactacatcttcaaatactattcaaaaggaaggaagtctttgtagcaattattttttaagggatggctgaatttttactatgta |
15595125 |
T |
|
| Q |
316 |
aaattccattgtctttagatctcttcaatgtcgctaatgtatatacacgggtctattttagctatttgagataattagtggtgtatctaaatagatagac |
415 |
Q |
| |
|
|||||| || || |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15595126 |
aaattcgatggtgtttagatctcatcaatgtcgctaatgtatatacacgggtctattttagctatttgagataattagtggtgtatctaaatagatagac |
15595225 |
T |
|
| Q |
416 |
ctgactacaatctcgaatgttgattgtagtatatgctcttttgatgctttgataaatattttaaaaaggtgcacatttataatgtttgtgtagtatgctt |
515 |
Q |
| |
|
|||||||| ||||||||| ||||||| |||||||||| ||||||||||||||||||||||||||||| |||||||||| |||| |||| ||| |||| || |
|
|
| T |
15595226 |
ctgactactatctcgaatattgattgcagtatatgctattttgatgctttgataaatattttaaaaaagtgcacatttctaatttttgggtaatatgttt |
15595325 |
T |
|
| Q |
516 |
actt |
519 |
Q |
| |
|
|||| |
|
|
| T |
15595326 |
actt |
15595329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 175; E-Value: 1e-93
Query Start/End: Original strand, 261 - 519
Target Start/End: Original strand, 17817365 - 17817623
Alignment:
| Q |
261 |
aaggaagtctttgtagcaattattttttaaggggttgctgattttttactctgtaaaattccattgtctttagatctcttcaatgtcgctaatgtatata |
360 |
Q |
| |
|
||||||||||||||||||||||||||||||||| | |||||||||||| | ||||||||| ||||| |||||||||||||||||||||||| |||||| |
|
|
| T |
17817365 |
aaggaagtctttgtagcaattattttttaagggatggctgattttttattttgtaaaattagattgtatttagatctcttcaatgtcgctaacatatata |
17817464 |
T |
|
| Q |
361 |
cacgggtctattttagctatttgagataattagtggtgtatctaaatagatagacctgactacaatctcgaatgttgattgtagtatatgctcttttgat |
460 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |||| |||||||||| || |||||||||||||||| |
|
|
| T |
17817465 |
cacgggtctattttaactatttgagataattagtggtgtatctaaataaatagacctgactactgtctcaaatgttgattataatatatgctcttttgat |
17817564 |
T |
|
| Q |
461 |
gctttgataaatattttaaaaaggtgcacatttataatgtttgtgtagtatgcttactt |
519 |
Q |
| |
|
|||||| |||||||||||||||| ||||||||| ||||||| ||||| ||||||||||| |
|
|
| T |
17817565 |
gctttggtaaatattttaaaaagatgcacatttctaatgttcgtgtaatatgcttactt |
17817623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 175; E-Value: 1e-93
Query Start/End: Original strand, 261 - 519
Target Start/End: Complemental strand, 19049636 - 19049378
Alignment:
| Q |
261 |
aaggaagtctttgtagcaattattttttaaggggttgctgattttttactctgtaaaattccattgtctttagatctcttcaatgtcgctaatgtatata |
360 |
Q |
| |
|
||||||||||||||||||||||||||||||||| | |||||||||||| | ||||||||| ||||| |||||||||||||||||| ||||| |||||| |
|
|
| T |
19049636 |
aaggaagtctttgtagcaattattttttaagggatggctgattttttattttgtaaaattagattgtatttagatctcttcaatgttgctaacatatata |
19049537 |
T |
|
| Q |
361 |
cacgggtctattttagctatttgagataattagtggtgtatctaaatagatagacctgactacaatctcgaatgttgattgtagtatatgctcttttgat |
460 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| || |||||||||||||||| |
|
|
| T |
19049536 |
cacgggtctattttaactatttgagataattagtggtgtatctaaataaatagacctgactactgtctcgaatgttgattataatatatgctcttttgat |
19049437 |
T |
|
| Q |
461 |
gctttgataaatattttaaaaaggtgcacatttataatgtttgtgtagtatgcttactt |
519 |
Q |
| |
|
|||||| |||||||||||||||| ||||||||| ||||||| ||||| ||||||||||| |
|
|
| T |
19049436 |
gctttggtaaatattttaaaaagatgcacatttctaatgttcgtgtaatatgcttactt |
19049378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 136; E-Value: 2e-70
Query Start/End: Original strand, 271 - 519
Target Start/End: Original strand, 46200349 - 46200595
Alignment:
| Q |
271 |
ttgtagcaattattttttaaggggttgctgattttttactctgtaaaattccattgtctttagatctcttcaatgtcgctaatgtatatacacgggtcta |
