View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17066_high_11 (Length: 311)
Name: NF17066_high_11
Description: NF17066
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17066_high_11 |
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Alignment Details
Target: chr8 (Bit Score: 150; Significance: 3e-79; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 15 - 168
Target Start/End: Original strand, 38612065 - 38612218
Alignment:
| Q |
15 |
gaaacaaaaaactataaccaaacacgcccttacatttgcacctcacttttaaattacaatgcccaacaccttcgctcattcttctggtgccgttattatt |
114 |
Q |
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| T |
38612065 |
gaaacaaaaaactataaccaaacacgcccttacatttgcacctcacttttaaattacaatgcccaacaccttcgctcattcttctggtgccgttattatt |
38612164 |
T |
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| Q |
115 |
ggtgttatctcttgtatttttcctgtttagaaaatgatctgatgttaattctta |
168 |
Q |
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| T |
38612165 |
ggtgttatctcttgtattttttctgtttagaaaatgatctgatgttaattctta |
38612218 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 160 - 311
Target Start/End: Original strand, 38613476 - 38613627
Alignment:
| Q |
160 |
taattcttactaaatatttcacagagctcctttgctttgccaacaaattcaggaacttcatatctgaaggtgccgttccatctccttctttgttctctac |
259 |
Q |
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| T |
38613476 |
taattcttactaaatattccacagagctcctttgctttgccaacaaattcaggaacttcatatctgaaggtgccgttccatctccttctttgttctctac |
38613575 |
T |
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| Q |
260 |
ttttatttatttttctatctcgtagcaagtttggccatcatcatcatctctg |
311 |
Q |
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| T |
38613576 |
ttttatttatttttctatctcgtaacaagtttggccatcatcatcttctctg |
38613627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 64 - 114
Target Start/End: Original strand, 14667244 - 14667294
Alignment:
| Q |
64 |
taaattacaatgcccaacaccttcgctcattcttctggtgccgttattatt |
114 |
Q |
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| T |
14667244 |
taaattacaatgcctaacacctttcctcattcttctggcggcgttattatt |
14667294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 64 - 114
Target Start/End: Original strand, 1012494 - 1012544
Alignment:
| Q |
64 |
taaattacaatgcccaacaccttcgctcattcttctggtgccgttattatt |
114 |
Q |
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| T |
1012494 |
taaattacaatgcctaacacctttcctcattcttctggcggcgttattatt |
1012544 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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