View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17066_low_30 (Length: 214)
Name: NF17066_low_30
Description: NF17066
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17066_low_30 |
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Alignment Details
Target: chr6 (Bit Score: 44; Significance: 3e-16; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 4482771 - 4482821
Alignment:
| Q |
1 |
tttcaaatcaaatagtaaaacattgtataaattggacagatttcatgaacgc |
52 |
Q |
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| T |
4482771 |
tttcaaatcaaatagtaaaa-attgtataaattggacagatttcatgaacgc |
4482821 |
T |
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Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 156 - 214
Target Start/End: Original strand, 4482925 - 4482985
Alignment:
| Q |
156 |
ataaagaaggccaaccaactcaccgaaattggc--atggtggaaaatcgaacatgaaagaa |
214 |
Q |
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| T |
4482925 |
ataaagaaggccaaccaacttaccaaaattggcatatggtggaaaatcgaacatgaaagaa |
4482985 |
T |
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Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 3173665 - 3173714
Alignment:
| Q |
1 |
tttcaaatcaaatagtaaaacattgtataaattggacagatttcatgaac |
50 |
Q |
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| T |
3173665 |
tttcaaatgaaatagtaaaatattgtataaattggacagattttatgaac |
3173714 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 4493848 - 4493900
Alignment:
| Q |
1 |
tttcaaatcaaata-gtaaaacattgtataaattggacagatttcatgaacgc |
52 |
Q |
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| T |
4493848 |
tttcaaatcaaataagtaaaacgttgtataaattggacagaatttatgaacgc |
4493900 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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