View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17066_low_21 (Length: 243)
Name: NF17066_low_21
Description: NF17066
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17066_low_21 |
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| [»] chr5 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 18 - 243
Target Start/End: Complemental strand, 18661474 - 18661249
Alignment:
| Q |
18 |
ttattgactctgaaaacaatcttgttatgcaggtgtatcccgactccacactggattgaataacgcggctgttggttacaacgctccaaacctgttcttc |
117 |
Q |
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| T |
18661474 |
ttattgactctgaaaacaatcttgttatgcaggtgtatcccgactccacactggattgaataatgcggctgttggttacaacgctccaaacctgttcttc |
18661375 |
T |
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| Q |
118 |
atatatctcatggttattgaaatcaatctttatattcacaaggagattaaccaaagtcttccgcactataggcatttaaatcatcaagcagcatgtcgtg |
217 |
Q |
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| T |
18661374 |
atatatctcatggttattgaaatcaatctttatattcacaaggagattaaccaaagtcttccgcactataggcatttaaatcatcaagcagcatgtcgtg |
18661275 |
T |
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| Q |
218 |
tattcaaggagacaactgttttgact |
243 |
Q |
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| T |
18661274 |
tattcaaggagacaactgttttgact |
18661249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 18 - 243
Target Start/End: Original strand, 15082406 - 15082631
Alignment:
| Q |
18 |
ttattgactctgaaaacaatcttgttatgcaggtgtatcccgactccacactggattgaataacgcggctgttggttacaacgctccaaacctgttcttc |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
15082406 |
ttattgactctgaaaacaatcttgttatgcaggtgtatcccgactccacactggattgaataaagcggctgttggttacaacgctccaaacctgttctta |
15082505 |
T |
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| Q |
118 |
atatatctcatggttattgaaatcaatctttatattcacaaggagattaaccaaagtcttccgcactataggcatttaaatcatcaagcagcatgtcgtg |
217 |
Q |
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| T |
15082506 |
atatatctcatggttattgaaatcaatctttatattcacaaggagattaaccaaagtcttccgcactataggcatttaaatcatcaagcagcatgtcgtg |
15082605 |
T |
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| Q |
218 |
tattcaaggagacaactgttttgact |
243 |
Q |
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| T |
15082606 |
tattcaaggagacaactgttttgact |
15082631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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