View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17066_low_1 (Length: 814)
Name: NF17066_low_1
Description: NF17066
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17066_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 656; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 656; E-Value: 0
Query Start/End: Original strand, 18 - 796
Target Start/End: Original strand, 3081836 - 3082617
Alignment:
| Q |
18 |
ctgtctctccttgaatgggttgcaaggtcgtannnnnnnn-ccatgagtggtgcaacgtacaattaatgtctcccctaataaaaaagatttcattttaat |
116 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3081836 |
ctgtctctccttgaatgggttgcaaggtcgtatttttttttccatgagtggtgcaacgtacaattaatgtctcccctaataaaaaagatttcattttaat |
3081935 |
T |
|
| Q |
117 |
atttgctttcactcttaaaatatgtagaacttaccatgataatatcagcatgtgaagctgatgtatattttctcaaagtaatttactattccccaccaaa |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3081936 |
atttgctttcactcttaaaatatgtagaacttaccatgataatatcagcatgtgaagctgatgtatattttctcaaagtaatttactattccccaccaaa |
3082035 |
T |
|
| Q |
217 |
ataaagaggtttatttcaaaaagcttagtggcggaagagagatattgcaagtttgaaccctaacccacgtagtaaatatccctgcaatattttactatat |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |
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| T |
3082036 |
ataaagaggtttatttcaaaaagcttagtggcggaagagagatattgcaagtttgaaccctaacccacgtagtaaatatcccttccatattttactatat |
3082135 |
T |
|
| Q |
317 |
gaactacgagacagacaaaccaaccctattttaatcaacctatagaaaattacctaacgttttattttatttaccaataagtaaatgttgctagcaattg |
416 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
3082136 |
gaactacgagacaaacaaaccaaccctattttaatcaacctatagaaaattacctaaggttttattttatttaccaataagtaaatgttgctagcaattg |
3082235 |
T |
|
| Q |
417 |
gaaaaggtgtaaaact--nnnnnnnnntcatgattatatacagatacaggtagaaaatacagttttatgcaagatgcaacttcagcaccaatcatatcct |
514 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3082236 |
gaaaaggtgtaaaactaataaaaaaaatcatgattatatacagatacaggtagaaaatacagttttatgcaagatgcaacttcagcaccaatcatatcct |
3082335 |
T |
|
| Q |
515 |
tctatgattacatcataattggtggtggcactgcagggtgtcctttggctgcaacactgtcccaaaatcatagggttttggtgcttgaacgtggtggatc |
614 |
Q |
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|||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3082336 |
actatgattacatcatagttggtggtggcaccgcagggtgtcctttggctgcaacactgtcccaaaatcatagggttttggtgcttgaacgtggtggatc |
3082435 |
T |
|
| Q |
615 |
accttatgggaatccaaacataaccaatttaagtgcctttggtgttgcactttctgatccatctccttcctctcctgctcaacgattcatttctgaagat |
714 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||| |||| |||||| |||||||||| |||||||||||||||||||||||||||||| |
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| T |
3082436 |
accttatgggaatccaaacataaccaatttaagtgcctatggtgttccactctctgatacatctccttcttctcctgctcaacgattcatttctgaagat |
3082535 |
T |
|
| Q |
715 |
ggtgttattaattcaagagctcgtgttctaggtggtggaagttgtttgaatgccggcttctatactcgtgcaagccctcgct |
796 |
Q |
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| T |
3082536 |
ggtgttattaattcaagagctcgtgttctaggtggtggaagttgtttgaatgctggcttctacactcgtgcaagccctcgct |
3082617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 330 - 796
Target Start/End: Original strand, 3090505 - 3090973
Alignment:
| Q |
330 |
gacaaaccaaccctattttaatcaacctatagaaaattacctaacgttttattttatttaccaataagtaaatgttgctagcaattggaaaaggtgtaaa |
429 |
Q |
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|||||||||| | ||| ||||||||||||||||| |||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
3090505 |
gacaaaccaaacatatattaatcaacctatagaacattacctagggttttattttatttaccaataaataaatgttgctagcaattggaaaaggtgtaaa |
3090604 |
T |
|
| Q |
430 |
actnnnnnnnnn--tcatgattatatacagatacaggtagaaaatacagttttatgcaagatgcaacttcagcaccaatcatatccttctatgattacat |
527 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3090605 |
actaataaaaaaaatcatgattatatacagatacaggtagaaaatacagttttatgcaagatgcaacttcagcaccaatcatatccttctatgattacat |
3090704 |
T |
|
| Q |
528 |
cataattggtggtggcactgcagggtgtcctttggctgcaacactgtcccaaaatcatagggttttggtgcttgaacgtggtggatcaccttatgggaat |
627 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3090705 |
cataattggtggtggcactgcagggtgtcctttggctgcaacactgtccaaaaatcatagggttttggtgcttgaacgtggtggatcaccttatgggaat |
3090804 |
T |
|
| Q |
628 |
ccaaacataaccaatttaagtgcctttggtgttgcactttctgatccatctccttcctctcctgctcaacgattcatttctgaagatggtgttattaatt |
727 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3090805 |
ccaaacataaccaatttaagtgcctttggtgttgcactttctgatccatctccttcctctcctgctcaacgattcatttctgaagatggtgttattaatt |
3090904 |
T |
|
| Q |
728 |
caagagctcgtgttctaggtggtggaagttgtttgaatgccggcttctatactcgtgcaagccctcgct |
796 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3090905 |
caagagctcgtgttctaggtggtggaagttgtttgaatgccggcttctatactcgtgcaagccctcgct |
3090973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 517 - 570
Target Start/End: Original strand, 5499448 - 5499501
Alignment:
| Q |
517 |
tatgattacatcataattggtggtggcactgcagggtgtcctttggctgcaaca |
570 |
Q |
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||||||||||| ||| | || ||||| ||||||||||||||||| ||||||||| |
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| T |
5499448 |
tatgattacataatagtgggaggtggaactgcagggtgtcctttagctgcaaca |
5499501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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