View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17067_low_5 (Length: 471)

Name: NF17067_low_5
Description: NF17067
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17067_low_5
NF17067_low_5
[»] scaffold0026 (2 HSPs)
scaffold0026 (122-461)||(12534-12872)
scaffold0026 (16-111)||(12437-12543)
[»] scaffold0634 (1 HSPs)
scaffold0634 (51-461)||(2747-3156)
[»] chr2 (23 HSPs)
chr2 (19-461)||(26582856-26583313)
chr2 (123-461)||(23168954-23169294)
chr2 (123-461)||(23580211-23580551)
chr2 (50-235)||(23089594-23089779)
chr2 (91-350)||(23062869-23063127)
chr2 (22-235)||(23101994-23102207)
chr2 (58-158)||(23878325-23878425)
chr2 (47-162)||(21907750-21907865)
chr2 (101-252)||(26884489-26884639)
chr2 (90-235)||(24660876-24661021)
chr2 (16-153)||(5706610-5706759)
chr2 (60-162)||(29281368-29281470)
chr2 (79-186)||(25181501-25181606)
chr2 (13-111)||(23264515-23264613)
chr2 (60-153)||(9957-10050)
chr2 (122-350)||(23264301-23264524)
chr2 (90-162)||(27208322-27208394)
chr2 (90-162)||(27210657-27210729)
chr2 (429-460)||(20261005-20261036)
chr2 (408-457)||(20914272-20914321)
chr2 (433-461)||(200822-200850)
chr2 (433-461)||(6744292-6744320)
chr2 (433-461)||(27367551-27367579)
[»] chr6 (28 HSPs)
chr6 (19-461)||(29614738-29615195)
chr6 (47-376)||(25396343-25396671)
chr6 (52-230)||(18799754-18799932)
chr6 (50-235)||(21565751-21565936)
chr6 (344-460)||(19786751-19786866)
chr6 (16-200)||(12167637-12167832)
chr6 (16-200)||(19286546-19286741)
chr6 (344-460)||(12167420-12167535)
chr6 (344-460)||(19877513-19877628)
chr6 (60-200)||(19877730-19877870)
chr6 (344-460)||(19883289-19883404)
chr6 (16-200)||(19883506-19883701)
chr6 (344-460)||(19286329-19286444)
chr6 (50-252)||(19300308-19300509)
chr6 (79-200)||(19786529-19786650)
chr6 (16-153)||(34640575-34640724)
chr6 (16-153)||(34647249-34647398)
chr6 (58-227)||(19471914-19472082)
chr6 (16-111)||(24513370-24513465)
chr6 (60-153)||(20008529-20008622)
chr6 (16-162)||(25470290-25470448)
chr6 (18-140)||(21365067-21365200)
chr6 (18-140)||(23969049-23969182)
chr6 (429-460)||(12941981-12942012)
chr6 (16-67)||(19786455-19786506)
chr6 (18-67)||(19877874-19877923)
chr6 (122-185)||(9186841-9186903)
chr6 (433-461)||(24562463-24562491)
[»] chr3 (24 HSPs)
chr3 (60-460)||(41455741-41456142)
chr3 (58-457)||(18914193-18914590)
chr3 (22-162)||(55499658-55499798)
chr3 (52-162)||(16802029-16802139)
chr3 (71-253)||(13324381-13324562)
chr3 (19-152)||(24192274-24192418)
chr3 (335-392)||(18136117-18136174)
chr3 (122-253)||(13302844-13302974)
chr3 (122-253)||(13313520-13313650)
chr3 (339-392)||(18129607-18129660)
chr3 (60-162)||(14865216-14865319)
chr3 (429-460)||(12304930-12304961)
chr3 (17-66)||(10390034-10390083)
chr3 (17-66)||(10415123-10415172)
chr3 (17-66)||(10421793-10421842)
chr3 (52-117)||(12034007-12034072)
chr3 (408-457)||(13036924-13036973)
chr3 (283-387)||(9533232-9533335)
chr3 (433-461)||(13968801-13968829)
chr3 (433-461)||(13974276-13974304)
chr3 (433-461)||(14084712-14084740)
chr3 (433-461)||(14090113-14090141)
chr3 (433-461)||(24123171-24123199)
chr3 (433-461)||(49399654-49399682)
[»] scaffold0029 (4 HSPs)
scaffold0029 (122-461)||(110939-111284)
scaffold0029 (60-158)||(91783-91881)
scaffold0029 (60-158)||(97509-97607)
scaffold0029 (19-67)||(111330-111378)
[»] scaffold0456 (4 HSPs)
scaffold0456 (122-289)||(241-407)
scaffold0456 (122-289)||(7386-7552)
scaffold0456 (16-100)||(409-504)
scaffold0456 (16-100)||(7554-7649)
[»] chr7 (32 HSPs)
chr7 (19-461)||(13123506-13123967)
chr7 (60-325)||(13742860-13743121)
chr7 (69-461)||(12710496-12710896)
chr7 (13-235)||(16676623-16676845)
chr7 (13-235)||(17650859-17651081)
chr7 (344-461)||(13742686-13742803)
chr7 (16-200)||(13006706-13006901)
chr7 (91-329)||(46625166-46625403)
chr7 (344-460)||(13006489-13006604)
chr7 (91-350)||(13678649-13678906)
chr7 (52-162)||(11389910-11390020)
chr7 (58-136)||(20311631-20311709)
chr7 (16-151)||(12591230-12591377)
chr7 (70-185)||(11383440-11383554)
chr7 (60-162)||(16090457-16090559)
chr7 (90-162)||(14320243-14320315)
chr7 (296-387)||(18607248-18607339)
chr7 (47-136)||(21231554-21231643)
chr7 (283-387)||(147453-147556)
chr7 (60-140)||(2464758-2464838)
chr7 (60-140)||(3858007-3858087)
chr7 (429-460)||(11303033-11303064)
chr7 (18-67)||(3857953-3858003)
chr7 (333-387)||(16475929-16475983)
chr7 (60-150)||(29181690-29181780)
chr7 (408-457)||(12694777-12694826)
chr7 (69-117)||(2966383-2966431)
chr7 (433-461)||(4280144-4280172)
chr7 (19-67)||(12710435-12710483)
chr7 (348-392)||(13318007-13318051)
chr7 (433-461)||(19616476-19616504)
chr7 (69-117)||(20907038-20907086)
[»] chr4 (18 HSPs)
chr4 (16-461)||(8046420-8046893)
chr4 (13-136)||(15407485-15407608)
chr4 (50-152)||(14486052-14486154)
chr4 (335-392)||(14555881-14555938)
chr4 (101-241)||(11847397-11847537)
chr4 (190-253)||(14485975-14486037)
chr4 (16-153)||(53483022-53483171)
chr4 (60-162)||(16147412-16147514)
chr4 (123-235)||(8834185-8834297)
chr4 (69-186)||(27905613-27905729)
chr4 (91-183)||(15244566-15244658)
chr4 (283-384)||(18212523-18212623)
chr4 (429-460)||(15533967-15533998)
chr4 (61-233)||(13887086-13887258)
chr4 (61-233)||(13887943-13888115)
chr4 (91-235)||(15307415-15307563)
chr4 (408-457)||(30237938-30237987)
chr4 (429-457)||(14048388-14048416)
[»] scaffold0117 (1 HSPs)
scaffold0117 (19-461)||(9167-9628)
[»] chr8 (15 HSPs)
chr8 (60-461)||(23865615-23866026)
chr8 (344-461)||(19902808-19902924)
chr8 (13-136)||(14057148-14057271)
chr8 (13-136)||(25111385-25111508)
chr8 (335-390)||(19987990-19988045)
chr8 (58-350)||(18613409-18613697)
chr8 (60-186)||(24321252-24321376)
chr8 (66-235)||(21931018-21931187)
chr8 (369-460)||(17053780-17053870)
chr8 (16-67)||(17054009-17054060)
chr8 (403-457)||(21282245-21282300)
chr8 (336-386)||(20005423-20005473)
chr8 (433-461)||(23825305-23825333)
chr8 (19-67)||(23866030-23866078)
chr8 (433-461)||(30766917-30766945)
[»] scaffold1773 (2 HSPs)
scaffold1773 (60-329)||(324-592)
scaffold1773 (344-461)||(153-269)
[»] scaffold0247 (1 HSPs)
scaffold0247 (16-235)||(10610-10829)
[»] scaffold0249 (2 HSPs)
scaffold0249 (241-392)||(7517-7667)
scaffold0249 (401-457)||(7742-7798)
[»] scaffold0154 (1 HSPs)
scaffold0154 (51-240)||(30194-30383)
[»] scaffold0053 (2 HSPs)
scaffold0053 (91-348)||(81826-82082)
scaffold0053 (60-162)||(80072-80174)
[»] scaffold0004 (2 HSPs)
scaffold0004 (34-350)||(116052-116366)
scaffold0004 (47-235)||(129204-129393)
[»] scaffold0028 (4 HSPs)
scaffold0028 (47-375)||(65265-65592)
scaffold0028 (267-329)||(1274-1336)
scaffold0028 (433-461)||(46947-46975)
scaffold0028 (433-461)||(52352-52380)
[»] chr5 (27 HSPs)
chr5 (16-460)||(23527632-23528099)
chr5 (335-392)||(22232436-22232493)
chr5 (58-222)||(18408521-18408685)
chr5 (60-140)||(19236294-19236374)
chr5 (52-111)||(22439310-22439369)
chr5 (79-186)||(22460506-22460611)
chr5 (78-186)||(34829432-34829539)
chr5 (60-186)||(22467130-22467254)
chr5 (87-178)||(20781102-20781192)
chr5 (283-350)||(23112480-23112546)
chr5 (429-460)||(37805280-37805311)
chr5 (16-66)||(20819639-20819689)
chr5 (16-66)||(20826739-20826789)
chr5 (408-457)||(10035305-10035354)
chr5 (408-457)||(18819096-18819145)
chr5 (408-457)||(21901800-21901849)
chr5 (433-461)||(1857471-1857499)
chr5 (205-237)||(20819456-20819488)
chr5 (205-237)||(20826556-20826588)
chr5 (433-461)||(21675439-21675467)
chr5 (409-457)||(21869490-21869538)
chr5 (409-457)||(21873770-21873818)
chr5 (60-140)||(28889978-28890058)
chr5 (60-140)||(28896682-28896762)
chr5 (60-140)||(28909930-28910010)
chr5 (60-140)||(28931622-28931702)
chr5 (60-140)||(28946325-28946405)
[»] scaffold0461 (2 HSPs)
scaffold0461 (13-185)||(581-752)
scaffold0461 (101-185)||(7605-7688)
[»] scaffold0139 (1 HSPs)
scaffold0139 (12-350)||(15521-15856)
[»] scaffold0025 (1 HSPs)
scaffold0025 (19-152)||(14977-15121)
[»] scaffold0138 (1 HSPs)
scaffold0138 (91-235)||(1117-1261)
[»] chr1 (15 HSPs)
chr1 (13-185)||(18712098-18712270)
chr1 (344-460)||(41110997-41111112)
chr1 (60-200)||(41111214-41111354)
chr1 (335-392)||(20941657-20941714)
chr1 (60-186)||(21710167-21710292)
chr1 (101-252)||(19961472-19961622)
chr1 (64-235)||(22030333-22030504)
chr1 (60-186)||(20851714-20851838)
chr1 (60-186)||(21705625-21705749)
chr1 (60-153)||(20858341-20858434)
chr1 (122-350)||(11157328-11157554)
chr1 (283-387)||(20438224-20438327)
