View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17066_high_23 (Length: 240)
Name: NF17066_high_23
Description: NF17066
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17066_high_23 |
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Alignment Details
Target: chr8 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 12 - 223
Target Start/End: Original strand, 23410257 - 23410468
Alignment:
| Q |
12 |
agcagagacaccgactggcgactggatcatccatccgtccgataattgaaggtgagaaactgttatttcgtatctttaatttcatttgtttatggttgct |
111 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
23410257 |
agcagagacaccgactggcgactggatcatccatccgtccgataattgaaggtgagaaactgttatttcgtatctttaatttcatttctttatggttgct |
23410356 |
T |
|
| Q |
112 |
tttgaagatagaattctttttctctattactagtagtaatctatgcacttctgtttcttgattttttgaaacaatagcgattttagatatatgatttaaa |
211 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23410357 |
tttgaagattgaattctttttctctattactagtagtaatctatgcacttctgtttcttgattttttgaaacaatagcgattttagatatatgatttaaa |
23410456 |
T |
|
| Q |
212 |
aacaagtgagtt |
223 |
Q |
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|||||||||||| |
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| T |
23410457 |
aacaagtgagtt |
23410468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 12 - 223
Target Start/End: Complemental strand, 23274141 - 23273925
Alignment:
| Q |
12 |
agcagagacaccgactggcgactggatcatccatccgtccgataattgaaggtgagaaactgttatttcgtatctttaatttcatttgttta-----tgg |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
23274141 |
agcagagacaccgactggcgactggatcatccatccgtccgataattgaaggtgagaaactgttatttcgtatctttaatttcatttgtttaatttatgg |
23274042 |
T |
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| Q |
107 |
ttgcttttgaagatagaattctttttctctattactagtagtaatctatgcacttctgtttcttgattttttgaaacaatagcgattttagatatatgat |
206 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23274041 |
ttgcttttgaagattgaattctttttctctattactagtagtaatctatgcacttctgtttcttgattttttgaaacaatagcgattttagatatatgat |
23273942 |
T |
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| Q |
207 |
ttaaaaacaagtgagtt |
223 |
Q |
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||||||||||||||||| |
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| T |
23273941 |
ttaaaaacaagtgagtt |
23273925 |
T |
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