View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17066_high_25 (Length: 234)
Name: NF17066_high_25
Description: NF17066
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17066_high_25 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 14 - 234
Target Start/End: Original strand, 44056574 - 44056794
Alignment:
| Q |
14 |
tttttgtgtttgaaaagaaaacaactaaccagaatttctgctatgacgcgcggctggcgaaagggcttgagaacaaagacaaatatgcgagtggctgcaa |
113 |
Q |
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| T |
44056574 |
tttttgtgtttgaaaagaaaacaactaaccagaatttctgctatgacgcgcggctggcgaaagggcttgagaacaaagacaaatatgcgagtggctgcaa |
44056673 |
T |
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| Q |
114 |
caactaaggttaattgtaagatgaaaagtggcagagaaaattccaaagggctatctccttgccatattccattcgttgttatcatggctggtgcataaca |
213 |
Q |
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| T |
44056674 |
caactaaggttaattgtaagatgaaaagtggcagagaaaattccaaagggctatctccttgccatattccattcgttgttatcatggctggtgcataaca |
44056773 |
T |
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| Q |
214 |
cactatataatcatctgtttt |
234 |
Q |
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| T |
44056774 |
cactatataatcacctgtttt |
44056794 |
T |
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Target: chr8 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 36 - 216
Target Start/End: Original strand, 39238528 - 39238708
Alignment:
| Q |
36 |
aactaaccagaatttctgctatgacgcgcggctggcgaaagggcttgagaacaaagacaaatatgcgagtggctgcaacaactaaggttaattgtaagat |
135 |
Q |
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| T |
39238528 |
aactaaccaagatttcggctataacgcgtggctgacgaatgggcttgagtatgaagacgaagattcgggtggcaataacaactaaaataacttgtagaat |
39238627 |
T |
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| Q |
136 |
gaaaagtggcagagaaaattccaaagggctatctccttgccatattccattcgttgttatcatggctggtgcataacacac |
216 |
Q |
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| T |
39238628 |
gaagagaggaagagaatagtctaaagggttatctccttgccatattccatttgttgttatcatagttggtgaataacacac |
39238708 |
T |
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