chr1 (18-67)||(41111358-41111407)
chr1 (433-461)||(21542237-21542265)
chr1 (433-461)||(42095871-42095899)
[»] scaffold0124 (1 HSPs)
scaffold0124 (13-162)||(34861-35010)
[»] scaffold0235 (2 HSPs)
scaffold0235 (26-185)||(15475-15633)
scaffold0235 (26-162)||(23192-23328)
[»] scaffold0001 (3 HSPs)
scaffold0001 (344-461)||(174440-174557)
scaffold0001 (101-252)||(493650-493800)
scaffold0001 (91-235)||(525062-525205)
[»] scaffold1061 (1 HSPs)
scaffold1061 (122-329)||(1607-1813)
[»] scaffold0317 (1 HSPs)
scaffold0317 (91-350)||(542-799)
[»] scaffold0310 (1 HSPs)
scaffold0310 (19-136)||(6907-7024)
[»] scaffold0077 (3 HSPs)
scaffold0077 (22-150)||(4153-4281)
scaffold0077 (340-392)||(17972-18024)
scaffold0077 (340-392)||(23605-23657)
[»] scaffold0222 (1 HSPs)
scaffold0222 (58-222)||(16083-16247)
[»] scaffold0085 (1 HSPs)
scaffold0085 (60-186)||(4253-4377)
[»] scaffold0020 (1 HSPs)
scaffold0020 (50-350)||(102489-102787)
[»] scaffold0348 (2 HSPs)
scaffold0348 (335-392)||(1527-1584)
scaffold0348 (402-457)||(3107-3163)
[»] scaffold0476 (1 HSPs)
scaffold0476 (58-162)||(3871-3975)
[»] scaffold0090 (1 HSPs)
scaffold0090 (58-209)||(17492-17643)
[»] scaffold0261 (1 HSPs)
scaffold0261 (87-252)||(24178-24342)
[»] scaffold0031 (2 HSPs)
scaffold0031 (66-235)||(121200-121369)
scaffold0031 (66-235)||(132077-132246)
[»] scaffold0232 (1 HSPs)
scaffold0232 (128-235)||(19059-19166)
[»] scaffold0034 (1 HSPs)
scaffold0034 (69-252)||(72565-72747)
[»] scaffold0107 (1 HSPs)
scaffold0107 (13-136)||(41113-41236)
[»] scaffold0094 (1 HSPs)
scaffold0094 (122-227)||(51552-51657)
[»] scaffold0483 (1 HSPs)
scaffold0483 (101-252)||(11631-11782)
[»] scaffold0720 (1 HSPs)
scaffold0720 (51-186)||(3831-3966)
[»] scaffold0337 (1 HSPs)
scaffold0337 (283-387)||(9950-10053)
[»] scaffold0453 (1 HSPs)
scaffold0453 (123-252)||(11196-11324)
[»] scaffold0206 (1 HSPs)
scaffold0206 (101-162)||(18060-18121)
[»] scaffold0169 (1 HSPs)
scaffold0169 (191-235)||(6299-6343)
[»] scaffold1427 (1 HSPs)
scaffold1427 (283-350)||(1207-1273)
[»] scaffold0011 (2 HSPs)
scaffold0011 (403-457)||(152546-152601)
scaffold0011 (433-461)||(174529-174557)
[»] scaffold0108 (1 HSPs)
scaffold0108 (408-457)||(45691-45740)
[»] scaffold0049 (1 HSPs)
scaffold0049 (408-457)||(42875-42924)
[»] scaffold0023 (2 HSPs)
scaffold0023 (60-117)||(134867-134924)
scaffold0023 (122-186)||(134820-134882)
[»] scaffold0924 (1 HSPs)
scaffold0924 (19-67)||(1343-1391)
[»] scaffold0535 (1 HSPs)
scaffold0535 (408-455)||(5972-6020)
[»] scaffold0335 (1 HSPs)
scaffold0335 (191-235)||(3328-3372)
[»] scaffold0207 (1 HSPs)
scaffold0207 (429-457)||(8775-8803)
[»] scaffold0106 (1 HSPs)
scaffold0106 (433-461)||(38582-38610)
[»] scaffold0076 (2 HSPs)
scaffold0076 (433-461)||(30113-30141)
scaffold0076 (433-461)||(35514-35542)
[»] scaffold0006 (1 HSPs)
scaffold0006 (19-67)||(49597-49645)


Alignment Details
Target: scaffold0026 (Bit Score: 280; Significance: 1e-156; HSPs: 2)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 122 - 461
Target Start/End: Original strand, 12534 - 12872
Alignment:
Q  122 gtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggacttcttgagcattctaaaatgtttcctttaacttgt 221  Q
    |||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  12534 gtcgcttaagcgaagtgagccttagtcagcctctttctgaacttttgcttcgtgcacgaggggacttcttgagcattctaaaatatttcctttaacttgt 12633  T
Q  222 ataacccttgtataggtatcagaatcctactagaacaagctggtgatcgaattggttgatgttagtgaatttttgagatgattgagtatgaaatcaagtg 321  Q
    ||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||    
T  12634 atatcccttgtataggtatcagaatcctactagaacaagccggtgatcgaattggttgatgttagtgaattttggagatgattgagtaagaaatcaagtg 12733  T
Q  322 aatatataatttattgaatgaaattgatgtatgtgcataattataattaattgtgtatgttctggattgttagaattttcggagtagtaagtcatatgaa 421  Q
    ||| |||||  |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||     
T  12734 aatgtataa-ctattgaatgaaattgatgtatgcgcataattataattaattgtgtatgttctggattgttagaactctcggagtagtaagtcatatgag 12832  T
Q  422 atatatgtgtagttgagttgtatgtagatatacacaggtt 461  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  12833 atatatgtgtagttgagttgtatgtagatatacacaggtt 12872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 16 - 111
Target Start/End: Original strand, 12437 - 12543
Alignment:
Q  16 cctgtgagcgaaaaaccgttttgattctgttagaagttcgctca-----------agcgaaccctaagcgagcagaacccagaccttctgtaagccggtc 104  Q
    ||||||||||||||||| |||||||||||| |||||||||||||           |||||||| ||||||||| |||||||||||| |||||||||||||    
T  12437 cctgtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccagacctactgtaagccggtc 12536  T
Q  105 gcttaag 111  Q
    |||||||    
T  12537 gcttaag 12543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0634 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: scaffold0634
Description:

Target: scaffold0634; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 51 - 461
Target Start/End: Complemental strand, 3156 - 2747
Alignment:
Q  51 gttcgctcaagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcag 150  Q
    ||||||||||||||||  | |||||||  ||||||||||| |||||||||||||||||||| |||||| | |||||||||||||||||||||||||||||    
T  3156 gttcgctcaagcgaactgtgagcgagcgaaacccagacctactgtaagccggtcgcttaagcgaactagccgtcgcttaagcgaagtgagccttagtcag 3057  T
Q  151 cctctttttgaatttttgcttcgtgcacgaggggacttcttgagcattctaaaatgtttcctttaacttgtataacccttgtataggtatcagaatccta 250  Q
    ||||||| |||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| |    
T  3056 cctctttctgaacttttgcttcgtgcacgaggggacttcttgagcattctaaaatatttcctttaacttgtataacccttgtataggtaccagaatccca 2957  T
Q  251 ctagaacaagctggtgatcgaattggttgatgttagtgaatttttgagatgattgagtatgaaatcaagtgaatatataatttattgaatgaaattgatg 350  Q
    ||||||||||| ||||||||||||||||||||||||||||| || ||||||||||||| |||||||| |||||||||||| |||||||||||| ||||||    
T  2956 ctagaacaagccggtgatcgaattggttgatgttagtgaatattggagatgattgagtttgaaatcatgtgaatatataa-ttattgaatgaatttgatg 2858  T
Q  351 tatgtgcataattataattaattgtgtatgttctggattgttagaattttcggagtagtaagtcatatgaaatatatgt-gtagttgagttgtatgtaga 449  Q
    |||| |||||||||||| ||||||| |||||||||||||||| | | || |||||||||||||||||||||| ||||||  |||||||||||||||||||    
T  2857 tatgcgcataattataaataattgtctatgttctggattgtttg-agttgcggagtagtaagtcatatgaaacatatgtattagttgagttgtatgtaga 2759  T
Q  450 tatacacaggtt 461  Q
    ||||||||||||    
T  2758 tatacacaggtt 2747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 192; Significance: 1e-104; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 19 - 461
Target Start/End: Complemental strand, 26583313 - 26582856
Alignment:
Q  19 gtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaaccct-----------aagcgagcagaacccagaccttctgtaagccggtcgct 107  Q
    |||||||||||||| |||||||||||| ||||||||||||||||||||| |           |||||||| |||||||||||| ||||||||||||||||    
T  26583313 gtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcgacccgtaagcgagctgaacccagacctactgtaagccggtcgct 26583214  T
Q  108 taagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggacttcttgagcattctaaaatgt 207  Q
    |||| |||||| | |||||||||||||||| || ||||||||||||  || |||| ||||| |||||||| ||||||||||||||||||||||| ||| |    
T  26583213 taagcgaactagccgtcgcttaagcgaagtaagtcttagtcagccttcttctgaacttttgtttcgtgcaggaggggacttcttgagcattctataatat 26583114  T
Q  208 ttcctttaacttgtataacccttgtataggtatcagaatcctactagaacaagctggtgatcgaattggttgatgttagtgaatttttgagatgattgag 307  Q
    ||| ||||||| |||||||||| || |||||| | || ||||| |||||| ||| ||||||||||||| ||| ||||||| ||| || ||||||||||||    
T  26583113 ttcttttaactagtataaccctggtgtaggtaaccgactcctattagaactagccggtgatcgaattgattggtgttagtaaatgttggagatgattgag 26583014  T
Q  308 tatgaaatcaagtgaatat----ataatttattgaatgaaattgatgtatgtgcataattataattaattgtgtatgttctggattgttagaattttcgg 403  Q
    ||||||||| |||||||||    ||||  | | |||||  ||||||||||| |||||||||||| |||||||||||||||||||||||| | | || |||    
T  26583013 tatgaaatcgagtgaatatatacataacatgtggaatgtgattgatgtatgcgcataattataaataattgtgtatgttctggattgtttg-agttgcgg 26582915  T
Q  404 agtagtaagtcatatgaaatatatgt-gtagttgagttgtatgtagatatacacaggtt 461  Q
    ||||||||||||||| ||| ||||||  ||||| |||||||||||||||||||||||||    
T  26582914 agtagtaagtcatataaaacatatgtaatagttaagttgtatgtagatatacacaggtt 26582856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 123 - 461
