View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17066_low_11 (Length: 316)
Name: NF17066_low_11
Description: NF17066
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17066_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 10 - 299
Target Start/End: Original strand, 34880510 - 34880799
Alignment:
| Q |
10 |
aagaatatgttgggaacttatagcccacagcaggaaccatatacatatgaattggaagaagaaattaccccttcaggcttgtttgctagaggaacctatt |
109 |
Q |
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| T |
34880510 |
aagaaaatgttgggaacttatagcccacagcaggaaccatatacatatgaattggaagaagaaattaccccttcaggcttgtttgctagaggaacctatt |
34880609 |
T |
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| Q |
110 |
cagcaagaaccaaggtaacaaaattacaaaattgtatataacaacatagttcactattttctcttgaagttacttgtgtagcattgacatttcagattta |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34880610 |
cagcaagaaccaaggtaacaaaattacaaaattgtatataacaacatagttcactattttctcttgaagttacttgtgtagcattgacatttcagattta |
34880709 |
T |
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| Q |
210 |
aaatgttaaacaccaacaaaacatcgacaactatagttacattcaatcgtttttgttttctaaaattattatatacatgtcaatgttagt |
299 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34880710 |
aaatgttagacaccaacaaaacatcgacaactatagttacattcaatcgtttttgttttctaaaattattatatacatgtcaatgttagt |
34880799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 20 - 127
Target Start/End: Complemental strand, 38370959 - 38370852
Alignment:
| Q |
20 |
tgggaacttatagcccacagcaggaaccatatacatatgaattggaagaagaaattaccccttcaggcttgtttgctagaggaacctattcagcaagaac |
119 |
Q |
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||||||||| ||| || ||||| ||||||||||||||||||||||||||| ||| ||| ||||| || | |||||||||||||||||| |||||||||| |
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| T |
38370959 |
tgggaacttttagtcctcagcatgaaccatatacatatgaattggaagaaaaaactactccttctggtatatttgctagaggaacctatgcagcaagaac |
38370860 |
T |
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| Q |
120 |
caaggtaa |
127 |
Q |
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|||||||| |
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| T |
38370859 |
caaggtaa |
38370852 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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