370 |
Q |
| |
|
||||||||||||||| ||||||||| ||||||||||| | ||| ||||| ||||| |||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
46200349 |
ttgtagcaattatttgttaaggggtgactgattttttattatgttaaattagattgtatttagatctcttcaatgtcgctaatgcatatacacgggtcta |
46200448 |
T |
|
| Q |
371 |
ttttagctatttgagataattagtggtgtatctaaatagatagacctgactacaatctcgaatgttgattgtagtatatgctcttttgatgctttgataa |
470 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||| ||||| |||||| |||||||| |||||| |||||||||||| ||||||| |||| ||| |
|
|
| T |
46200449 |
ttttaattatttgagataattagtggtgtatctaaataaatagatctgact---gtctcgaatattgattatagtatatgctcatttgatgttttggtaa |
46200545 |
T |
|
| Q |
471 |
ata-ttttaaaaaggtgcacatttataatgtttgtgtagtatgcttactt |
519 |
Q |
| |
|
||| |||||||||||||||||||| ||||||| ||||| ||||||||||| |
|
|
| T |
46200546 |
atatttttaaaaaggtgcacatttctaatgttcgtgtaatatgcttactt |
46200595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 123; E-Value: 1e-62
Query Start/End: Original strand, 28 - 221
Target Start/End: Original strand, 15594309 - 15594505
Alignment:
| Q |
28 |
atagttactctggttaggcgttcatataggattaggagcattgccacttctcctgtataagttgtttttgatggctcttctacataacctaacgagcgaa |
127 |
Q |
| |
|
|||||||||| ||||| ||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| |
|
|
| T |
15594309 |
atagttactccggttatgcgttcacgtaggattaggggcattgccacttctcctgtataagttgtttttgatggctctcctacataacctaaccagcgaa |
15594408 |
T |
|
| Q |
128 |
taactttgcttgcctgcaatgtgaatgtatctttttctattttctattaacagaagtctcttatcttctgaa---tcttctagctttgcttataaaa |
221 |
Q |
| |
|
||||||||||||| | |||| |||||||||| |||||||||||||||||||| |||| |||| ||||||||| |||||||| ||||||||||||| |
|
|
| T |
15594409 |
taactttgcttgcttacaatctgaatgtatccttttctattttctattaacaaaagtgtcttgtcttctgaatcttcttctagttttgcttataaaa |
15594505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 125 - 221
Target Start/End: Original strand, 46199721 - 46199817
Alignment:
| Q |
125 |
gaataactttgcttgcctgcaatgtgaatgtatctttttctattttctattaacagaagtctcttatcttctgaatcttctagctttgcttataaaa |
221 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| |
|
|
| T |
46199721 |
gaataactttgcttgcctgcaatgtgagtgtatctttttctattttctattaacagaagtgtcttgtcttctgaatcttctagctttgcttataaaa |
46199817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 28 - 87
Target Start/End: Original strand, 46199656 - 46199715
Alignment:
| Q |
28 |
atagttactctggttaggcgttcatataggattaggagcattgccacttctcctgtataa |
87 |
Q |
| |
|
|||||||||| ||||||||||||| |||||||||||||||| ||||||||| ||||||| |
|
|
| T |
46199656 |
atagttactccggttaggcgttcaagtaggattaggagcattaccacttctcttgtataa |
46199715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 459 - 504
Target Start/End: Original strand, 19124001 - 19124046
Alignment:
| Q |
459 |
atgctttgataaatattttaaaaaggtgcacatttataatgtttgt |
504 |
Q |
| |
|
|||||||||||||||||||| |||| || |||||||||||||||| |
|
|
| T |
19124001 |
atgctttgataaatattttagaaagatgtgcatttataatgtttgt |
19124046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 213; Significance: 1e-116; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 216 - 516
Target Start/End: Complemental strand, 41914553 - 41914253
Alignment:
| Q |
216 |
ataaaacaaaattgtgtactgcatcttcaaatactattcaaagggaaggaagtctttgtagcaattattttttaaggggttgctgattttttactctgta |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| ||||||||||| |||||| |
|
|
| T |
41914553 |
ataaaacaaaattgtgtactgcatcttcaaatactattcaaaagaaaggaagtctttgtagcaattattttttaaggggtgcctgattttttattctgta |
41914454 |
T |
|
| Q |
316 |