Target Start/End: Original strand, 23168954 - 23169294
Alignment:
Q  123 tcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggact-tcttgagcattctaaaatgtttcctttaacttgt 221  Q
    ||||||||||||  |||| |||||||||||||||| ||||  || | |||||| || |||||||  | ||| | ||||||||||||||| || |||||||    
T  23168954 tcgcttaagcgagctgaggcttagtcagcctctttctgaaaatt-gtttcgtgtactaggggacccttttgggtattctaaaatgtttctttcaacttgt 23169052  T
Q  222 ataacccttgtataggtatcagaatcctactagaacaagctggtgatcgaattggttgatgttagtgaatttttgagatgattgagtatgaaatcaagtg 321  Q
    ||||||||||||||||||| || ||||||||||||||  |||||||||| |||||||||||||| |||||||| |||||| ||||||||||||||| |||    
T  23169053 ataacccttgtataggtattaggatcctactagaacactctggtgatcgcattggttgatgttaatgaattttggagatgtttgagtatgaaatcatgtg 23169152  T
Q  322 aat--atataatttattgaatgaaattgatgtatgtgcataattataattaattgtgtatgttctggattgttagaattttcggagtagtaagtcatatg 419  Q
    |||  ||||||  | | |||||  | ||||||||| |||||||||||| | ||||||||||| |||||||||| | | || ||||||||||||| |||||    
T  23169153 aatgtatataacatgtggaatgtgaatgatgtatgcgcataattataaatgattgtgtatgtgctggattgtttg-agttgcggagtagtaagttatatg 23169251  T
Q  420 aaatatatgt-gtagttgagttgtatgtagatatacacaggtt 461  Q
    ||||||||||  |||| ||||||||||| ||||||||| ||||    
T  23169252 aaatatatgtattagtggagttgtatgtggatatacacgggtt 23169294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 123 - 461
Target Start/End: Original strand, 23580211 - 23580551
Alignment:
Q  123 tcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggact-tcttgagcattctaaaatgtttcctttaacttgt 221  Q
    ||||||||||||  |||| |||||||||||||||| ||||  || | |||||| || |||||||  | ||| | ||||||||||||||| || |||||||    
T  23580211 tcgcttaagcgagctgaggcttagtcagcctctttctgaaaatt-gtttcgtgtactaggggacccttttgggtattctaaaatgtttctttcaacttgt 23580309  T
Q  222 ataacccttgtataggtatcagaatcctactagaacaagctggtgatcgaattggttgatgttagtgaatttttgagatgattgagtatgaaatcaagtg 321  Q
    ||||||||||||||||||| || ||||||||||||||  |||||||||| |||||||||||||| |||||||| |||||| ||||||||||||||| |||    
T  23580310 ataacccttgtataggtattaggatcctactagaacactctggtgatcgcattggttgatgttaatgaattttggagatgtttgagtatgaaatcatgtg 23580409  T
Q  322 aat--atataatttattgaatgaaattgatgtatgtgcataattataattaattgtgtatgttctggattgttagaattttcggagtagtaagtcatatg 419  Q
    |||  ||||||  | | |||||  | ||||||||| |||||||||||| | ||||||||||| |||||||||| | | || ||||||||||||| |||||    
T  23580410 aatgtatataacatgtggaatgtgaatgatgtatgcgcataattataaatgattgtgtatgtgctggattgtttg-agttgcggagtagtaagttatatg 23580508  T
Q  420 aaatatatgt-gtagttgagttgtatgtagatatacacaggtt 461  Q
    ||||||||||  |||| ||||||||||| ||||||||| ||||    
T  23580509 aaatatatgtattagtggagttgtatgtggatatacacgggtt 23580551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 50 - 235
Target Start/End: Original strand, 23089594 - 23089779
Alignment:
Q  50 agttcgctcaagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtca 149  Q
    |||||||||||||||||| |||||||||||||||||||| | |||||||||||||||||||| |||||    ||||||||||||||||   |||||||||    
T  23089594 agttcgctcaagcgaaccgtaagcgagcagaacccagacttactgtaagccggtcgcttaagcgaactggacgtcgcttaagcgaagttgaccttagtca 23089693  T
Q  150 gcctctttttgaatttttgcttcgtgcacgaggggacttc-ttgagcattctaaaatgtttcctttaacttgtataacccttgtata 235  Q
    ||| |||||||||   |||| |||||||  ||| |||  | |||||||||  || ||| |||||| |||||||||||||||| ||||    
T  23089694 gccactttttgaa-cgttgcctcgtgcattaggagacccctttgagcattgaaacatggttccttcaacttgtataacccttatata 23089779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 91 - 350
Target Start/End: Complemental strand, 23063127 - 23062869
Alignment:
Q  91 tctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttc 189  Q
    ||||||||||||||||||||| |||| | | ||||||||||||||||   |||||||||||| |||||||||  ||||| |||||||  |||||| | |     
T  23063127 tctgtaagccggtcgcttaagcgaaccagccgtcgcttaagcgaagttgaccttagtcagccactttttgaa-ctttgcctcgtgcattaggggatcctt 23063029  T
Q  190 ttgagcattctaaaatgtttcctttaacttgtataacccttgtataggtatcagaatcctact-agaacaagctggtgatcgaattggttgatgttagtg 288  Q
    |||||||||  |||||||||| || |||||||||||||||| ||||   | | |||||||||| | ||||   |||| |||||||| |||||  ||||||    
T  23063028 ttgagcatttaaaaatgtttctttcaacttgtataacccttatatataca-ctgaatcctactgaaaacactttggtaatcgaattagttgagtttagtg 23062930  T
Q  289 aatttttgagatgattgagtatgaaatcaagtgaatatataatttattgaatgaaattgatg 350  Q
    || ||| ||||||||||||||||||| | |||||| ||||| | | ||||||||| ||||||    
T  23062929 aa-tttggagatgattgagtatgaaacctagtgaacatatactatgttgaatgaacttgatg 23062869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 22 - 235
Target Start/End: Original strand, 23101994 - 23102207
Alignment:
Q  22 agcgaaaaaccgttttgattctgttagaagttcgctcaagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatct 121  Q
    |||||||||||  ||||||||||  |  |||||||| ||||||||| |||||||||||||||||||| | |||||||||| || |||||| |||||        
T  23101994 agcgaaaaaccaatttgattctgccaagagttcgcttaagcgaaccgtaagcgagcagaacccagacttactgtaagccgatcacttaagcgaactggac 23102093  T
Q  122 gtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggacttc-ttgagcattctaaaatgtttcctttaacttg 220  Q
    ||||||||||||||||   |||||||||||| |||||||||   |||| |||||||  ||| |||  | |||||||||  || ||| |||||| ||||||    
T  23102094 gtcgcttaagcgaagttgaccttagtcagccactttttgaa-cgttgcctcgtgcattaggagacccctttgagcattgaaacatggttccttcaacttg 23102192  T
Q  221 tataacccttgtata 235  Q
    |||||||||| ||||    
T  23102193 tataacccttatata 23102207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 58 - 158
Target Start/End: Complemental strand, 23878425 - 23878325
Alignment:
Q  58 caagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaag-tgagccttagtcagcctctt 156  Q
    |||||||||| |||||||||||||||||||| | |||||||||||||||||||| |||||| | ||||||||||||||| ||| |||||||||||| |||    
T  23878425 caagcgaaccgtaagcgagcagaacccagacttactgtaagccggtcgcttaagcgaactagccgtcgcttaagcgaagatga-ccttagtcagccactt 23878327  T
Q  157 tt 158  Q
    ||    
T  23878326 tt 23878325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 47 - 162
Target Start/End: Complemental strand, 21907865 - 21907750
Alignment:
Q  47 agaagttcgctcaagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaag-tgagcctta 145  Q
    ||||||||||| ||||||||| | ||||||| ||||||  || |||||||||||||||||||||| |||||| |  |||||||||||||| ||| |||||    
T  21907865 agaagttcgcttaagcgaaccgttagcgagcggaaccccaactttctgtaagccggtcgcttaagcgaactagccatcgcttaagcgaagatga-cctta 21907767  T
Q  146 gtcagcctctttttgaa 162  Q
    ||||||| |||||||||    
T  21907766 gtcagccactttttgaa 21907750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 101 - 252
Target Start/End: Complemental strand, 26884639 - 26884489
Alignment:
Q  101 ggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagcattc 199  Q
    ||||||||||| || ||| |  ||||||||||||| ||||||||||||||||||||| ||||   ||||||||||||| |||||| | | ||||| |||     
T  26884639 ggtcgcttaagcgagctacccttcgcttaagcgaactgagccttagtcagcctctttctgaa-ccttgcttcgtgcactaggggacccttttgagtattt 26884541  T
Q  200 taaaatgtttcctttaacttgtataacccttgtataggtatcagaatcctact 252  Q
    | ||||||||| |||| |||||||||| |||||||||| |||| |||||||||    
T  26884540 ttaaatgtttcttttagcttgtataactcttgtataggcatca-aatcctact 26884489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 90 - 235
Target Start/End: Complemental strand, 24661021 - 24660876
Alignment:
Q  90 ttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-ctt 188  Q
    |||||| ||||||||||||||| || | | | ||||||||||| |||   | ||||||||||| |||||||||||||  |||||||||| |||||| | |    
T  24661021 ttctgtgagccggtcgcttaagcgagccagccgtcgcttaagcaaagaaggtcttagtcagccactttttgaatttta-cttcgtgcactaggggatcct 24660923  T
Q  189 cttgagcattctaaaatgtttcctttaacttgtataacccttgtata 235  Q
     ||||||||| ||||||||||| || ||||||||||||| |||||||    
T  24660922 tttgagcattttaaaatgtttctttcaacttgtataacctttgtata 24660876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 16 - 153
Target Start/End: Original strand, 5706610 - 5706759
Alignment:
Q  16 cctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaaccct-----------aagcgagcagaacccaga-ccttctgtaagccggt 103  Q
    ||||||||||||||||| ||||||||||||   ||||||||||||||||||| |           |||||| | || |||||| ||| |||||||| |||    
T  5706610 cctgtgagcgaaaaaccattttgattctgtccaaagttcgctcaagcgaaccgtgagcgacccgtaagcgaactgagcccagagcctactgtaagctggt 5706709  T
Q  104 cgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcct 153  Q
