View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17067_low_4 (Length: 556)
Name: NF17067_low_4
Description: NF17067
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17067_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 244; Significance: 1e-135; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 258 - 538
Target Start/End: Original strand, 19995597 - 19995881
Alignment:
| Q |
258 |
aaagcattcccaaaatagtttttaggaagaggtggtatcattcttgctctaatatcagaattaaatctaacaacactttgttgattctcttcaagtttac |
357 |
Q |
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| T |
19995597 |
aaagcattcccaaaatagtttttgggaagaggtggtatcattcttgctctaatatcagaattaaatctaacaacactttgttgattctcttcaagtttac |
19995696 |
T |
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| Q |
358 |
gtgccttagatgcacatctccatat----atgtgcacctattgcttcatatctactaaaaggcctcgatccttttgtcttcgttgcaaaattaccatttt |
453 |
Q |
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| T |
19995697 |
gtgccttagatgcacatctccatatatatatgtgcacctattgcttcaaatctactaaaaggcctcgatccttttttcttcgttgcaaaattaccatttt |
19995796 |
T |
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| Q |
454 |
catttgcttttttcttcaacttatcaacttgttccggtgaaagcctcaacgatgttgatgaagttttcttctgtttttcttcact |
538 |
Q |
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| T |
19995797 |
catttgcttttttcttcaacttatcaacttgttccggtgaaagcctcaataatgttgatgaagttttcttctttttttcttcact |
19995881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 17 - 113
Target Start/End: Original strand, 19995430 - 19995526
Alignment:
| Q |
17 |
catatatctccatagaagaacttcttgaaaagctccaaacatacaatctggaaatgcaaacacacaagaatagatccatctccatcaggagtaagaa |
113 |
Q |
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| T |
19995430 |
catatatctccatagaagaacttcttgaaaagctccaaacatgcaatctggaaatgcaaacacacaagaatagatccatctccatcaggagtaagaa |
19995526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 17 - 111
Target Start/End: Original strand, 19995252 - 19995346
Alignment:
| Q |
17 |
catatatctccatagaagaacttcttgaaaagctccaaacatacaatctggaaatgcaaacacacaagaatagatccatctccatcaggagtaag |
111 |
Q |
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| T |
19995252 |
catatatcccaacagaagaacttatggaaaagctccaaaagtgtaatctgaaaatgcaaacacacaagaacttatccatctccatcaggattaag |
19995346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 141; Significance: 1e-73; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 258 - 538
Target Start/End: Original strand, 8323393 - 8323673
Alignment:
| Q |
258 |
aaagcattcccaaaatagtttttaggaagaggtggtatcattcttgctctaatatcagaattaaatctaacaacactttgttgattctcttcaagtttac |
357 |
Q |
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|||||||||||||||||||| || ||||||||||| | || ||||| ||||||||||| ||| |||||||| ||||||| ||||||||||||||| | || |
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| T |
8323393 |
aaagcattcccaaaatagttctttggaagaggtggaaccaatcttgttctaatatcagcattgaatctaactacactttcttgattctcttcaagctcac |
8323492 |
T |
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| Q |
358 |
gtgccttagatgcacatctccatatatgtgcacctattgcttcatatctactaaaaggcctcgatccttttgtcttcgttgcaaaattaccattttcatt |
457 |
Q |
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| T |
8323493 |
gtgccctagaagcacatttccatatatgtgcactaattgcttcgtatctactaaatggccttgaccctttattcttgattgcaagaatgtcattttcatt |
8323592 |
T |
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| Q |
458 |
tgcttttttcttcaacttatcaacttgttccggtgaaagcctcaacgatgttgatgaagttttcttctgtttttcttcact |
538 |
Q |
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| T |
8323593 |
tgcttttttcttcaacttatcaacttgttccggcgaaagtcgcaacaatgttgctgaagttttcttctttttttcttcact |
8323673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 17 - 256
Target Start/End: Original strand, 8322970 - 8323220
Alignment:
| Q |
17 |
catatatctccatagaagaacttcttgaaaagctccaaacatacaatctggaaatgcaaacacacaagaatagatccatctccatcaggagtaagaagaa |
116 |
Q |
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| T |
8322970 |
catatatccccatagaagaacttcttaaaaagctctaaaagtgcaatctgaaaatgcaaacacacaagaacagatccatctccatcaggactatgaagaa |
8323069 |
T |
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| Q |
117 |
ttaattccttatcatattgaaacgaccttgctactccaaagtaaa-----------catccataatcagcttcataaataggcatactcatccaactagt |
205 |
Q |
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| | | || |||||| | || || |||| |||||| |||| |||||| |||||||||| |||||||||||||||||||||||||| |
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| T |
8323070 |
tcactgccctatcatgtggagacacaaaagctaatccaaaataaacaggcttcccccatccaaaatcagcttcgtaaataggcatactcatccaactagt |
8323169 |
T |
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| Q |
206 |
aaactgaaaatttggatttcccaaatatggaaaattctcaccttcaccacc |
256 |
Q |
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| T |
8323170 |
aaaattaaaatttggatttccaaaatatggaatattttctcctacaccacc |
8323220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 324 - 409
Target Start/End: Original strand, 18317325 - 18317410
Alignment:
| Q |
324 |
ctaacaacactttgttgattctcttcaagtttacgtgccttagatgcacatctccatatatgtgcacctattgcttcatatctact |
409 |
Q |
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| T |
18317325 |
ctaacaacactttgttgattctcttcaagcttacgtgctttagaagcacttttccatatatgtgcactaattgcttcaaatctact |
18317410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 324 - 410
Target Start/End: Complemental strand, 18315548 - 18315462
Alignment:
| Q |
324 |
ctaacaacactttgttgattctcttcaagtttacgtgccttagatgcacatctccatatatgtgcacctattgcttcatatctacta |
410 |
Q |
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| T |
18315548 |
ctaacaacactttgttgattctcttcaagcttacgtgccttagaagcgcttttccatatatgtgcactaatagcttcaaatctacta |
18315462 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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