View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17066_low_5 (Length: 395)
Name: NF17066_low_5
Description: NF17066
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17066_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 13 - 380
Target Start/End: Complemental strand, 42954297 - 42953907
Alignment:
| Q |
13 |
caaaggcacaacctaagggaaatgtgtctcctgtaaaaatgtaatta-------atcattcaatacaaataactaattagaagcaggacaaaaaacaaaa |
105 |
Q |
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| T |
42954297 |
caaaggcacaacctaagggaaatgtgtctcctgtaaaaatgtaattattaattaatcattcaatacaaataactaattagaagcaggacaaaaaacaaaa |
42954198 |
T |
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| Q |
106 |
gtcatatgaaaatgtgtaaggaatagtttctaaccaacaacagcccattgaggtaattcaccaaatttaggaagcagaagaatttttccaagatctgaaa |
205 |
Q |
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| T |
42954197 |
gtcatatgaaaatgtgtaaggaatagtttctaaccaacaacagcccattgaggtaattcaccaaatttaggaagcagaagaatttttccaagatctgaaa |
42954098 |
T |
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| Q |
206 |
caagacaataataataaagaaagggatgtcagaattggtcaaataccttgaaattgtaaatgatcttttagtca----------------gaattaaaat |
289 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
42954097 |
caagacaataataataaagaaagggatgtcagaattggtcaaataccttgaaattgtaaatgatcttttagtcaggatatgatgaatgttgaattaaaat |
42953998 |
T |
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| Q |
290 |
ataatacgaatattgaaatggtgattatgtaccatggatgagagcagtcaaatgtaaccaatcttcattaggataatcttttctaatagct |
380 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42953997 |
ataatacgaatattgaaaaggtgattatgtaccatggatgagagcagtcaaatgtaaccaatcttcattaggataatcttttctaatagct |
42953907 |
T |
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