    |||||||| |||||| | |||||||||||||||||| |||||||||||||    
T  5706710 cgcttaagcgaactagccgtcgcttaagcgaagtgaaccttagtcagcct 5706759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 60 - 162
Target Start/End: Complemental strand, 29281470 - 29281368
Alignment:
Q  60 agcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctcttttt 159  Q
    ||||| || ||||||| | |||||||||||| |||||||| ||||||||||| |||||| | |||||||||||||| ||||  ||||||||||| ||| |    
T  29281470 agcgacccgtaagcgaactgaacccagacctactgtaagctggtcgcttaagcgaactagccgtcgcttaagcgaactgagtgttagtcagcctttttct 29281371  T
Q  160 gaa 162  Q
    |||    
T  29281370 gaa 29281368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 79 - 186
Target Start/End: Original strand, 25181501 - 25181606
Alignment:
Q  79 gaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcac 178  Q
    |||||||||||| |||||||| |||||||||||  ||||| | |||||||||||||| ||||  ||||||||||| ||| |||| | |||||||||||||    
T  25181501 gaacccagacctactgtaagctggtcgcttaagcaaactagccgtcgcttaagcgaactgagtgttagtcagcct-tttctgaa-tcttgcttcgtgcac 25181598  T
Q  179 gaggggac 186  Q
     |||||||    
T  25181599 taggggac 25181606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 13 - 111
Target Start/End: Complemental strand, 23264613 - 23264515
Alignment:
Q  13 gaacctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaag 111  Q
    ||||| || ||||||||| | |||| ||| ||| ||||||||||||||||||||| | |||||||  ||||| |||  |||||||||||||||||||||    
T  23264613 gaacccgtaagcgaaaaatcattttcattatgtcagaagttcgctcaagcgaaccgttagcgagcgaaaccccgactctctgtaagccggtcgcttaag 23264515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 60 - 153
Target Start/End: Complemental strand, 10050 - 9957
Alignment:
Q  60 agcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcct 153  Q
    ||||| || ||||||| | |||||||||||| |||||||| ||||||||||| |||||| | ||||||||||| || ||||  |||| ||||||    
T  10050 agcgacccgtaagcgaactgaacccagacctactgtaagctggtcgcttaagcgaactagccgtcgcttaagcaaactgagtgttagacagcct 9957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 122 - 350
Target Start/End: Complemental strand, 23264524 - 23264301
Alignment:
Q  122 gtcgcttaagcgaag-tgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagcattctaaaatgtttcctttaactt 219  Q
    ||||||||||||||| ||| |||||||||||| ||||||||| ||| || |||||||| |||||| | | ||||||||| | ||||||| | || |||||    
T  23264524 gtcgcttaagcgaagatga-ccttagtcagccactttttgaacttt-gcctcgtgcactaggggatccttttgagcatttttaaatgttcctttcaactt 23264427  T
Q  220 gtataacccttgtataggtatcagaatcctactagaacaagctggtgatcgaattggttgatgttagtgaatttttgagatgattgagtatgaaatcaag 319  Q
    |||||||| || ||||     |  |||||||| | ||||   |||| |||||||| |||||  |||||||| ||| |||||||| |||||||||| ||||    
T  23264426 gtataacctttatataca---ctaaatcctaccaaaacact-tggtaatcgaattagttgagtttagtgaa-tttggagatgatcgagtatgaaaccaag 23264332  T
Q  320 tgaatatataatttattgaatgaaattgatg 350  Q
    |||| ||||| | | ||||||||| ||||||    
T  23264331 tgaacatatactatgttgaatgaacttgatg 23264301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 90 - 162
Target Start/End: Original strand, 27208322 - 27208394
Alignment:
Q  90 ttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaa 162  Q
    |||||| ||| ||||||||||| || ||| |  ||||||||||||| ||||||||||||||||| ||| ||||    
T  27208322 ttctgtgagctggtcgcttaagcgagctacccttcgcttaagcgaactgagccttagtcagcctttttctgaa 27208394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 90 - 162
Target Start/End: Original strand, 27210657 - 27210729
Alignment:
Q  90 ttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaa 162  Q
    |||||| ||| ||||||||||| || ||| |  ||||||||||||| ||||||||||||||||| ||| ||||    
T  27210657 ttctgtgagctggtcgcttaagcgagctacccttcgcttaagcgaactgagccttagtcagcctttttctgaa 27210729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 429 - 460
Target Start/End: Complemental strand, 20261036 - 20261005
Alignment:
Q  429 tgtagttgagttgtatgtagatatacacaggt 460  Q
    ||||||||||||||||||||||||||||||||    
T  20261036 tgtagttgagttgtatgtagatatacacaggt 20261005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 408 - 457
Target Start/End: Original strand, 20914272 - 20914321
Alignment:
Q  408 gtaagtcatatgaaatatatgtgtagttgagttgtatgtagatatacaca 457  Q
    ||||||||||| | |||||||  | |||||||||||||||||||||||||    
T  20914272 gtaagtcatattatatatatgcattgttgagttgtatgtagatatacaca 20914321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 433 - 461
Target Start/End: Complemental strand, 200850 - 200822
Alignment:
Q  433 gttgagttgtatgtagatatacacaggtt 461  Q
    |||||||||||||||||||||||||||||    
T  200850 gttgagttgtatgtagatatacacaggtt 200822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 433 - 461
Target Start/End: Original strand, 6744292 - 6744320
Alignment:
Q  433 gttgagttgtatgtagatatacacaggtt 461  Q
    |||||||||||||||||||||||||||||    
T  6744292 gttgagttgtatgtagatatacacaggtt 6744320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 433 - 461
Target Start/End: Original strand, 27367551 - 27367579
Alignment:
Q  433 gttgagttgtatgtagatatacacaggtt 461  Q
    |||||||||||||||||||||||||||||    
T  27367551 gttgagttgtatgtagatatacacaggtt 27367579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 179; Significance: 2e-96; HSPs: 28)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 19 - 461
Target Start/End: Original strand, 29614738 - 29615195
Alignment:
Q  19 gtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaaccct-----------aagcgagcagaacccagaccttctgtaagccggtcgct 107  Q
    |||||||||||||| |||||||||||| ||||||||||||||||||||| |           |||||||| |||||||||||| ||||||| ||||||||    
T  29614738 gtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcaacccgtaagcgagctgaacccagacctactgtaagtcggtcgct 29614837  T
Q  108 taagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggacttcttgagcattctaaaatgt 207  Q
    |||| |||||| | ||||||||||||||||||||||||||||||||   | |||| ||||| |||||||| ||||| ||||||||||||||||| ||| |    
T  29614838 taagcgaactagccgtcgcttaagcgaagtgagccttagtcagcct---tctgaacttttgtttcgtgcatgagggaacttcttgagcattctataatat 29614934  T
Q  208 ttcctttaacttgtataacccttgtataggtatcagaatcctactagaacaagctggtgatcgaattggttgatgttagtgaatttttgagatgattgag 307  Q
    ||||||||||| |||||||||| | ||||||| ||||||| || |||||| ||| |||||| |||||| ||| ||||||| ||| || ||||||||||||    
T  29614935 ttcctttaactagtataaccctggcataggtaacagaatcttattagaacgagccggtgattgaattgattggtgttagtaaatgttggagatgattgag 29615034  T
Q  308 tatgaaatcaagtga--------atatataatttattgaatgaaattgatgtatgtgcataattataattaattgtgtatgttctggattgttagaattt 399  Q
    ||||||| |||||||        ||||||||  | | |||||  ||||||||||||| |||||||||| ||||||||||||||||||||||||   | ||    
T  29615035 tatgaaaacaagtgaatatgtgtatatataacatgtggaatgtgattgatgtatgtgaataattataaataattgtgtatgttctggattgtt--gagtt 29615132  T
Q  400 tcggagtagtaagtcatatgaaatatatgt-gtagttgagttgtatgtagatatacacaggtt 461  Q
     ||||| |||||||||||||||| ||||||  |||| ||||||||||||||||||||||||||    
T  29615133 gcggagcagtaagtcatatgaaacatatgtaatagtcgagttgtatgtagatatacacaggtt 29615195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 47 - 376
Target Start/End: Complemental strand, 25396671 - 25396343
Alignment:
Q  47 agaagttcgctcaagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttag 146  Q
    |||||||| || ||||||||| | ||||||| ||||||  ||  |||||||| |||||||||||| || | | | ||||||||||||||||  | |||||    
T  25396671 agaagttcacttaagcgaaccgttagcgagcggaaccccaactctctgtaagtcggtcgcttaagcgagccagccgtcgcttaagcgaagtaggtcttag 25396572  T
Q  147 tcagcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagcattctaaaatgtttcctttaacttgtataacccttgtataggtatcagaa 245  Q
    ||| || ||||||||||| | |||| |||||| |||| | | | ||||||||||||||||||||| || ||||||||||||||||||||| | | | |||    
T  25396571 tcaaccactttttgaattat-gcttagtgcactagggaatccttttgagcattctaaaatgtttctttcaacttgtataacccttgtatatgca-ctgaa 25396474  T
Q  246 tcctactagaacaagctggtgatcgaattggttgatgttagtgaatttttgagatgattgagtatgaaatcaagtgaatatataatttattgaatgaaat 345  Q
    |||||||  ||||   |||| ||||||||||||||  |||||||||||| || |||||||||||||||| |||||||||||||| |   ||||||||| |    
T  25396473 tcctactgaaacacattggtaatcgaattggttgaatttagtgaattttggatatgattgagtatgaaaccaagtgaatatatactaggttgaatgaact 25396374  T
Q  346 tgatgtatgtgcataattataattaattgtg 376  Q
    ||||| ||  | || ||||| ||||||||||    
