View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17065_low_17 (Length: 252)

Name: NF17065_low_17
Description: NF17065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17065_low_17
NF17065_low_17
[»] chr8 (4 HSPs)
chr8 (15-252)||(8705995-8706231)
chr8 (53-194)||(8691370-8691511)
chr8 (53-228)||(8744652-8744817)
chr8 (152-230)||(8724900-8724978)


Alignment Details
Target: chr8 (Bit Score: 214; Significance: 1e-117; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 15 - 252
Target Start/End: Original strand, 8705995 - 8706231
Alignment:
Q  15 gagaaaaaagctgaaaaggaagctgaagcagatatacatgatgaaggggagccaagtagacacatgagttctgatcatgaaagtcaagaaatttttgaag 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  8705995 gagaaaaaagctgaaaaggaagctgaagcagatatacatgatgaaggggagccaagtagacacatgagttctgaccatgaaagtcaagaaatttttgaag 8706094  T
Q  115 gaattcctgatgtaaggagttcatccttggtaaatgatgatagaaattttgagaacaaagttttggatttaaacctttctacatgagacatgctgagaac 214  Q
    ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||    
T  8706095 gaattcctgatgtaaggagttcatccttgataaatgat-atagaaattttgagaacaaagttttggatttaagcctttctacatgaaacatgctgagaac 8706193  T
Q  215 ttatatttgttttataggtgagtgaaactttgccagaa 252  Q
    ||||||||||||||||||||||||||||||||||||||    
T  8706194 ttatatttgttttataggtgagtgaaactttgccagaa 8706231  T

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Target: chr8; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 53 - 194
Target Start/End: Original strand, 8691370 - 8691511
Alignment:
Q  53 tgatgaaggggagccaagtagacacatgagttctgatcatgaaagtcaagaaatttttgaaggaattcctgatgtaaggagttcatccttggtaaatgat 152  Q
    ||||||||||||||| ||| ||||||||||||| ||||| |||| ||||||||   |||||||||||||||||||||||| ||||| |||| |||||||     
T  8691370 tgatgaaggggagcctagtcgacacatgagttccgatcacgaaaatcaagaaacagttgaaggaattcctgatgtaaggatttcattcttgataaatgac 8691469  T
Q  153 gatagaaattttgagaacaaagttttggatttaaacctttct 194  Q
     ||||||||||||| |||||||||||   |||||||||||||    
T  8691470 aatagaaattttgaaaacaaagttttaattttaaacctttct 8691511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 53 - 228
Target Start/End: Original strand, 8744652 - 8744817
Alignment:
Q  53 tgatgaaggggagccaagtagacacatgagttctgatcatgaaagtcaagaaatttttgaaggaattcctgatgtaaggagttcatccttggtaaatgat 152  Q
    ||||| ||||||| |||||||||||||||| ||| |  | |||| ||||||||  || ||||||||| |  ||||||| ||||||||||||             
T  8744652 tgatgtaggggagtcaagtagacacatgagctctcactacgaaaatcaagaaacattagaaggaatttcaaatgtaagaagttcatccttg--------- 8744742  T
Q  153 gatagaaattttgagaacaaagttttggatttaaacctttctacatgagacatgctgagaacttatatttgtttta 228  Q
     ||||||||||||| ||||||||||||| |||| ||  ||  |||||| ||||||| |||||||||| ||||||||    
T  8744743 -atagaaattttgaaaacaaagttttggctttacacaatttcacatgaaacatgctaagaacttatacttgtttta 8744817  T

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Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 152 - 230
Target Start/End: Original strand, 8724900 - 8724978
Alignment:
Q  152 tgatagaaattttgagaacaaagttttggatttaaacctttctacatgagacatgctgagaacttatatttgttttata 230  Q
    ||||||||||||| | | | |||| |||| |||| ||||||| |||||| |||||||||||||||||| ||||||||||    
T  8724900 tgatagaaattttcaaagccaagtcttggttttacacctttccacatgaaacatgctgagaacttatacttgttttata 8724978  T

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