View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17066_low_3 (Length: 508)
Name: NF17066_low_3
Description: NF17066
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17066_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 456; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 11 - 494
Target Start/End: Original strand, 3592508 - 3592991
Alignment:
| Q |
11 |
cacagaggtcaaatttacatgaacaacataagtaataaataagttaaaaagattaacaatggcaaggtactactattatatcactttagaaaaagagtaa |
110 |
Q |
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| T |
3592508 |
cacagaggtcaaatttacatgaacaacataagtaataaataagttaaaaagattaacaatggcaaggtactactattatatcactttagaaaaagagtaa |
3592607 |
T |
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| Q |
111 |
caattaaatggcaactttaattaataaggagaacagctgcgacaatgatacaaattataagggaacaacaaggtgtattgtttgaccatacggattcaat |
210 |
Q |
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| T |
3592608 |
caattaaatggcaactttaattaataaggagaacagctgcgacaatgatacaaattataagggaacaacaaggtgtattttttgaccatacgaattcaat |
3592707 |
T |
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| Q |
211 |
ttaaaagccaagcaacagaagtgattacggcaacagtaaataattcgtttcacaattagaatttaggaaaaaggggcagcacaagtaattgtattagaat |
310 |
Q |
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| T |
3592708 |
ttaaaagccaagcaacagaagtgattacggcaacagtaaataattcgtttcacaattaaaatttaggaaaaaggggcagcacaagtaattgtattagaat |
3592807 |
T |
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| Q |
311 |
caaaaatacatgtagcagcaataggaattacggtgaccatgtaaattttaaaggaatataatataaaaatgggtttaaaagcaaaataggcagcaaagca |
410 |
Q |
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||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3592808 |
caaaaatacatgtagcagcaatatgaattacggtggccatgtaaattttaaaggaatataatataaaaatgggtttaaaagcaaaataggcagcaaagca |
3592907 |
T |
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| Q |
411 |
acttaaccgtaaaagcaaatttagactgaattcgaaagtgcataaaaaggttttcgaaaatatataattgcagcaacagaaagg |
494 |
Q |
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||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3592908 |
acttaactgtaaaagcaaattttgactgaattcgaaagtgcataaaaaggttttcgaaaatatataattgcagcaacagaaagg |
3592991 |
T |
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