T  25396373 tgatgcattagtatgattattattaattgtg 25396343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 52 - 230
Target Start/End: Complemental strand, 18799932 - 18799754
Alignment:
Q  52 ttcgctcaagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagc 151  Q
    |||||| ||||||||| ||||||||| |||||||||| | |||||||||||||||||||| |||||| | |||||||||||||||| | |||||||||||    
T  18799932 ttcgcttaagcgaaccgtaagcgagcggaacccagacttactgtaagccggtcgcttaagcgaactagccgtcgcttaagcgaagtcaaccttagtcagc 18799833  T
Q  152 ctctttttgaatttttgcttcgtgcacgagggga-cttcttgagcattctaaaatgtttcctttaacttgtataaccctt 230  Q
    | |||||||||  ||||| || ||||  |||||| | | || ||||||| || ||||| | || ||||||||||||||||    
T  18799832 cactttttgaa-ctttgcctcatgcattaggggaccctttttagcattcaaacatgttcctttcaacttgtataaccctt 18799754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 50 - 235
Target Start/End: Original strand, 21565751 - 21565936
Alignment:
Q  50 agttcgctcaagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtca 149  Q
    |||||||||||||||||| |||||||||||||||||||| | |||||||||||||||||||| |||||    ||||||||||||||||   |||||||||    
T  21565751 agttcgctcaagcgaaccgtaagcgagcagaacccagacttactgtaagccggtcgcttaagcgaactggacgtcgcttaagcgaagttgaccttagtca 21565850  T
Q  150 gcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagcattctaaaatgtttcctttaacttgtataacccttgtata 235  Q
    ||| |||||||||   |||| |||||||  ||| || | | |||||||||  || ||| |||||| |||||||||||||||| ||||    
T  21565851 gccactttttgaa-cgttgcctcgtgcattaggagacccttttgagcattgaaacatggttccttcaacttgtataacccttatata 21565936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 344 - 460
Target Start/End: Original strand, 19786751 - 19786866
Alignment:
Q  344 attgatgtatgtgcataattataattaattgtgtatgttctggattgttagaattttcggagtagtaagtcatatgaaatatatgt-gtagttgagttgt 442  Q
    |||||||||||||||||||||||| |||||||||| | ||||||||||| || || | ||||||||||||||||||| | |||||| ||||| |||||||    
T  19786751 attgatgtatgtgcataattataaataattgtgtaag-tctggattgtttgagttat-ggagtagtaagtcatatgatacatatgtagtagtcgagttgt 19786848  T
Q  443 atgtagatatacacaggt 460  Q
    ||||||||||||||||||    
T  19786849 atgtagatatacacaggt 19786866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 16 - 200
Target Start/End: Complemental strand, 12167832 - 12167637
Alignment:
Q  16 cctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaaccct-----------aagcgagcagaacccaga-ccttctgtaagccggt 103  Q
    ||||||||||||||||| |||| |||||||   ||||||||||||||||||| |           |||||| | ||||||||| ||| |||||||| |||    
T  12167832 cctgtgagcgaaaaaccattttcattctgtccaaagttcgctcaagcgaaccgtgagcgacccgtaagcgaactgaacccagaacctactgtaagctggt 12167733  T
Q  104 cgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggacttcttgagcattct 200  Q
    |||||||| |||||| | |||||||||||||||||| ||||| ||||||| ||| |||| | |||||| ||||| ||||||||||||||||| ||||    
T  12167732 cgcttaagcgaactagccgtcgcttaagcgaagtgaaccttaatcagcct-tttctgaactgttgcttagtgcatgaggggacttcttgagcgttct 12167637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 16 - 200
Target Start/End: Complemental strand, 19286741 - 19286546
Alignment:
Q  16 cctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaaccct-----------aagcgagcagaacccaga-ccttctgtaagccggt 103  Q
    ||||||||||||||||| |||| |||||||   ||||||||||||||||||| |           |||||| | ||||||||| ||| |||||||| |||    
T  19286741 cctgtgagcgaaaaaccattttcattctgtccaaagttcgctcaagcgaaccgtgagcgacccgtaagcgaactgaacccagaacctactgtaagctggt 19286642  T
Q  104 cgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggacttcttgagcattct 200  Q
    |||||||| |||||| | |||||||||||||||||| ||||| ||||||| ||| |||| | |||||| ||||| ||||||||||||||||| ||||    
T  19286641 cgcttaagcgaactagccgtcgcttaagcgaagtgaaccttaatcagcct-tttctgaactgttgcttagtgcatgaggggacttcttgagcgttct 19286546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 344 - 460
Target Start/End: Complemental strand, 12167535 - 12167420
Alignment:
Q  344 attgatgtatgtgcataattataattaattgtgtatgttctggattgttagaattttcggagtagtaagtcatatgaaatatatgt-gtagttgagttgt 442  Q
    |||||||||||||||||||||||| |||||||||| | ||||||||||| || || | ||||||||||||||||||| | |||||| || || |||||||    
T  12167535 attgatgtatgtgcataattataaataattgtgtaag-tctggattgtttgagttgt-ggagtagtaagtcatatgatacatatgtagtggtcgagttgt 12167438  T
Q  443 atgtagatatacacaggt 460  Q
    ||||||||||||||||||    
T  12167437 atgtagatatacacaggt 12167420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 344 - 460
Target Start/End: Complemental strand, 19877628 - 19877513
Alignment:
Q  344 attgatgtatgtgcataattataattaattgtgtatgttctggattgttagaattttcggagtagtaagtcatatgaaatatatgt-gtagttgagttgt 442  Q
    |||||||||||||||||||||||| |||||||||| | ||||||||||| || || | ||||||||||||||||||| | |||||| || || |||||||    
T  19877628 attgatgtatgtgcataattataaataattgtgtaag-tctggattgtttgagttgt-ggagtagtaagtcatatgatacatatgtagtggtcgagttgt 19877531  T
Q  443 atgtagatatacacaggt 460  Q
    ||||||||||||||||||    
T  19877530 atgtagatatacacaggt 19877513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 60 - 200
Target Start/End: Complemental strand, 19877870 - 19877730
Alignment:
Q  60 agcgaaccctaagcgagcagaacccaga-ccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttt 158  Q
    ||||| || ||||||| | ||||||||| ||| |||||||| ||||||||||| |||||| | |||||||||||||||||| ||||| ||||||| |||     
T  19877870 agcgacccgtaagcgaactgaacccagaacctactgtaagctggtcgcttaagcgaactagccgtcgcttaagcgaagtgaaccttaatcagcct-tttc 19877772  T
Q  159 tgaatttttgcttcgtgcacgaggggacttcttgagcattct 200  Q
    |||| | |||||| ||||| ||||||||||||||||| ||||    
T  19877771 tgaactgttgcttagtgcatgaggggacttcttgagcgttct 19877730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 344 - 460
Target Start/End: Complemental strand, 19883404 - 19883289
Alignment:
Q  344 attgatgtatgtgcataattataattaattgtgtatgttctggattgttagaattttcggagtagtaagtcatatgaaatatatgt-gtagttgagttgt 442  Q
    |||||||||||||||||||||||| |||||||||| | ||||||||||| || || | ||||||||||||||||||| | |||||| || || |||||||    
T  19883404 attgatgtatgtgcataattataaataattgtgtaag-tctggattgtttgagttgt-ggagtagtaagtcatatgatacatatgtagtggtcgagttgt 19883307  T
Q  443 atgtagatatacacaggt 460  Q
    ||||||||||||||||||    
T  19883306 atgtagatatacacaggt 19883289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 16 - 200
Target Start/End: Complemental strand, 19883701 - 19883506
Alignment:
Q  16 cctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaaccct-----------aagcgagcagaacccaga-ccttctgtaagccggt 103  Q
    ||||||||||||||||| |||| |||||||   ||||||||||||||||||| |           |||||| | ||||||||| ||| |||||||| |||    
T  19883701 cctgtgagcgaaaaaccattttcattctgtccaaagttcgctcaagcgaaccgtgagcgacccgtaagcgaactgaacccagaacctactgtaagctggt 19883602  T
Q  104 cgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggacttcttgagcattct 200  Q
    |||||||| |||||| | |||||||||||||||||| ||||| | ||||| ||| |||| | |||||| ||||| ||||||||||||||||| ||||    
T  19883601 cgcttaagcgaactagccgtcgcttaagcgaagtgaaccttaattagcct-tttctgaactgttgcttagtgcatgaggggacttcttgagcgttct 19883506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 344 - 460
Target Start/End: Complemental strand, 19286444 - 19286329
Alignment:
Q  344 attgatgtatgtgcataattataattaattgtgtatgttctggattgttagaattttcggagtagtaagtcatatgaaatatatgt-gtagttgagttgt 442  Q
    |||||||||||||||||||||||| |||||||||| | ||||||||||| || || | ||||||||||||||||| | | |||||| || || |||||||    
T  19286444 attgatgtatgtgcataattataaataattgtgtaag-tctggattgtttgagttgt-ggagtagtaagtcatattatacatatgtagtggtcgagttgt 19286347  T
Q  443 atgtagatatacacaggt 460  Q
    ||||||||||||||||||    
T  19286346 atgtagatatacacaggt 19286329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 50 - 252
Target Start/End: Original strand, 19300308 - 19300509
Alignment:
Q  50 agttcgctcaagcgaaccctaagcgagc-agaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtc 148  Q
    ||||||||| |||||||| | ||||||| |||| ||| || | ||||| || ||||||||||| || ||| |  ||||||||||||  ||||||||||||    
T  19300308 agttcgctcgagcgaaccgtgagcgagcgagaatccaaacttcctgta-gctggtcgcttaagcgagctacccttcgcttaagcgagatgagccttagtc 19300406  T
Q  149 agcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagcattctaaaatgtttcctttaacttgtataacccttgtataggtatcagaatc 247  Q
    ||||||| | ||||  |||||||||||||| |||||| | | ||||| ||| | || |||||| |||| ||||||||||||||||||||| |||| ||||    
