View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17066_high_21 (Length: 242)
Name: NF17066_high_21
Description: NF17066
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17066_high_21 |
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Alignment Details
Target: chr6 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 8 - 230
Target Start/End: Original strand, 1663929 - 1664151
Alignment:
| Q |
8 |
ttttattttgtttccttatctcacataacatgaagaacagcactgttaaacgtgtttgacttggagcaattctgagaagtttctcaaaaaa-----gagt |
102 |
Q |
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| T |
1663929 |
ttttgttttgtttccttatctcacataacatgaagaacgg-----ttaaacgtgtttaacttggagcaattatgagaagtttcttagaaagcgtgcgagt |
1664023 |
T |
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| Q |
103 |
gagaacaaaatatgctaaaaagattcatgttggtttgtctggtcaatcgacaatacttaaattgtcagtcatgttacaaactgttgtgtaactctttcta |
202 |
Q |
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| T |
1664024 |
gagaacaaaatatgctaaaaagattcatgttggtttgtctggtcaatcgacaatacttaaattgtcagtcatgttacaaactgttgtgtaactctttcta |
1664123 |
T |
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| Q |
203 |
gaaagagcatgcacacttgttgtttgtg |
230 |
Q |
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| T |
1664124 |
gaaagagcatgcacacttgttgtttgtg |
1664151 |
T |
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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 163
Target Start/End: Complemental strand, 22529168 - 22529104
Alignment:
| Q |
99 |
gagtgagaacaaaatatgctaaaaagattcatgttggtttgtctggtcaatcgacaatacttaaa |
163 |
Q |
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| T |
22529168 |
gagtgaggacaaaatacgctgaaaagactcatgttggtttgtagggtcagtcgacaatgcttaaa |
22529104 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 99 - 164
Target Start/End: Complemental strand, 30334843 - 30334778
Alignment:
| Q |
99 |
gagtgagaacaaaatatgctaaaaagattcatgttggtttgtctggtcaatcgacaatacttaaat |
164 |
Q |
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| T |
30334843 |
gagtgaaaacaaaacacgttaaaaagactcatgttgatttgtgggatcaatcgacaatacttaaat |
30334778 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 163
Target Start/End: Original strand, 27926111 - 27926175
Alignment:
| Q |
99 |
gagtgagaacaaaatatgctaaaaagattcatgttggtttgtctggtcaatcgacaatacttaaa |
163 |
Q |
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| T |
27926111 |
gagtgaggacaaaacatgctgaaaagactcgtgttggtttgtagggtcagtcgacaatgcttaaa |
27926175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 147
Target Start/End: Complemental strand, 27646768 - 27646720
Alignment:
| Q |
99 |
gagtgagaacaaaatatgctaaaaagattcatgttggtttgtctggtca |
147 |
Q |
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| T |
27646768 |
gagtgaggacaaaacatgctgaaaagactcatgttggtttgtatggtca |
27646720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 147
Target Start/End: Original strand, 14352016 - 14352056
Alignment:
| Q |
107 |
acaaaatatgctaaaaagattcatgttggtttgtctggtca |
147 |
Q |
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| T |
14352016 |
acaaaatatgctgaaaagactcatgttggtttgtatggtca |
14352056 |
T |
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