View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17066_low_8 (Length: 371)
Name: NF17066_low_8
Description: NF17066
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17066_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 353
Target Start/End: Complemental strand, 53120938 - 53120589
Alignment:
| Q |
1 |
agtcattatttttaattcattacnnnnnnnaattaatttagtggctcacacaccttaaatgtcgnnnnnnngtgtagaatttgaagaccgaatctaaccc |
100 |
Q |
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| T |
53120938 |
agtcattatttttaattcattactttttttaattaatttagtggctcacacaccttaagtgtcgagaaaaaatgtagaatttgaagaccgaacctaaccc |
53120839 |
T |
|
| Q |
101 |
ctcatatcaatgtcttagtaaccatatgctaaactgtacgatgtgataacacattatttgatgtacatgcaaaacttttttacactaatatcttatataa |
200 |
Q |
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|||||||||||||||||||||| | |||||||| |||| |||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| |
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| T |
53120838 |
ctcatatcaatgtcttagtaactacatgctaaattgtatgatgtgataacacattatttgatgtaaatgtaaaacttttttacactaatatcttatataa |
53120739 |
T |
|
| Q |
201 |
tcaaacacttttttgttttgtgaagtgtacacacacacatacatacatatattctcacattgctaagccctgtgctgcttctggtgatgccgtgagagtc |
300 |
Q |
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||||||| |||||| || ||| ||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
53120738 |
tcaaacattttttt-ttgtgttaagtgtacacacaca--tacatacatatattctcacattgctaaggcctgtgctgcttctggtgatgccgtgagagtc |
53120642 |
T |
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| Q |
301 |
agggaacttcatgatgatccctcatcgagaagttgtgtcttcgaatggagttc |
353 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53120641 |
agggaacttcatgatgatccctcatcgagaagttgtgtcttcgaatggagttc |
53120589 |
T |
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