T  19300407 agcctctatctgaa-ctttgcttcgtgcactaggggacccttttgagtatttttaagtgtttcttttagcttgtataacccttgtataggcatca-aatc 19300504  T
Q  248 ctact 252  Q
    |||||    
T  19300505 ctact 19300509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 79 - 200
Target Start/End: Original strand, 19786529 - 19786650
Alignment:
Q  79 gaacccaga-ccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgca 177  Q
    ||||||||| ||| |||||||| ||||||||||| |||||| | |||||||||||||||||| ||||| ||||||| ||| |||| | ||||||  ||||    
T  19786529 gaacccagaacctactgtaagctggtcgcttaagcgaactagccgtcgcttaagcgaagtgaaccttaatcagcct-tttctgaactgttgcttaatgca 19786627  T
Q  178 cgaggggacttcttgagcattct 200  Q
     ||||||||||||||||| ||||    
T  19786628 tgaggggacttcttgagcgttct 19786650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 16 - 153
Target Start/End: Original strand, 34640575 - 34640724
Alignment:
Q  16 cctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaaccct-----------aagcgagcagaacccaga-ccttctgtaagccggt 103  Q
    ||||||||||||||||| ||||||||||||   ||||||||||||||||||| |           |||||| | || |||||| ||| |||||||| |||    
T  34640575 cctgtgagcgaaaaaccattttgattctgtccaaagttcgctcaagcgaaccgtgagcgacccgtaagcgaactgagcccagagcctactgtaagctggt 34640674  T
Q  104 cgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcct 153  Q
    |||||||| |||||| | |||||||||||||||||| |||||||||||||    
T  34640675 cgcttaagcgaactagccgtcgcttaagcgaagtgaaccttagtcagcct 34640724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 16 - 153
Target Start/End: Original strand, 34647249 - 34647398
Alignment:
Q  16 cctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaaccct-----------aagcgagcagaacccaga-ccttctgtaagccggt 103  Q
    ||||||||||||||||| ||||||||||||   ||||||||||||||||||| |           |||||| | || |||||| ||| |||||||| |||    
T  34647249 cctgtgagcgaaaaaccattttgattctgtccaaagttcgctcaagcgaaccgtgagcgacccgtaagcgaactgagcccagagcctactgtaagctggt 34647348  T
Q  104 cgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcct 153  Q
    |||||||| |||||| | |||||||||||||||||| |||||||||||||    
T  34647349 cgcttaagcgaactagccgtcgcttaagcgaagtgaaccttagtcagcct 34647398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 58 - 227
Target Start/End: Original strand, 19471914 - 19472082
Alignment:
Q  58 caagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctcttt 157  Q
    ||||||| || | ||||||| ||||||  || |||||| ||||||||||||||| || | | |  ||||||||||||||   | ||| ||||||| ||||    
T  19471914 caagcgagccgttagcgagcggaaccccaactttctgtgagccggtcgcttaagcgagccagccatcgcttaagcgaagaaggtctt-gtcagccacttt 19472012  T
Q  158 ttgaatttttgcttcgtgcacgagggga-cttcttgagcattctaaaatgtttcctttaacttgtataacc 227  Q
    ||||||||| ||||||||||| |||||| | | ||||||||| | |||||||||||| |||||||||||||    
T  19472013 ttgaatttt-gcttcgtgcactaggggatccttttgagcattttgaaatgtttccttcaacttgtataacc 19472082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 16 - 111
Target Start/End: Original strand, 24513370 - 24513465
Alignment:
Q  16 cctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaag 111  Q
    ||||| ||||||||| | |||| |||||   ||||||||||||||||||||| | ||||||| ||||||| || |||||| |||||||||||||||    
T  24513370 cctgtaagcgaaaaatcattttcattcttccagaagttcgctcaagcgaaccgttagcgagcggaacccaaactttctgtgagccggtcgcttaag 24513465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 60 - 153
Target Start/End: Original strand, 20008529 - 20008622
Alignment:
Q  60 agcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcct 153  Q
    ||||| || ||||||| | |||||||||||| |||||||| ||||||||||| |||||| | || ||||||||||| ||||  |||| ||||||    
T  20008529 agcgacccgtaagcgaactgaacccagacctactgtaagctggtcgcttaagcgaactagccgttgcttaagcgaactgagtgttagacagcct 20008622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 16 - 162
Target Start/End: Original strand, 25470290 - 25470448
Alignment:
Q  16 cctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaaccct-----------aagcgagcagaacccaga-ccttctgtaagccggt 103  Q
    ||||||||||||||||| ||||||||||||   || |||||||||||||||| |           |||||| | || |||||| ||| |||||||  |||    
T  25470290 cctgtgagcgaaaaaccattttgattctgtccaaaattcgctcaagcgaaccgtgagcgacccgtaagcgaactgagcccagaacctactgtaagttggt 25470389  T
Q  104 cgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaa 162  Q
    |||||||| ||||||   |||||||||||||||||| ||||||||||||| ||| ||||    
T  25470390 cgcttaagcgaactagacgtcgcttaagcgaagtgaaccttagtcagcctttttctgaa 25470448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 140
Target Start/End: Original strand, 21365067 - 21365200
Alignment:
Q  18 tgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaa-----------ccctaagcgagcagaacccagaccttctgtaagccggtcgc 106  Q
    ||||||||||||||| ||||||||||||   |||||||||||||||||           || ||||||| | |||||||||||| |||||||  ||||||    
T  21365067 tgtgagcgaaaaaccattttgattctgtccaaagttcgctcaagcgaaccgtgagcgacccgtaagcgaactgaacccagacctactgtaagttggtcgc 21365166  T
Q  107 ttaagtgaactatctgtcgcttaagcgaagtgag 140  Q
    ||||| || ||| | |||||||||||||| ||||    
T  21365167 ttaagcgagctagccgtcgcttaagcgaactgag 21365200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 140
Target Start/End: Original strand, 23969049 - 23969182
Alignment:
Q  18 tgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaa-----------ccctaagcgagcagaacccagaccttctgtaagccggtcgc 106  Q
    ||||||||||||||| ||||||||||||   |||||||||||||||||           || ||||||| | |||||||||||| |||||||  ||||||    
T  23969049 tgtgagcgaaaaaccattttgattctgtccaaagttcgctcaagcgaaccgtgagcgacccgtaagcgaactgaacccagacctactgtaagttggtcgc 23969148  T
Q  107 ttaagtgaactatctgtcgcttaagcgaagtgag 140  Q
    ||||| || ||| | |||||||||||||| ||||    
T  23969149 ttaagcgagctagccgtcgcttaagcgaactgag 23969182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 429 - 460
Target Start/End: Complemental strand, 12942012 - 12941981
Alignment:
Q  429 tgtagttgagttgtatgtagatatacacaggt 460  Q
    ||||||||||||||||||||||||||||||||    
T  12942012 tgtagttgagttgtatgtagatatacacaggt 12941981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 67
Target Start/End: Original strand, 19786455 - 19786506
Alignment:
Q  16 cctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaacc 67  Q
    ||||||||||||||||| |||| |||||||   |||||||||||||||||||    
T  19786455 cctgtgagcgaaaaaccattttcattctgtccaaagttcgctcaagcgaacc 19786506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 67
Target Start/End: Complemental strand, 19877923 - 19877874
Alignment:
Q  18 tgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaacc 67  Q
    ||||||||||||||| |||| |||||||   |||||||||||||||||||    
T  19877923 tgtgagcgaaaaaccattttcattctgtccaaagttcgctcaagcgaacc 19877874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 122 - 185
Target Start/End: Complemental strand, 9186903 - 9186841
Alignment:
Q  122 gtcgcttaagcgaag-tgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga 185  Q
    ||||||||||||||| ||| |||||||||||| |||||||||  |||||||||||||| ||||||    
T  9186903 gtcgcttaagcgaagatga-ccttagtcagccactttttgaa-ctttgcttcgtgcactagggga 9186841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 433 - 461
Target Start/End: Complemental strand, 24562491 - 24562463
Alignment:
Q  433 gttgagttgtatgtagatatacacaggtt 461  Q
    |||||||||||||||||||||||||||||    
T  24562491 gttgagttgtatgtagatatacacaggtt 24562463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 164; Significance: 2e-87; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 60 - 460
Target Start/End: Original strand, 41455741 - 41456142
Alignment:
Q  60 agcgaaccctaagcgagcagaacccaga-ccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttt 158  Q
    ||||| || ||||||| | ||||||||| ||| |||||||| ||||||||||| |||||| | |||||||||||||||||| ||||||||||||| |||     
T  41455741 agcgacccgtaagcgaactgaacccagaacctactgtaagctggtcgcttaagcgaactagccgtcgcttaagcgaagtgaaccttagtcagcctttttc 41455840  T
Q  159 tgaatttttgcttcgtgcacgaggggacttcttgagcattctaaaatgtttcctttaacttgtataacccttgtataggtatcagaatcctactagaaca 258  Q
    |||| | |||||| ||||| ||||||||||| ||||| ||||  ||  |   ||||||||||||||| ||| ||||||||||||||||||||||||||||    
T  41455841 tgaactgttgcttagtgcatgaggggacttcctgagcgttctttaacttcctctttaacttgtataatcctagtataggtatcagaatcctactagaaca 41455940  T
