View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17067_high_6 (Length: 281)
Name: NF17067_high_6
Description: NF17067
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17067_high_6 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 15 - 281
Target Start/End: Original strand, 39775222 - 39775489
Alignment:
| Q |
15 |
atcacatactactttttctttgttcatgcagccctttggtttgattccagtacttgaagatgatgatctcaccctctttggtatgctttcnnnnnnnnnn |
114 |
Q |
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| T |
39775222 |
atcacatactactttttctttgttcatgcagccctttggtttgattccagtacttgaagatgatgatctcaccctctttggtatgctttctttttttctt |
39775321 |
T |
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| Q |
115 |
nnncagttgatacattttttcactctgcatcacc-tttaagtttattcgaaaaatatactttgatgcgcactttcatatttataatcaagcaaatactac |
213 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
39775322 |
tttcagttgatacattttttcactctgcatcaccctttaagtttattcgaaaaatatactttgatgcgcgctttcatatttataatcaagcaaatactac |
39775421 |
T |
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| Q |
214 |
taggnnnnnnntatttattttatgtgatttctgcgcgagaagtgactctgaaatttgagaatttttgt |
281 |
Q |
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|||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| |
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| T |
39775422 |
taggaaaaaaatatttattttatgtaatttctgcgcgcgaagtgactctgaaatttgagaatttttgt |
39775489 |
T |
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