View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17065_low_9 (Length: 411)
Name: NF17065_low_9
Description: NF17065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17065_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 16 - 402
Target Start/End: Original strand, 40107413 - 40107799
Alignment:
| Q |
16 |
tgtgctagttccgcaaatctttcatcggaatccgaaaacaccttccacgtgtcagcaagagaaacacccgcgtttaagaaatcaagcaaggccgttttgc |
115 |
Q |
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| T |
40107413 |
tgtgctagttccgcaaatctttcatcggaatccgaaaacaccttccacgtgtcagcaagagaaacatccgcgtttaagaaatcaagcaatgccgttttgc |
40107512 |
T |
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| Q |
116 |
aatcatcgttggagggagattgggagtgaagggtgtagcaaacgtcgccgttttggagatgtttgagggaaataaggtgggacccaacgacgccggtgta |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
40107513 |
aatcatcgttggagggagattgggagtgaagggtgtagcaaacgtcgccgttgtggagatgtttgagggaaataaggtgggacccaacgacaccggtgta |
40107612 |
T |
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| Q |
216 |
ttgagaaggtgcggtgtttttccagcggaaggtttgaccggtggggaaggtgagaggtaaggagagttcttgtcgggttatgttgagagggatccatgcc |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40107613 |
ttgagaaggtgcggtgtttttccagcggaaggtttgaccggtggggaaggtgagaggtaaggagagttcttgtcgggttatgttgagagggatccatgcc |
40107712 |
T |
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| Q |
316 |
cgggattttgagaggttggtggagtggcgggtttgggtatggggtgttggtggtgttgaaggtggaagaggaggaggtagtgatttt |
402 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40107713 |
cgggattttgagaggttggtggagtggcgggtttgggtatggggtgttggtggtgttgaaggtggaagaggaggaggtagtgatttt |
40107799 |
T |
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