Q  259 agctggtgatcgaattggttgatgttagtgaatttttgagatgattgagtatgaa-atcaagtgaatatataatttattgaatgaaattgatgtatgtgc 357  Q
    ||||||  ||||||||| ||| ||||||| ||| || ||||| |||||||| ||| || ||||||||||| ||  |||||||||||||||||||| | ||    
T  41455941 agctggcaatcgaattgattggtgttagtaaatgttggagataattgagtaggaagattaagtgaatatacaa-ctattgaatgaaattgatgtaagcgc 41456039  T
Q  358 ataattataattaattgtgtatgttctggattgttagaattttcggagtagtaagtcatatgaaatatatg-tgtagttgagttgtatgtagatatacac 456  Q
    |||||||||| |||||||| |||||||| |||||| | | || |||||||||||||||||||||| |||||   ||||||||||||||||||||||||||    
T  41456040 ataattataaataattgtgaatgttctgaattgtttg-agttacggagtagtaagtcatatgaaacatatgcattagttgagttgtatgtagatatacac 41456138  T
Q  457 aggt 460  Q
    ||||    
T  41456139 aggt 41456142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 58 - 457
Target Start/End: Complemental strand, 18914590 - 18914193
Alignment:
Q  58 caagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaag-tgagccttagtcagcctctt 156  Q
    |||||||||| | ||||||| ||||||  ||  ||| ||||||||||||||||| ||||   |  |||||||||||||| ||| |||||||||||| |||    
T  18914590 caagcgaacctttagcgagcggaaccccaactctctataagccggtcgcttaagcgaacctgccatcgcttaagcgaagatga-ccttagtcagccactt 18914492  T
Q  157 tttgaatttttgcttcgtgcacgagggga-cttcttgagcattctaaaatgtttcctttaacttgtataacccttgtataggtatcagaatcctactaga 255  Q
    || |||||||||| |||||||  |||||| | | ||||||||   | ||| |||| |  ||||||||||||| || ||||   | || |||||||||| |    
T  18914491 tt-gaatttttgcctcgtgcattaggggatccttttgagcatataataatatttcttccaacttgtataacctttatatataca-cataatcctactaaa 18914394  T
Q  256 acaagctggtgatcgaattggttgatgttagtgaatttttgagatgattgagtatgaaatcaagtgaatatataatttattgaatgaaattgatgtatgt 355  Q
    |||  ||  |||| ||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||| | | ||||||||||||||||||||     
T  18914393 acactctattgatggaattagttgatgttagtgaattttggagatgattgagtatgaaatcaagtgaatatatattatgttgaatgaaattgatgtatga 18914294  T
Q  356 gcataattataattaattgtgtatgttctggattgttagaattttcggagtagtaagtcatatgaaatatatgtgtagttgagttgtatgtagatataca 455  Q
    ||||||||||||||||||||||||||||||||||||| ||| || |||||| ||||||||||||||| |||||| | ||| |||||||||||||||||||    
T  18914293 gcataattataattaattgtgtatgttctggattgttggaa-ttgcggagttgtaagtcatatgaaacatatgtattgttaagttgtatgtagatataca 18914195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 22 - 162
Target Start/End: Original strand, 55499658 - 55499798
Alignment:
Q  22 agcgaaaaaccgttttgattctgttagaagttcgctcaagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatct 121  Q
    |||||||||||  ||||||||||  |  ||||||||||| |||||| ||||||||||||||| |||| | |||||||||||||||||||| ||||||       
T  55499658 agcgaaaaaccaatttgattctgccaagagttcgctcaaacgaaccgtaagcgagcagaacctagacttactgtaagccggtcgcttaagcgaactagac 55499757  T
Q  122 gtcgcttaagcgaagtgagccttagtcagcctctttttgaa 162  Q
    ||||||||||||||||    ||||||||||| |||||||||    
T  55499758 gtcgcttaagcgaagttgatcttagtcagccactttttgaa 55499798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 52 - 162
Target Start/End: Original strand, 16802029 - 16802139
Alignment:
Q  52 ttcgctcaagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagc 151  Q
    |||||||||||||||| |||||||||||||||||||| | |||||||||||||||||||| || ||| | |||| |||||||||||   ||||||| |||    
T  16802029 ttcgctcaagcgaaccgtaagcgagcagaacccagacttactgtaagccggtcgcttaagcgagctagccgtcgtttaagcgaagttgaccttagttagc 16802128  T
Q  152 ctctttttgaa 162  Q
    | |||||||||    
T  16802129 cactttttgaa 16802139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 71 - 253
Target Start/End: Original strand, 13324381 - 13324562
Alignment:
Q  71 agcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgct 170  Q
    |||||||| |||||| || ||||| ||||| |||||||||| || | | |  ||||||||||||  |||||||||||||||| |||| |||| |||||||    
T  13324381 agcgagcaaaacccaaactttctgcaagccagtcgcttaagcgagccagccttcgcttaagcgagctgagccttagtcagccactttctgaa-ttttgct 13324479  T
Q  171 tcgtgcacgagggga-cttcttgagcattctaaaatgtttcctttaacttgtataacccttgtataggtatcagaatcctacta 253  Q
    |||||||  |||||| | | |||||||||| || ||||||| || | ||| ||||||||||||||||||| || ||||||||||    
T  13324480 tcgtgcattaggggacccttttgagcattcaaagatgtttctttcagcttatataacccttgtataggtaaca-aatcctacta 13324562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 19 - 152
Target Start/End: Complemental strand, 24192418 - 24192274
Alignment:
Q  19 gtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaaccctaagcgagcag-----------aacccagaccttctgtaagccggtcgct 107  Q
    |||||||||||||| |||||||||||| ||||||||||||||||||||| | ||||| | |           ||||||||| | ||||||||||||||||    
T  24192418 gtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagtgagttgaacccagacttactgtaagccggtcgct 24192319  T
Q  108 taagtgaactatctgtcgcttaagcgaagtgagccttagtcagcc 152  Q
    |||| |||||| | |||||||||||||||||  ||||||||||||    
T  24192318 taagcgaactagccgtcgcttaagcgaagtggaccttagtcagcc 24192274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 335 - 392
Target Start/End: Original strand, 18136117 - 18136174
Alignment:
Q  335 ttgaatgaaattgatgtatgtgcataattataattaattgtgtatgttctggattgtt 392  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  18136117 ttgaatgaaattgatgtatgagcataattataattaattgtgtatgttctggattgtt 18136174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 122 - 253
Target Start/End: Original strand, 13302844 - 13302974
Alignment:
Q  122 gtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagcattctaaaatgtttcctttaacttg 220  Q
    |||||||||||||  |||||||||||||||| |||| |||| ||||||||||||||  |||||| | | |||||||||| || ||||||| || | |||     
T  13302844 gtcgcttaagcgagctgagccttagtcagccactttctgaa-ttttgcttcgtgcattaggggacccttttgagcattcaaagatgtttctttcagctta 13302942  T
Q  221 tataacccttgtataggtatcagaatcctacta 253  Q
    ||||||||||||||||||| || ||||||||||    
T  13302943 tataacccttgtataggtaaca-aatcctacta 13302974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 122 - 253
Target Start/End: Original strand, 13313520 - 13313650
Alignment:
Q  122 gtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagcattctaaaatgtttcctttaacttg 220  Q
    |||||||||||||  |||||||||||||||| |||| |||| ||||||||||||||  |||||| | | |||||||||  || ||||||| || | |||     
T  13313520 gtcgcttaagcgagctgagccttagtcagccactttctgaa-ttttgcttcgtgcattaggggacccttttgagcatttaaagatgtttctttcagctta 13313618  T
Q  221 tataacccttgtataggtatcagaatcctacta 253  Q
    ||||||||||||||||||| || ||||||||||    
T  13313619 tataacccttgtataggtaaca-aatcctacta 13313650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 339 - 392
Target Start/End: Original strand, 18129607 - 18129660
Alignment:
Q  339 atgaaattgatgtatgtgcataattataattaattgtgtatgttctggattgtt 392  Q
    |||||||||||||| | ||||||||||||||||||||| |||||||| ||||||    
T  18129607 atgaaattgatgtacgagcataattataattaattgtgaatgttctgaattgtt 18129660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 60 - 162
Target Start/End: Complemental strand, 14865319 - 14865216
Alignment:
Q  60 agcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctg-tcgcttaagcgaagtgagccttagtcagcctctttt 158  Q
    ||||| || ||||||| | |||||||||||| || ||||| ||||||||||| |||||| | | ||||||||||||| ||||  ||||||||||| |||     
T  14865319 agcgacccgtaagcgaactgaacccagacctactctaagctggtcgcttaagcgaactagccgttcgcttaagcgaactgagtgttagtcagcctttttc 14865220  T
Q  159 tgaa 162  Q
    ||||    
T  14865219 tgaa 14865216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 429 - 460
Target Start/End: Complemental strand, 12304961 - 12304930
Alignment:
Q  429 tgtagttgagttgtatgtagatatacacaggt 460  Q
    ||||||||||||||||||||||||||||||||    
T  12304961 tgtagttgagttgtatgtagatatacacaggt 12304930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 66
Target Start/End: Original strand, 10390034 - 10390083
Alignment:
Q  17 ctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaac 66  Q
    |||||||||||||||| ||||||||||||   || |||||||||||||||    
T  10390034 ctgtgagcgaaaaaccattttgattctgtccaaatttcgctcaagcgaac 10390083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 66
Target Start/End: Original strand, 10415123 - 10415172
Alignment:
Q  17 ctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaac 66  Q
    |||||||||||||||| ||||||||||||   || |||||||||||||||    
T  10415123 ctgtgagcgaaaaaccattttgattctgtccaaatttcgctcaagcgaac 10415172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 66
