View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17066_low_4 (Length: 450)

Name: NF17066_low_4
Description: NF17066
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17066_low_4
NF17066_low_4
[»] chr7 (4 HSPs)
chr7 (1-435)||(27651568-27652004)
chr7 (4-93)||(43208669-43208758)
chr7 (4-69)||(32988581-32988646)
chr7 (4-56)||(33362476-33362527)
[»] chr8 (3 HSPs)
chr8 (12-56)||(39280913-39280957)
chr8 (4-44)||(34695801-34695841)
chr8 (4-56)||(7590378-7590430)
[»] chr1 (1 HSPs)
chr1 (4-56)||(45136781-45136833)
[»] chr5 (2 HSPs)
chr5 (35-90)||(7982474-7982529)
chr5 (8-91)||(972754-972837)
[»] chr4 (3 HSPs)
chr4 (32-91)||(22050625-22050683)
chr4 (32-90)||(25062245-25062303)
chr4 (33-93)||(11020167-11020227)
[»] chr3 (2 HSPs)
chr3 (33-92)||(46303295-46303354)
chr3 (5-93)||(54437561-54437648)
[»] chr6 (1 HSPs)
chr6 (4-42)||(30669728-30669766)
[»] chr2 (2 HSPs)
chr2 (4-56)||(16576208-16576260)
chr2 (4-92)||(16863382-16863468)


Alignment Details
Target: chr7 (Bit Score: 393; Significance: 0; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 1 - 435
Target Start/End: Original strand, 27651568 - 27652004
Alignment:
Q  1 actattgtaaaaataaagatgaagaaaagtgaatttttctttgataggggtaaattgcccccaaatcatgaaggagtaacgtagaaaaaaccactgctat 100  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27651568 actattgtaaaaataaagatgaagaaaaatgaatttttctttgatagggctaaattgcccccaaatcatgaaggagtaacgtagaaaaaaccactgctat 27651667  T
Q  101 aacattgattgatttgctttatagaaactccatatattggtcttgtaaattgatcactttaaaagtatggtgannnnnnnccaatgaatcaatcatttgt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||    
T  27651668 aacattgattgatttgctttatagaaactccatatattggtcttgtaaattgatcactttaaaagtatggtgatttttttccaatgaatcaatcatttgt 27651767  T
Q  201 gccattaaatgtgtgttggagcattatcaaaa--tattatgttacatggttatgttaaaacactgaattatgctatcaagattagtttttccctattagg 298  Q
    ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27651768 gccattaaatgtgtgttggagcattatcaaaaaatattatgttacatggttatgttaaaacactgaattatgctatcaagattagtttttccctattagg 27651867  T
Q  299 aagagcatcgatgttgaatgggtggagaatgatagaaggaatggttttgaatgcgtagagaaaatgatggaaggagtggcaaggaataagtgtttctgtc 398  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  27651868 aagagcatcgatgttgaatgggtggagaatgatagaaggaatggttttgaatgcgtagagaaaatgatggaaggagtgacaaggaataagtgtttctgtc 27651967  T
Q  399 aaatactgcagatacgtaaaaaactcaatttgttatt 435  Q
    |||||||||||||||||||||||||||||||||||||    
T  27651968 aaatactgcagatacgtaaaaaactcaatttgttatt 27652004  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 4 - 93
Target Start/End: Complemental strand, 43208758 - 43208669
Alignment:
Q  4 attgtaaaaataaagatgaagaaaagtgaatttttctttgataggggtaaattgcccccaaatcatgaaggagtaacgtagaaaaaacca 93  Q
    ||||||| ||||||||||||||||| | | ||||| || ||||||| |||||| ||| ||| |||| ||||  ||| |||||||||||||    
T  43208758 attgtaagaataaagatgaagaaaaataactttttattcgatagggataaattaccctcaattcatcaagggataatgtagaaaaaacca 43208669  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 4 - 69
Target Start/End: Original strand, 32988581 - 32988646
Alignment:
Q  4 attgtaaaaataaagatgaagaaaagtgaatttttctttgataggggtaaattgcccccaaatcat 69  Q
    ||||||| |||||||||||||||||    |||||||||||||| | ||||||| ||||||| ||||    
T  32988581 attgtaagaataaagatgaagaaaatatgatttttctttgatatgtgtaaattacccccaattcat 32988646  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 4 - 56
Target Start/End: Original strand, 33362476 - 33362527
Alignment:
Q  4 attgtaaaaataaagatgaagaaaagtgaatttttctttgataggggtaaatt 56  Q
    |||||||||| ||| ||||||||||| ||||||||||||||||  ||||||||    
T  33362476 attgtaaaaaaaaa-atgaagaaaagagaatttttctttgatataggtaaatt 33362527  T

