View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17066_high_29 (Length: 214)
Name: NF17066_high_29
Description: NF17066
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17066_high_29 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 3 - 214
Target Start/End: Original strand, 42107741 - 42107956
Alignment:
| Q |
3 |
tattatatagcttttaataaaatagtagcccaaaaatggtttaattttgtttgtaaaattgtccatcacgttatcccccaacatctccataactcgttga |
102 |
Q |
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| T |
42107741 |
tattatatagcttataataaaatagtagcccaaaaatggtttaattttgtttgtaaaattgtccatcacgttatcccccaacatctccataactcgttga |
42107840 |
T |
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| Q |
103 |
gttttctaccattttatttatttagattagattagatagcaggtccact----acgacaagtttatctttagaggaagtgctttgatgtatttgaatgtc |
198 |
Q |
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| T |
42107841 |
gttttctaccattttatttatttagattagattaaatagcaggtccactgaccacgacaagtttatctttagaggaagtgctttgatgtatttgaatgtc |
42107940 |
T |
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| Q |
199 |
tattgctcaggacaac |
214 |
Q |
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|||||||||||||||| |
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| T |
42107941 |
tattgctcaggacaac |
42107956 |
T |
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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 88
Target Start/End: Original strand, 38051336 - 38051384
Alignment:
| Q |
41 |
gtttaattttgtttgtaaaa-ttgtccatcacgttatcccccaacatct |
88 |
Q |
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| T |
38051336 |
gtttaattttgtttgtaaaatttgtccatcacgttaccccccaccatct |
38051384 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 92
Target Start/End: Complemental strand, 27325514 - 27325455
Alignment:
| Q |
33 |
caaaaatggtttaattttgtttgtaaaa-ttgtccatcacgttatcccccaacatctccat |
92 |
Q |
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| T |
27325514 |
caaaaaagttttaattttgtttgaaaaatttgtccatcacgtta-cccccaccatctccat |
27325455 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 92
Target Start/End: Complemental strand, 3639595 - 3639536
Alignment:
| Q |
33 |
caaaaatggtttaattttgtttgtaaaa-ttgtccatcacgttatcccccaacatctccat |
92 |
Q |
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| T |
3639595 |
caaaaaagttttaattttgtttgaaaaatttgtccatcacgtta-cccccaccatctccat |
3639536 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 92
Target Start/End: Complemental strand, 8962101 - 8962042
Alignment:
| Q |
33 |
caaaaatggtttaattttgtttgtaaaa-ttgtccatcacgttatcccccaacatctccat |
92 |
Q |
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| T |
8962101 |
caaaaaagttttaattttgtttgaaaaatttgtccatcacgtta-cccccaccatctccat |
8962042 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 92
Target Start/End: Complemental strand, 30699974 - 30699915
Alignment:
| Q |
33 |
caaaaatggtttaattttgtttgtaaaa-ttgtccatcacgttatcccccaacatctccat |
92 |
Q |
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|||||| | |||||||||||||| |||| ||||||||||||||| |||||| ||||||||| |
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| T |
30699974 |
caaaaaagttttaattttgtttgaaaaatttgtccatcacgtta-cccccaccatctccat |
30699915 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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