View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17066_high_18 (Length: 249)
Name: NF17066_high_18
Description: NF17066
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17066_high_18 |
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Alignment Details
Target: chr5 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 3 - 239
Target Start/End: Complemental strand, 18661154 - 18660918
Alignment:
| Q |
3 |
gtatgcagattgtcttataattttgtatgacttgtcatgtgtaaaacaacacaccttgttggtgctgagatttaaagattaaaaacaatacacgggctaa |
102 |
Q |
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| T |
18661154 |
gtatgcagattgtcttataattttgtatgacttgtcatgtgtaaaacaacacaccttgttggtgctgagatttaaagattaaaaacaatacacgggctaa |
18661055 |
T |
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| Q |
103 |
aattcgatgtgtcacctcatgattgtgctgaagttgcaataacttctggctttgagttgaggcatggttatatgtttgcactgtgtttccaaaagtgtgc |
202 |
Q |
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| T |
18661054 |
gattcgatgtgtcacctcatgattgtgctgaagttgcaataacttctggctttgagttgaggcatggttatatgtttgcactgtgtttccaaaagtgtgc |
18660955 |
T |
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| Q |
203 |
caagttctttatggagttgtattattcgaacattcat |
239 |
Q |
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| T |
18660954 |
caagttctttatggagttgtattattcgaacattcat |
18660918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 3 - 239
Target Start/End: Original strand, 15082726 - 15082962
Alignment:
| Q |
3 |
gtatgcagattgtcttataattttgtatgacttgtcatgtgtaaaacaacacaccttgttggtgctgagatttaaagattaaaaacaatacacgggctaa |
102 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
15082726 |
gtatgcagattgtcttataattttgtatgacttgtcatgtgtaaaacaacacaccttgttggtgctgaaatttaaagattaaaaacaatacacgggctaa |
15082825 |
T |
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| Q |
103 |
aattcgatgtgtcacctcatgattgtgctgaagttgcaataacttctggctttgagttgaggcatggttatatgtttgcactgtgtttccaaaagtgtgc |
202 |
Q |
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| T |
15082826 |
gattcgatgtgtcacctcatgattgtgctgaagttgcaataacttctggctttgagttgaggcatggttatatgtttgcactgtgtttccaaaagtgtgc |
15082925 |
T |
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| Q |
203 |
caagttctttatggagttgtattattcgaacattcat |
239 |
Q |
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| T |
15082926 |
caagttctttatggagttgtattattcgaacattcat |
15082962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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