View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17066_low_7 (Length: 372)
Name: NF17066_low_7
Description: NF17066
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17066_low_7 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 183; Significance: 6e-99; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 11 - 205
Target Start/End: Original strand, 7231339 - 7231533
Alignment:
| Q |
11 |
ccaagaatatacattatatataaatactcgagtatattctttcagtaaggaagaagatcctaattataagagggtcacttttaatataataattcatgac |
110 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
7231339 |
ccaataatatacattatatataaatactcgagtatattctttcagtaaggaagaagatcctaattgtaagagggtcacttttaatataataattcatgac |
7231438 |
T |
|
| Q |
111 |
gtggtcaaactttatgctatattgtccaggaccaaactagaaattacctctttcatcttgatgaccaggtggtatcatcacattccactcgtata |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
7231439 |
gtggtcaaactttatgctatattgtccaggaccaaactagaaattacctctttcatcttgatgaccaggtggtatcatcacattccactggtata |
7231533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 210 - 271
Target Start/End: Original strand, 7231678 - 7231739
Alignment:
| Q |
210 |
tttatttatttattctgatcacggatttatgaaatgaaaacgtagccaaatggaagccatac |
271 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7231678 |
tttatttatttattctgatcacggatttatgaaatgaaaacgtagccaaatggaagccatac |
7231739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University