aaattccattgtctttagatctcttcaatgtcgctaatgtatatacacgggtctattttagctatttgagataattagtggtgtatctaaatagatagac |
415 |
Q |
| |
|
||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |||||||| ||||||||||||||||||||| |
|
|
| T |
41914453 |
aaattagattgtatttagatctcttcaatgtcgctaatgtatatacacaggtctattttaactatttgtgataattaatggtgtatctaaatagatagat |
41914354 |
T |
|
| Q |
416 |
ctgactacaatctcgaatgttgattgtagtatatgctcttttgatgctttgataaatattttaaaaaggtgcacatttataatgtttgtgtagtatgctt |
515 |
Q |
| |
|
|||||||| ||||||||||| ||| ||||||||| ||||||||||||||||||||||||||||||||||| |||||| ||||||| ||||| ||||||| |
|
|
| T |
41914353 |
ctgactactgtctcgaatgttaattatagtatatgttcttttgatgctttgataaatattttaaaaaggtgtacatttctaatgttcgtgtaatatgctt |
41914254 |
T |
|
| Q |
516 |
a |
516 |
Q |
| |
|
| |
|
|
| T |
41914253 |
a |
41914253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 148; E-Value: 1e-77
Query Start/End: Original strand, 324 - 519
Target Start/End: Original strand, 43118646 - 43118841
Alignment:
| Q |
324 |
ttgtctttagatctcttcaatgtcgctaatgtatatacacgggtctattttagctatttgagataattagtggtgtatctaaatagatagacctgactac |
423 |
Q |
| |
|
|||| ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||| |
|
|
| T |
43118646 |
ttgtatttagatttcttcaatgtcgctaatgtatatacacgggtctattttaactatttgagatgattagtggtgtatctaagtagatagacctgactac |
43118745 |
T |
|
| Q |
424 |
aatctcgaatgttgattgtagtatatgctcttttgatgctttgataaatattttaaaaaggtgcacatttataatgtttgtgtagtatgcttactt |
519 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| ||||| ||||||||||| |
|
|
| T |
43118746 |
tgtctcgaatgttgattatagtatatgctcttttgatgctttggtaaatattttaaaaaggtgcacatttctaatgttcgtgtaatatgcttactt |
43118841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 216 - 308
Target Start/End: Original strand, 43118520 - 43118612
Alignment:
| Q |
216 |
ataaaacaaaattgtgtactgcatcttcaaatactattcaaagggaaggaagtctttgtagcaattattttttaaggggttgctgatttttta |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||| | ||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
43118520 |
ataaaacaaaattgtgtactgcatcttcaaaaactattcaaaagaaaggaagtctttgtagcaattattttttaaggggtggctgatttttta |
43118612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 125 - 214
Target Start/End: Complemental strand, 41915173 - 41915085
Alignment:
| Q |
125 |
gaataactttgcttgcctgcaatgtgaatgtatctttttctattttctattaacagaagtctcttatcttctgaatcttctagctttgct |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| |||||||||||||||||||||||| |
|
|
| T |
41915173 |
gaataactttgcttgcctgcaatgtgaatgtatctttttctattttctattaa-agaagtgtcttgtcttctgaatcttctagctttgct |
41915085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 125 - 221
Target Start/End: Original strand, 43117903 - 43117999
Alignment:
| Q |
125 |
gaataactttgcttgcctgcaatgtgaatgtatctttttctattttctattaacagaagtctcttatcttctgaatcttctagctttgcttataaaa |
221 |
Q |
| |
|
||||||||||||||| | ||| ||||||||||||||||||||||||||||||||| |||| |||| ||||||||| |||||||||||||||||||| |
|
|
| T |
43117903 |
gaataactttgcttgtcagcattgtgaatgtatctttttctattttctattaacaaaagtgtctttccttctgaattttctagctttgcttataaaa |
43117999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 87
Target Start/End: Original strand, 43117854 - 43117897
Alignment:
| Q |
44 |
ggcgttcatataggattaggagcattgccacttctcctgtataa |
87 |
Q |
| |
|
|||||||| |||||||||||||||| ||||||||||||||||| |
|
|
| T |
43117854 |
ggcgttcaagtaggattaggagcattaccacttctcctgtataa |
43117897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 232 - 269
Target Start/End: Original strand, 39542798 - 39542835
Alignment:
