View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17065_low_11 (Length: 346)
Name: NF17065_low_11
Description: NF17065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17065_low_11 |
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| [»] chr3 (3 HSPs) |
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| [»] scaffold0543 (1 HSPs) |
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| [»] scaffold0492 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 237; Significance: 1e-131; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 57 - 346
Target Start/End: Original strand, 49856863 - 49857151
Alignment:
| Q |
57 |
ctcctcaataataagagtttgaagcagggggaaattttgaagcagttttatcagccagctccacttcaacatcccacgattatgcataaagtccaatcta |
156 |
Q |
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| T |
49856863 |
ctcctcaataataagagtttgaagcagggggaaattttgaagcagttttatcagccagctccacttcaacatcccacgattatgcataaagtccaatcta |
49856962 |
T |
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| Q |
157 |
agctccagatgggttaaattgtgaaacactctatgtagttcatatgaatacttctgcatcagtcacaaagacaacatattgcagggatgagtagnnnnnn |
256 |
Q |
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| T |
49856963 |
agctccaggtgggttaaattgtgaaacacgctatgtagttcatatgaatacttctgcatcagtcacaaagacaacatattgcagggatgcgtag-aaaaa |
49857061 |
T |
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| Q |
257 |
nntggtggaaaacacaggtttaaagttttgacacccacactcatcgttagagaaataacaatttactcccttaaatttgaaccagtaatt |
346 |
Q |
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| T |
49857062 |
aatggcggaaaacacaggtttaaagttttgacacccacattcatagttagagaaataacaatttactcccttaaatttgaaccagtaatt |
49857151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 67 - 184
Target Start/End: Original strand, 49868251 - 49868368
Alignment:
| Q |
67 |
ataagagtttgaagcagggggaaattttgaagcagttttatcagccagctccacttcaacatcccacgattatgcataaagtccaatctaagctccagat |
166 |
Q |
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| T |
49868251 |
ataagagtttgaagtttagggaaattttcaagcagttcaatcagccagttccacttgagcaacccaagtggacgcataaagtcgaatataagcttcaggt |
49868350 |
T |
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| Q |
167 |
gggttaaattgtgaaaca |
184 |
Q |
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| T |
49868351 |
gggttaaattatgaaaca |
49868368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 145 - 184
Target Start/End: Complemental strand, 39559435 - 39559396
Alignment:
| Q |
145 |
aagtccaatctaagctccagatgggttaaattgtgaaaca |
184 |
Q |
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| T |
39559435 |
aagtctaatataagctccagatgggttaaattgtgaaaca |
39559396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0543 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0543
Description:
Target: scaffold0543; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 61 - 184
Target Start/End: Original strand, 2378 - 2501
Alignment:
| Q |
61 |
tcaataataagagtttgaagcagggggaaattttgaagcagttttatcagccagctccacttcaacatcccacgat-tatgcataaagtccaatctaagc |
159 |
Q |
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| T |
2378 |
tcaatgataagagtttgaagtttggggaaattttcaagcagtttcattatccagctccacttcaacgatcca-gatgaatgcataaagttgaatataagc |
2476 |
T |
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| Q |
160 |
tccagatgggttaaattgtgaaaca |
184 |
Q |
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| T |
2477 |
tcaaggtgggtcaaattgtgaaaca |
2501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0492 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0492
Description:
Target: scaffold0492; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 61 - 184
Target Start/End: Original strand, 3924 - 4047
Alignment:
| Q |
61 |
tcaataataagagtttgaagcagggggaaattttgaagcagttttatcagccagctccacttcaacatcccacgat-tatgcataaagtccaatctaagc |
159 |
Q |
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| T |
3924 |
tcaatgataagagtttgaagtttggggaaattttcaagcagtttcattatccagctccacttcaacgatcca-gatgaatgcataaagttgaatataagc |
4022 |
T |
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| Q |
160 |
tccagatgggttaaattgtgaaaca |
184 |
Q |
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|| || ||||| ||||||||||||| |
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| T |
4023 |
tcaaggtgggtcaaattgtgaaaca |
4047 |
T |
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