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Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 39280957 - 39280913
Alignment:
Q  12 aataaagatgaagaaaagtgaatttttctttgataggggtaaatt 56  Q
    |||||||||||||||||| | ||||||||||||||||||||||||    
T  39280957 aataaagatgaagaaaaggggatttttctttgataggggtaaatt 39280913  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 4 - 44
Target Start/End: Complemental strand, 34695841 - 34695801
Alignment:
Q  4 attgtaaaaataaagatgaagaaaagtgaatttttctttga 44  Q
    ||||||| |||||||||||||||||| ||||||||||||||    
T  34695841 attgtaagaataaagatgaagaaaagagaatttttctttga 34695801  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 4 - 56
Target Start/End: Original strand, 7590378 - 7590430
Alignment:
Q  4 attgtaaaaataaagatgaagaaaagtgaatttttctttgataggggtaaatt 56  Q
    ||||||| |||||||| |||||||| ||| ||||||| | |||||||||||||    
T  7590378 attgtaagaataaagacgaagaaaaatgagtttttctataataggggtaaatt 7590430  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 4 - 56
Target Start/End: Original strand, 45136781 - 45136833
Alignment:
Q  4 attgtaaaaataaagatgaagaaaagtga-atttttctttgataggggtaaatt 56  Q
    ||||||| ||||||||||||||||| ||| ||||||||||||||||||||||||    
T  45136781 attgtaagaataaagatgaagaaaa-tgagatttttctttgataggggtaaatt 45136833  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 35 - 90
Target Start/End: Original strand, 7982474 - 7982529
Alignment:
Q  35 ttttctttgataggggtaaattgcccccaaatcatgaaggagtaacgtagaaaaaa 90  Q
    |||||||||| ||||||||||| |||||||| ||| |||| | |||||||||||||    
T  7982474 ttttctttgaaaggggtaaattacccccaaaacatcaaggggaaacgtagaaaaaa 7982529  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 8 - 91
Target Start/End: Complemental strand, 972837 - 972754
Alignment:
Q  8 taaaaataaagatgaagaaaagtgaattttt-ctttgataggggtaaattgcccccaaatcatgaaggagtaacgtagaaaaaac 91  Q
    |||||||||||| ||| |||| ||||||||| |||||| | || |||||| |||||||||||| ||||  |||||| ||||||||    
T  972837 taaaaataaagaggaaaaaaa-tgaattttttctttgaaatggataaattacccccaaatcattaagggataacgtcgaaaaaac 972754  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 32 - 91
Target Start/End: Complemental strand, 22050683 - 22050625
Alignment:
Q  32 aatttttctttgataggggtaaattgcccccaaatcatgaaggagtaacgtagaaaaaac 91  Q
    ||||||||||| | ||||||||||| |||| ||||||| |||| ||||||||||||||||    
T  22050683 aatttttctttaaaaggggtaaattacccc-aaatcatcaaggggtaacgtagaaaaaac 22050625  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 32 - 90
Target Start/End: Complemental strand, 25062303 - 25062245
Alignment:
Q  32 aatttttctttgataggggtaaattgcccccaaatcatgaaggagtaacgtagaaaaaa 90  Q
    ||||||||||||||| ||||||||| |||||||||||  || | |||| ||||||||||    
T  25062303 aatttttctttgatatgggtaaattacccccaaatcagtaaagggtaatgtagaaaaaa 25062245  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 33 - 93
Target Start/End: Original strand, 11020167 - 11020227
Alignment:
Q  33 atttttctttgataggggtaaattgcccccaaatcatgaaggagtaacgtagaaaaaacca 93  Q
    ||||||||||||||  ||||||||  |||||| |||| |||| ||| ||||||||||||||    
T  11020167 atttttctttgatattggtaaatttaccccaattcattaaggggtatcgtagaaaaaacca 11020227  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 33 - 92
Target Start/End: Complemental strand, 46303354 - 46303295
Alignment:
Q  33 atttttctttgataggggtaaattgcccccaaatcatgaaggagtaacgtagaaaaaacc 92  Q
    |||||||||||||||| ||||||| | ||||| |||| ||||| ||| ||||||||||||    
T  46303354 atttttctttgataggagtaaattactcccaattcatcaaggaataatgtagaaaaaacc 46303295  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 5 - 93
Target Start/End: Complemental strand, 54437648 - 54437561
Alignment:
Q  5 ttgtaaaaataaagatgaagaaaagtgaatttttc-tttgataggggtaaattgcccccaaatcatgaaggagtaacgtagaaaaaacca 93  Q
    |||||| ||||||||||| ||||| ||| |||||| |||||||||| |||||| |||  || | ||||||| ||||||||||||||||||    
T  54437648 ttgtaataataaagatgaggaaaa-tgagtttttcctttgataggg-taaattacccttaatttatgaaggggtaacgtagaaaaaacca 54437561  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 4 - 42
Target Start/End: Original strand, 30669728 - 30669766
Alignment:
Q  4 attgtaaaaataaagatgaagaaaagtgaatttttcttt 42  Q
    ||||||| ||||||||||||||||| |||||||||||||    
T  30669728 attgtaagaataaagatgaagaaaaatgaatttttcttt 30669766  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 4 - 56
Target Start/End: Complemental strand, 16576260 - 16576208
Alignment:
Q  4 attgtaaaaataaagatgaagaaaagtgaatttttctttgataggggtaaatt 56  Q
    ||||||| || |||| ||||||||||  |||||||||||||||||| ||||||    
T  16576260 attgtaagaaaaaaggtgaagaaaagataatttttctttgatagggctaaatt 16576208  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 4 - 92
Target Start/End: Complemental strand, 16863468 - 16863382
Alignment:
Q  4 attgtaaaaataaagatgaagaaaagtgaatttttctttgataggggtaaattgcccccaaatcatgaaggagtaacgtagaaaaaacc 92  Q
    ||||||| |||||||| ||||||||  |||||||||||||||| || ||||||  |||||| |||||  || |||| ||||||||||||    
T  16863468 attgtaagaataaaga-gaagaaaaaggaatttttctttgatatggataaatt-accccaattcatggtggggtaatgtagaaaaaacc 16863382  T

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