| Q |
232 |
tactgcatcttcaaatactattcaaagggaaggaagtc |
269 |
Q |
| |
|
||||||| |||||||||||||||||| ||||||||||| |
|
|
| T |
39542798 |
tactgcagcttcaaatactattcaaaaggaaggaagtc |
39542835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 205; Significance: 1e-111; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 205; E-Value: 1e-111
Query Start/End: Original strand, 219 - 519
Target Start/End: Original strand, 17228191 - 17228491
Alignment:
| Q |
219 |
aaacaaaattgtgtactgcatcttcaaatactattcaaagggaaggaagtctttgtagcaattattttttaaggggttgctgattttttactctgtaaaa |
318 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||| | ||||||||||||||| ||||||||||||||||| | ||||||||||| ||||||||| |
|
|
| T |
17228191 |
aaacaaaattgtgtactgcatcttcgaatactattcaaaagaaaggaagtctttgtaacaattattttttaagggatgactgattttttattctgtaaaa |
17228290 |
T |
|
| Q |
319 |
ttccattgtctttagatctcttcaatgtcgctaatgtatatacacgggtctattttagctatttgagataattagtggtgtatctaaatagatagacctg |
418 |
Q |
| |
|
|| ||||| |||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||| |
|
|
| T |
17228291 |
ttagattgtatttagatctcttcaatgtcgataatgtatatacacgggtctattttaactatttgagataatcagtggtgtatctaaataaatagacctg |
17228390 |
T |
|
| Q |
419 |
actacaatctcgaatgttgattgtagtatatgctcttttgatgctttgataaatattttaaaaaggtgcacatttataatgtttgtgtagtatgcttact |
518 |
Q |
| |
|
||||| ||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| |||||||||| ||||||| ||||| ||| |||||| |
|
|
| T |
17228391 |
actactgtctcgaatgttgattatagtatatgctcttttgatgctttggtaaatattttaaaaaagtgcacatttctaatgttcgtgtaatatacttact |
17228490 |
T |
|
| Q |
519 |
t |
519 |
Q |
| |
|
| |
|
|
| T |
17228491 |
t |
17228491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 179; E-Value: 4e-96
Query Start/End: Original strand, 261 - 519
Target Start/End: Original strand, 5240634 - 5240892
Alignment:
| Q |
261 |
aaggaagtctttgtagcaattattttttaaggggttgctgattttttactctgtaaaattccattgtctttagatctcttcaatgtcgctaatgtatata |
360 |
Q |
| |
|
||||||||||||||||||||||||||||||||| | ||||||||||| | ||||||||| ||||| |||||||||||||||||||||||| |||||| |
|
|
| T |
5240634 |
aaggaagtctttgtagcaattattttttaagggatgactgattttttattttgtaaaattagattgtatttagatctcttcaatgtcgctaacatatata |
5240733 |
T |
|
| Q |
361 |
cacgggtctattttagctatttgagataattagtggtgtatctaaatagatagacctgactacaatctcgaatgttgattgtagtatatgctcttttgat |
460 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| ||||||||||||||||||| |
|
|
| T |
5240734 |
cacgggtctattttaactatttgagataattagtggtgtatctaaataaatagacctgactactgtctcgaatgttgattatagtatatgctcttttgat |
5240833 |
T |
|
| Q |
461 |
gctttgataaatattttaaaaaggtgcacatttataatgtttgtgtagtatgcttactt |
519 |
Q |
| |
|
|||||| |||||||||||||||| ||||||||| ||||||| ||||| ||||||||||| |
|
|
| T |
5240834 |
gctttggtaaatattttaaaaagatgcacatttctaatgttcgtgtaatatgcttactt |
5240892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 125 - 221
Target Start/End: Original strand, 17226534 - 17226630
Alignment:
| Q |
125 |
gaataactttgcttgcctgcaatgtgaatgtatctttttctattttctattaacagaagtctcttatcttctgaatcttctagctttgcttataaaa |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| |||||| |||||||||||||| ||||||||| |
|
|
| T |
17226534 |
gaataactttgcttgcctgcaatgtgaatggatctttttctattttctattaacagaagtgtcttgtcttctaaatcttctagctttacttataaaa |
17226630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 28 - 87
Target Start/End: Original strand, 17226469 - 17226528
Alignment:
| Q |
28 |
atagttactctggttaggcgttcatataggattaggagcattgccacttctcctgtataa |
87 |
Q |
| |
|
|||||||||| ||||||||||||| ||||||||| |||||| ||||||||||||||||| |
