View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17066_low_9 (Length: 361)
Name: NF17066_low_9
Description: NF17066
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17066_low_9 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 1 - 348
Target Start/End: Original strand, 25494740 - 25495087
Alignment:
| Q |
1 |
tttgtaaaaggaaaacaaaacaaaatcctcacatttcacatttattgtttccccaaataaataatcagaactccaactatacctcaaacccatgtaggat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25494740 |
tttgtaaaaggaaaacaaaacaaaatcctcacatttcacatttattgtttccccaaataaataatcagaactccaactatacctcaaacccatgtaggat |
25494839 |
T |
|
| Q |
101 |
ttatgtacnnnnnnnnngtggaaaagagaattttgannnnnnnnggtgaccaaatttcctccaagccaccataataatgcatccttaagctaagctatgt |
200 |
Q |
| |
|
|||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25494840 |
ttatgtacaaaaaaaaagtggaaaagagaattttgattttttttggtgaccaaatttcctccaagccaccataataatgcatccttaagctaagctatgt |
25494939 |
T |
|
| Q |
201 |
acttcatcatatattcatatatcactttttgcctttaatctctgttgattgtgaatgtgagtcacaagtaagtgcagcagcagcagattcaacatgtgta |
300 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25494940 |
acttcatcatatattcatatatcaccttttgcctttaatctctgttgattgtgactgtgagtcacaagtaagtgcagcagcagcagattcaacatgtgta |
25495039 |
T |
|
| Q |
301 |
agaagatattcatatatcttcttcctgagcctatcaactgtctctgtt |
348 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
25495040 |
agaagatattcatatatcttcttcctgagcctatcaattgtctctgtt |
25495087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 271 - 323
Target Start/End: Original strand, 42464784 - 42464836
Alignment:
| Q |
271 |
agtgcagcagcagcagattcaacatgtgtaagaagatattcatatatcttctt |
323 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42464784 |
agtgcagcagcggcagattcaacatgtgtaagaagatattcatatatcttctt |
42464836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University