View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17066_low_32 (Length: 213)
Name: NF17066_low_32
Description: NF17066
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17066_low_32 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 182; Significance: 1e-98; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 15 - 196
Target Start/End: Original strand, 4173926 - 4174107
Alignment:
| Q |
15 |
catagggacgcgataatcaatgaccgaacacataccaaacaattactacgaattgacatattacaacaaatgcatgcttaagaaggtagcataaaatact |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4173926 |
catagggacgcgataatcaatgaccgaacacataccaaacaattactacgaattgacatattacaacaaatgcatgcttaagaaggtagcataaaatact |
4174025 |
T |
|
| Q |
115 |
tacacatacaaaaaagatttagtatatattaggtaaaatgaatgaatcaaagaactggttcgactaaccaacgcttgttggt |
196 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4174026 |
tacacatacaaaaaagatttagtatatattaggtaaaatgaatgaatcaaagaactggttcgactaaccaacgcttgttggt |
4174107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 20 - 196
Target Start/End: Original strand, 4175269 - 4175445
Alignment:
| Q |
20 |
ggacgcgataatcaatgaccgaacaca-taccaaacaattactacgaattgacatattacaacaaatgcatgcttaagaaggtagcataaaatacttaca |
118 |
Q |
| |
|
||||||||||||||||||| ||||||| |||||||||| | |||||||||| |||||||||||||||||||||||| |||||||||||||||||||| | |
|
|
| T |
4175269 |
ggacgcgataatcaatgactgaacacaataccaaacaagtgctacgaattgtcatattacaacaaatgcatgcttatgaaggtagcataaaatacttt-a |
4175367 |
T |
|
| Q |
119 |
catacaaaaaagatttagtatatattaggtaaaatgaatgaatcaaagaactggttcgactaaccaacgcttgttggt |
196 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
4175368 |
tatacaaaaaagatttagtatatactaggtaaaatgaatgaatcaaagaactagttcgactaaccaacgcttgttggt |
4175445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 83
Target Start/End: Complemental strand, 4042907 - 4042843
Alignment:
| Q |
20 |
ggacgcgataatcaatgaccgaacacat-accaaacaattactacgaattgacatattacaacaa |
83 |
Q |
| |
|
||||||||| ||||||||| ||||||| ||||||||| | |||| || |||||||||||||||| |
|
|
| T |
4042907 |
ggacgcgatgatcaatgactgaacacaacaccaaacaagtgctacaaaatgacatattacaacaa |
4042843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University