|
|
| T |
17226469 |
atagttactccggttaggcgttcaagtaggattagaagcattaccacttctcctgtataa |
17226528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 446 - 505
Target Start/End: Original strand, 29201596 - 29201655
Alignment:
| Q |
446 |
atatgctcttttgatgctttgataaatattttaaaaaggtgcacatttataatgtttgtg |
505 |
Q |
| |
|
||||||||||| |||||||||||||||||||| |||| ||||||||| ||||||||||| |
|
|
| T |
29201596 |
atatgctctttcgatgctttgataaatatttttaaaaaatgcacatttctaatgtttgtg |
29201655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 474 - 519
Target Start/End: Complemental strand, 24560540 - 24560495
Alignment:
| Q |
474 |
ttttaaaaaggtgcacatttataatgtttgtgtagtatgcttactt |
519 |
Q |
| |
|
||||| |||||||||||||| ||||||||||| | ||||||||||| |
|
|
| T |
24560540 |
ttttagaaaggtgcacatttctaatgtttgtgcaatatgcttactt |
24560495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 200; Significance: 1e-108; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-108
Query Start/End: Original strand, 216 - 519
Target Start/End: Complemental strand, 29343318 - 29343016
Alignment:
| Q |
216 |
ataaaacaaaattgtgtactgcatcttcaaatactattcaaagggaaggaagtctttgtagcaattattttttaaggggttgctgattttttactctgta |
315 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||| | |||||| |||||||||||||||||||||| |||| ||| ||| ||| ||||| |
|
|
| T |
29343318 |
ataatacaaaattgtgtactgcatcttcaaatactattcaaaagaaaggaaatctttgtagcaattattttttacagggtgactgctttgttattctgtt |
29343219 |
T |
|
| Q |
316 |
aaattccattgtctttagatctcttcaatgtcgctaatgtatatacacgggtctattttagctatttgagataattagtggtgtatctaaatagatagac |
415 |
Q |
| |
|
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| || |
|
|
| T |
29343218 |
aaattagattgtatttagatctcttcaatgtcgctaatgtatatacacgggtctattttaactatttgagataattagtggtgtatctaaatagata-ac |
29343120 |
T |
|
| Q |
416 |
ctgactacaatctcgaatgttgattgtagtatatgctcttttgatgctttgataaatattttaaaaaggtgcacatttataatgtttgtgtagtatgctt |
515 |
Q |
| |
|
|||||||| ||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| |||| ||||||| ||||| ||||||| |
|
|
| T |
29343119 |
ctgactactgtctcgaatgttgattatagtatatgctcttttgatgctttggtaaatattttaaaaaggtgcatatttctaatgttcgtgtaatatgctt |
29343020 |
T |
|
| Q |
516 |
actt |
519 |
Q |
| |
|
|||| |
|
|
| T |
29343019 |
actt |
29343016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 154; E-Value: 3e-81
Query Start/End: Original strand, 271 - 519
Target Start/End: Complemental strand, 35829069 - 35828819
Alignment:
| Q |
271 |
ttgtagcaattattttttaaggggttgctgattttttactctgtaaaattccattgtctttagatctcttcaatgtcgctaatgtatatacacgggtcta |
370 |
Q |
| |
|
||||||||||||||| ||||||||| ||||||||||| || || ||||| ||||| ||||||| |||||||||||||||||||||||||||| ||||| |
|
|
| T |
35829069 |
ttgtagcaattatttgttaaggggtgactgattttttattccgttaaattagattgtatttagatatcttcaatgtcgctaatgtatatacacgagtcta |
35828970 |
T |
|
| Q |
371 |
ttttagctatttgagataattagtggtgtatctaaatagatagacctgactacaa---tctcgaatgttgattgtagtatatgctcttttgatgctttga |
467 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||| |||||||||||||| | ||||| ||||||||| ||||||||||||||||||||||||| |
|
|
| T |
35828969 |
ttttaactatttgagataattagtggtgtatctaaataaatagacctgactactactgtctcg-atgttgattatagtatatgctcttttgatgctttgg |
35828871 |
T |
|
| Q |
468 |
taaatattttaaaaaggtgcacatttataatgtttgtgtagtatgcttactt |
519 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| ||||| ||||||||||| |
|
|
| T |
35828870 |
taaatattttaaaaaggtgcacatttctaatgttcgtgtaatatgcttactt |
35828819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 28 - 211
