View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17065_low_13 (Length: 282)
Name: NF17065_low_13
Description: NF17065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17065_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 273
Target Start/End: Original strand, 48882302 - 48882574
Alignment:
| Q |
1 |
acaaagctttgagagtcgttagacaccccaactgctttcactatccctcgagcaaaagatactctccatgaatggaattgtgtgcaaagagttaaacctt |
100 |
Q |
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| T |
48882302 |
acaaagctttgagagtcgttagacaccccaactgctttcactatccctcgagcaaaagttactctccatgaatggagttgtgtgcaaagagttaaacctt |
48882401 |
T |
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| Q |
101 |
aggtacaaaactcggaccacaatatctcttgggtcaaacctccgttgggtgcattaaagtgcaacatggactcataaatttttcaaaacaacgccatatc |
200 |
Q |
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| T |
48882402 |
aggtacaaaactcggaccacaatatctcttgggtcaaacctccgttgggtgcattaaagtgcaacatggactcataaatttttcaaaacaacgcgatatc |
48882501 |
T |
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| Q |
201 |
aaaatatggattttgcttctggaactctgaggggcaattcataatatgtaagtctcttttctcttattcatct |
273 |
Q |
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| T |
48882502 |
aaaatatggactttgcttctggaactctgaggggcaattcataatatgtaagtctcttttctcttattcatct |
48882574 |
T |
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Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 47 - 140
Target Start/End: Complemental strand, 52964653 - 52964560
Alignment:
| Q |
47 |
ctcgagcaaaagatactctccatgaatggaattgtgtgcaaagagttaaaccttaggtacaaaactcggaccacaatatctcttgggtcaaacc |
140 |
Q |
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| T |
52964653 |
ctcgagcaaaggatacactccatgaatggacttgtatgcaaagagctaaaccacaggtacaaaattcgaaccacatcatctcttgggtcaaacc |
52964560 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 47 - 140
Target Start/End: Complemental strand, 51492272 - 51492179
Alignment:
| Q |
47 |
ctcgagcaaaagatactctccatgaatggaattgtgtgcaaagagttaaaccttaggtacaaaactcggaccacaatatctcttgggtcaaacc |
140 |
Q |
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| T |
51492272 |
ctcgagcaaaggatacactccatgaatggacttgtatgcaaagagctaaaccacaggtacaaaattcgaaccacataatctcttgggtcaaacc |
51492179 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 47 - 140
Target Start/End: Complemental strand, 10813650 - 10813557
Alignment:
| Q |
47 |
ctcgagcaaaagatactctccatgaatggaattgtgtgcaaagagttaaaccttaggtacaaaactcggaccacaatatctcttgggtcaaacc |
140 |
Q |
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| T |
10813650 |
ctcgagcaaaggatacactccacgaatggacttgtatgcaaagagctaaaccacaggtacaaaattcgaaccacatcatctcttgggttaaacc |
10813557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 142
Target Start/End: Complemental strand, 33495630 - 33495526
Alignment:
| Q |
38 |
tcactatccctcgagcaaaagatactctccatgaatggaattgtgtgcaaagagttaaaccttaggtacaaaactcggaccacaatatctcttgggtcaa |
137 |
Q |
| |
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|||| ||| |||||||||| || ||||| |||||||||||||| ||||||||| ||| ||||| || |||| |||| || ||||||||||||| || |
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| T |
33495630 |
tcaccatctctcgagcaaatgacactcttcatgaatggaattgcatgcaaagagcaaaaacttagccactaaacccggatcatcatatctcttgggttaa |
33495531 |
T |
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| Q |
138 |
acctc |
142 |
Q |
| |
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||||| |
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| T |
33495530 |
acctc |
33495526 |
T |
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