View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17065_low_4 (Length: 551)
Name: NF17065_low_4
Description: NF17065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17065_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 499; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 499; E-Value: 0
Query Start/End: Original strand, 1 - 523
Target Start/End: Original strand, 33092463 - 33092985
Alignment:
| Q |
1 |
caaacatgccctgaaaaagaatgacaacgagttcatcccaaaaaagaaaggcagaagactttgatgatttactaccagaagattgttgggaatttgtatt |
100 |
Q |
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| T |
33092463 |
caaacatgctctaaaaaagaatgacaacgagttcatcccaaaaaagaaaggcagaagactttgatgatttactaccagaagattgttgggaatttgtatt |
33092562 |
T |
|
| Q |
101 |
atcaaaactcctcaagatcgataacatcgaccaccgtaaccgttatataaggcagactctatcctttgtctccaaaaggttctatccaccagcggttgtt |
200 |
Q |
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| T |
33092563 |
atcaaaactcctcaagatcgataacatcgaccaccgtaaccgttatataaggcagactgtatcctttgtctccaaaaggttctatccaccagcggttgtt |
33092662 |
T |
|
| Q |
201 |
tagtatattctctaacaatcttgaatccatcagtatgcctcactcgcattttccacagatttccatacctaacctccctcgacttctctcgcttccgcgg |
300 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
33092663 |
aagtatattctctcacaatcttgaatccatcagtatgcctcactcgcattttccacagattcccatacctaacctccctcgacttctctcgcttccgcgg |
33092762 |
T |
|
| Q |
301 |
cgacgacctcaactcgcttctctgtcgtgactcctgttcttgttccctctcctacctgacttccctcaacctctccaaccaccccacgttccctgcttta |
400 |
Q |
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| T |
33092763 |
cgacgacctcaactcgcttctctgtcgtgactcctgttcttgttccctctcctacctgacttccctcaacctctccaaccaccccacgttccctgcttta |
33092862 |
T |
|
| Q |
401 |
gggttggaaaaacttgtcaaaaagactcaattatccttgacctctctcacttgttctaatctcggttctcctctcaatcacactgatataaccttcatag |
500 |
Q |
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| T |
33092863 |
gggttggaaaaacttgtcaaaaagactcaattatccttgacctctctcacttgttctaatctcggttctcctctcaatcacactgatataaccttcatag |
33092962 |
T |
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| Q |
501 |
ctgattctttccctttgctcgaa |
523 |
Q |
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| T |
33092963 |
ctgattctttccctttgctcgaa |
33092985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 359 - 406
Target Start/End: Original strand, 33713758 - 33713805
Alignment:
| Q |
359 |
acttccctcaacctctccaaccaccccacgttccctgctttagggttg |
406 |
Q |
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| T |
33713758 |
acttccctcaacctctccaaccaccccaccttccctgagttagggttg |
33713805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 365 - 456
Target Start/End: Complemental strand, 33397678 - 33397587
Alignment:
| Q |
365 |
ctcaacctctccaaccaccccacgttccctgctttagggttggaaaaacttgtcaaaaagactcaattatccttgacctctctcacttgttc |
456 |
Q |
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| T |
33397678 |
ctcaacctctcaaaccaccccactttccccacgttaggattgcaaactattctcaaaaacactaaatcaaccttgacctctctcacttgttc |
33397587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 359 - 406
Target Start/End: Original strand, 33707924 - 33707971
Alignment:
| Q |
359 |
acttccctcaacctctccaaccaccccacgttccctgctttagggttg |
406 |
Q |
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| T |
33707924 |
acttccctcaacctctccaaccaccccaccttccccgagttagggttg |
33707971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 362 - 427
Target Start/End: Original strand, 27004677 - 27004742
Alignment:
| Q |
362 |
tccctcaacctctccaaccaccccacgttccctgctttagggttggaaaaacttgtcaaaaagact |
427 |
Q |
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| T |
27004677 |
tccctcaacctctccaaccacaccaccttccccgtcttagggttgcaaactcttctcaaaaagact |
27004742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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