Target Start/End: Original strand, 55213253 - 55213439
Alignment:
| Q |
28 |
atagttactctggttaggcgttcatataggattaggagcattgccacttctcctgtataagttgtttttgatggctcttctaca---taacctaacgagc |
124 |
Q |
| |
|
|||||||||| ||||||||||||| ||||||||||||||||||||||||||| ||||||| ||||||| ||||||| ||||| ||||||||| || |
|
|
| T |
55213253 |
atagttactccggttaggcgttcaagtaggattaggagcattgccacttctccagtataagctgtttttattggctctcctacagcataacctaacctgc |
55213352 |
T |
|
| Q |
125 |
gaataactttgcttgcctgcaatgtgaatgtatctttttctattttctattaacagaagtctcttatcttctgaatcttctagcttt |
211 |
Q |
| |
|
| |||||||||| ||||||||||||||||||| || |||||||||||||||||||||||| |||| ||||||||||||||||||||| |
|
|
| T |
55213353 |
gcataactttgcatgcctgcaatgtgaatgtacctgtttctattttctattaacagaagtgtcttgtcttctgaatcttctagcttt |
55213439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 88; E-Value: 8e-42
Query Start/End: Original strand, 125 - 220
Target Start/End: Complemental strand, 29343935 - 29343840
Alignment:
| Q |
125 |
gaataactttgcttgcctgcaatgtgaatgtatctttttctattttctattaacagaagtctcttatcttctgaatcttctagctttgcttataaa |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| |
|
|
| T |
29343935 |
gaataactttgcttgcctgcaatgtgaatgtatctttttctattttctattaacagaagtgtcttgtcttctgaatcttctagctttgcttataaa |
29343840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 125 - 221
Target Start/End: Original strand, 33509548 - 33509643
Alignment:
| Q |
125 |
gaataactttgcttgcctgcaatgtgaatgtatctttttctattttctattaacagaagtctcttatcttctgaatcttctagctttgcttataaaa |
221 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| ||||||||||||||||||||||||||||||| |
|
|
| T |
33509548 |
gaataactttgcttgcctgcaatgtgaatgtatctttttctattttctattaaca-aagtgtcttgtcttctgaatcttctagctttgcttataaaa |
33509643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 125 - 221
Target Start/End: Complemental strand, 35829697 - 35829601
Alignment:
| Q |
125 |
gaataactttgcttgcctgcaatgtgaatgtatctttttctattttctattaacagaagtctcttatcttctgaatcttctagctttgcttataaaa |
221 |
Q |
| |
|
|||||| ||| ||||||| ||||||||||||||||||| | ||||| |||||| |||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
35829697 |
gaataaatttccttgcctacaatgtgaatgtatcttttaccattttttattaagagaagtgtcttatcttctgaatcttctagctttgcttataaaa |
35829601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 28 - 87
Target Start/End: Complemental strand, 29344000 - 29343941
Alignment:
| Q |
28 |
atagttactctggttaggcgttcatataggattaggagcattgccacttctcctgtataa |
87 |
Q |
| |
|
|||||||||| ||||||||||||| ||||||||||||| || ||||||||||||||||| |
|
|
| T |
29344000 |
atagttactccggttaggcgttcaagtaggattaggagccttaccacttctcctgtataa |
29343941 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 28 - 87
Target Start/End: Original strand, 33509483 - 33509542
Alignment:
| Q |
28 |
atagttactctggttaggcgttcatataggattaggagcattgccacttctcctgtataa |
87 |
Q |
| |
|
||||||||| ||||||||||||| |||||||||||||||| ||||||||| ||||||| |
|
|
| T |
33509483 |
atagttacttaggttaggcgttcaagtaggattaggagcattaccacttctcatgtataa |
33509542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 28 - 87
Target Start/End: Complemental strand, 35829762 - 35829703
Alignment:
| Q |
28 |
atagttactctggttaggcgttcatataggattaggagcattgccacttctcctgtataa |
87 |
Q |
| |
|
|||||||||| ||||||||||||| |||| ||||||||||| ||||||||| ||||||| |
|
|
| T |
35829762 |
atagttactccggttaggcgttcaagtaggtttaggagcattaccacttctcttgtataa |
35829703 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 519 - 578
Target Start/End: Complemental strand, 1689879 - 1689820
Alignment:
| Q |
519 |
tcataagttaaatgcacaagactcagttgctatctttccaacatttctgctaccatacat |
578 |
Q |
| |
|
|||||||||||||||||| | ||||||| ||||||| |||| ||||||||| ||||||| |
|
|
| T |
1689879 |
tcataagttaaatgcacatgcctcagttactatcttcccaaggtttctgctatcatacat |
1689820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 51; Significance: 1e-19; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 802 - 912
Target Start/End: Original strand, 1618683 - 1618793
Alignment:
| Q |
802 |
actaaatctcaaactatttaatatcattgcaaaatatcaagattttttggcacatcaagtgacagagcaaacttattttatccagaatattgtgctacca |
901 |
Q |
| |
|
||||||||||||||||| |||||||||| ||||||||||||| | | ||||||||||| ||| |||||||||||| | |||||| ||||||||||| |
|
|
| T |
1618683 |
actaaatctcaaactatcaaatatcattgtcaaatatcaagattctcggatacatcaagtgagagatcaaacttattttgtgcagaatcttgtgctacca |
1618782 |
T |
|
| Q |
902 |
attgtaaccat |
912 |
Q |
| |
|
| ||||||||| |
|
|
| T |
1618783 |
actgtaaccat |
1618793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 683 - 744
Target Start/End: Original strand, 1618617 - 1618678
Alignment:
| Q |
683 |
tcacttatctgatcaatgtagcaaattatctttaatctttcaagaacatcataagagaataa |
744 |
Q |
| |
|
||||| ||||||||||||||||||||||||| ||||||||||| |||||||||||| ||||| |
|
|
| T |
1618617 |
tcactaatctgatcaatgtagcaaattatctataatctttcaacaacatcataagaaaataa |
1618678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 9e-17; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 683 - 744
Target Start/End: Original strand, 32573328 - 32573389
Alignment:
| Q |
683 |
tcacttatctgatcaatgtagcaaattatctttaatctttcaagaacatcataagagaataa |
744 |
Q |
| |
|
||||| ||||||||||||||||||||||||| ||||||||||| |||||||||||| ||||| |
|
|
| T |
32573328 |
tcactaatctgatcaatgtagcaaattatctataatctttcaacaacatcataagaaaataa |
32573389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 802 - 880
Target Start/End: Original strand, 32573394 - 32573472
Alignment:
| Q |
802 |
actaaatctcaaactatttaatatcattgcaaaatatcaagattttttggcacatcaagtgacagagcaaacttatttt |
880 |
Q |
| |
|
||||||||||||||||| |||||||||| ||||||||||||| | | ||||||||||| ||| |||||||||||| |
|
|
| T |
32573394 |
actaaatctcaaactatcaaatatcattgtcaaatatcaagattctcggatacatcaagtgagagatcaaacttatttt |
32573472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0912 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0912
Description:
Target: scaffold0912; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 455 - 519
Target Start/End: Complemental strand, 3567 - 3502
Alignment:
| Q |
455 |
tttgatgcttt-gataaatattttaaaaaggtgcacatttataatgtttgtgtagtatgcttactt |
519 |
Q |
| |
|
||||||||||| ||||||||||||| ||||||| |||||| ||||||||||| | ||||||||||| |
|
|
| T |
3567 |
tttgatgcttttgataaatattttagaaaggtgtacatttctaatgtttgtgcaatatgcttactt |
3502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 837 - 880
Target Start/End: Complemental strand, 37221028 - 37220985
Alignment:
| Q |
837 |
atcaagattttttggcacatcaagtgacagagcaaacttatttt |
880 |
Q |
| |
|
|||||||||||||| |||||||||||| ||||||||| |||||| |
|
|
| T |
37221028 |
atcaagattttttgacacatcaagtgagagagcaaacatatttt |
37220985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 445 - 483
Target Start/End: Complemental strand, 25282345 - 25282307
Alignment:
| Q |
445 |
tatatgctcttttgatgctttgataaatattttaaaaag |
483 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| |||| |
|
|
| T |
25282345 |
tatatgctcctttgatgctttgataaatattttagaaag |
25282307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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