Target Start/End: Original strand, 10421793 - 10421842
Alignment:
Q  17 ctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaac 66  Q
    |||||||||||||||| ||||||||||||   || |||||||||||||||    
T  10421793 ctgtgagcgaaaaaccattttgattctgtccaaatttcgctcaagcgaac 10421842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 52 - 117
Target Start/End: Original strand, 12034007 - 12034072
Alignment:
Q  52 ttcgctcaagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaact 117  Q
    |||||| |||||| || ||||||| |  ||||||||||| |||||||| ||||||||||| |||||    
T  12034007 ttcgcttaagcgacccgtaagcgaactaaacccagacctactgtaagctggtcgcttaagcgaact 12034072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 408 - 457
Target Start/End: Original strand, 13036924 - 13036973
Alignment:
Q  408 gtaagtcatatgaaatatatgtgtagttgagttgtatgtagatatacaca 457  Q
    ||||||||||| | |||||||  | |||||||||||||||||||||||||    
T  13036924 gtaagtcatattatatatatgcattgttgagttgtatgtagatatacaca 13036973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 283 - 387
Target Start/End: Complemental strand, 9533335 - 9533232
Alignment:
Q  283 ttagtgaatttttgagatgattgagtatgaaatcaagtgaatatataatttattgaatgaaattgatgtatgtgcataattataattaattgtgtatgtt 382  Q
    |||||||||||  |||||||||||||||||||  ||||||| ||||| | | ||||||||| || ||| ||  |  | ||||| ||||||||||||| ||    
T  9533335 ttagtgaatttg-gagatgattgagtatgaaactaagtgaacatatactatgttgaatgaactttatgcattagtttgattatgattaattgtgtatttt 9533237  T
Q  383 ctgga 387  Q
    |||||    
T  9533236 ctgga 9533232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 433 - 461
Target Start/End: Original strand, 13968801 - 13968829
Alignment:
Q  433 gttgagttgtatgtagatatacacaggtt 461  Q
    |||||||||||||||||||||||||||||    
T  13968801 gttgagttgtatgtagatatacacaggtt 13968829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 433 - 461
Target Start/End: Original strand, 13974276 - 13974304
Alignment:
Q  433 gttgagttgtatgtagatatacacaggtt 461  Q
    |||||||||||||||||||||||||||||    
T  13974276 gttgagttgtatgtagatatacacaggtt 13974304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 433 - 461
Target Start/End: Complemental strand, 14084740 - 14084712
Alignment:
Q  433 gttgagttgtatgtagatatacacaggtt 461  Q
    |||||||||||||||||||||||||||||    
T  14084740 gttgagttgtatgtagatatacacaggtt 14084712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 433 - 461
Target Start/End: Complemental strand, 14090141 - 14090113
Alignment:
Q  433 gttgagttgtatgtagatatacacaggtt 461  Q
    |||||||||||||||||||||||||||||    
T  14090141 gttgagttgtatgtagatatacacaggtt 14090113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 433 - 461
Target Start/End: Original strand, 24123171 - 24123199
Alignment:
Q  433 gttgagttgtatgtagatatacacaggtt 461  Q
    |||||||||||||||||||||||||||||    
T  24123171 gttgagttgtatgtagatatacacaggtt 24123199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 433 - 461
Target Start/End: Complemental strand, 49399682 - 49399654
Alignment:
Q  433 gttgagttgtatgtagatatacacaggtt 461  Q
    |||||||||||||||||||||||||||||    
T  49399682 gttgagttgtatgtagatatacacaggtt 49399654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 132; Significance: 2e-68; HSPs: 4)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 122 - 461
Target Start/End: Complemental strand, 111284 - 110939
Alignment:
Q  122 gtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggacttcttgagcattctaaaatgtttcctttaacttgt 221  Q
    ||||||||||||||||||| |||||||||||| ||| |||| | || ||| ||||| ||||||||||||||||||||||| ||| | |||||||||| ||    
T  111284 gtcgcttaagcgaagtgagtcttagtcagcct-tttctgaactattacttagtgcatgaggggacttcttgagcattctataatttctcctttaactagt 111186  T
Q  222 ataacccttgtataggtatcagaatcctactagaacaagctggtgatcgaattggttgatgttagtgaatttttgagatgattgagtatgaaatcaagtg 321  Q
    |||||||| || |||||| | |||||||| |||||||||| |||||| | |||| ||| ||||||| ||| || |||||||||| |||||||| ||||||    
T  111185 ataaccctggtgtaggtaactgaatcctattagaacaagccggtgattggattgattggtgttagtaaatgttggagatgattgtgtatgaaaacaagtg 111086  T
Q  322 a--------atatataatttattgaatgaaattgatgtatgtgcataattataattaattgtgtatgttctggattgttagaattttcggagtagtaagt 413  Q
    |        ||||||||  | | |||||  |||||||||||||| ||||||||| |||||||||| ||||||||||| | || || | ||||||||||||    
T  111085 aatatgtatatatataacatgtggaatgtgattgatgtatgtgcgtaattataaataattgtgtaggttctggattg-tcgagttgt-ggagtagtaagt 110988  T
Q  414 catatgaaatatatgt-gtagttgagttgtatgtagatatacacaggtt 461  Q
    ||||||||||||||||  |||||||||||||||||||||||||||||||    
T  110987 catatgaaatatatgtaatagttgagttgtatgtagatatacacaggtt 110939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 60 - 158
Target Start/End: Original strand, 91783 - 91881
Alignment:
Q  60 agcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttt 158  Q
    ||||| || ||||||| | |||||||||||| |||||||  ||||||||||| || ||| | |||||||||||||| ||||  ||||| ||||| ||||    
T  91783 agcgacccgtaagcgaactgaacccagacctactgtaagttggtcgcttaagcgagctagccgtcgcttaagcgaactgagtgttagttagcctttttt 91881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 60 - 158
Target Start/End: Original strand, 97509 - 97607
Alignment:
Q  60 agcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttt 158  Q
    ||||| || ||||||| | |||||||||||| |||||||  ||||||||||| || ||| | |||||||||||||| ||||  ||||| ||||| ||||    
T  97509 agcgacccgtaagcgaactgaacccagacctactgtaagttggtcgcttaagcgagctagccgtcgcttaagcgaactgagtgttagttagcctttttt 97607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 67
Target Start/End: Complemental strand, 111378 - 111330
Alignment:
Q  19 gtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaacc 67  Q
    |||||||||||||| ||||||||||||   |||||||||||||||||||    
T  111378 gtgagcgaaaaaccattttgattctgtccaaagttcgctcaagcgaacc 111330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0456 (Bit Score: 120; Significance: 3e-61; HSPs: 4)
Name: scaffold0456
Description:

Target: scaffold0456; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 122 - 289
Target Start/End: Complemental strand, 407 - 241
Alignment:
Q  122 gtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggacttcttgagcattctaaaatgtttcctttaacttgt 221  Q
    |||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||| ||||||| |||||||||||||||||| |||| || |||||||    
T  407 gtcgcttaagcgaagtgaaccttagtcagcctctttctgaatttt-gcttcgtgcacaaggggacatcttgagcattctaaaatatttctttcaacttgt 309  T
Q  222 ataacccttgtataggtatcagaatcctactagaacaagctggtgatcgaattggttgatgttagtga 289  Q
    |||| | |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  308 ataaactttgtataggtatcagaatcctactagaacacgctggtgatcgaattggttgatgttagtga 241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0456; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 122 - 289
Target Start/End: Complemental strand, 7552 - 7386
Alignment:
Q  122 gtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggacttcttgagcattctaaaatgtttcctttaacttgt 221  Q
    |||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||| ||||||| |||||||||||||||||| |||| || |||||||    
T  7552 gtcgcttaagcgaagtgaaccttagtcagcctctttctgaatttt-gcttcgtgcacaaggggacatcttgagcattctaaaatatttctttcaacttgt 7454  T
Q  222 ataacccttgtataggtatcagaatcctactagaacaagctggtgatcgaattggttgatgttagtga 289  Q
    |||| | |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  7453 ataaactttgtataggtatcagaatcctactagaacacgctggtgatcgaattggttgatgttagtga 7386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0456; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 16 - 100
Target Start/End: Complemental strand, 504 - 409
Alignment:
Q  16 cctgtgagcgaaaaaccgttttgattctgttagaagttcgct-----------caagcgaaccctaagcgagcagaacccagaccttctgtaagcc 100  Q
    ||||||||||||||||| |||||||||||| |||||||||||           ||| ||||||||||||||||||||||||||| |||||||||||    
T  504 cctgtgagcgaaaaaccattttgattctgtcagaagttcgcttaagcgaaccgcaaacgaaccctaagcgagcagaacccagactttctgtaagcc 409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0456; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 16 - 100
Target Start/End: Complemental strand, 7649 - 7554
Alignment:
Q  16 cctgtgagcgaaaaaccgttttgattctgttagaagttcgct-----------caagcgaaccctaagcgagcagaacccagaccttctgtaagcc 100  Q
    ||||||||||||||||| |||||||||||| |||||||||||           ||| ||||||||||||||||||||||||||| |||||||||||    
T  7649 cctgtgagcgaaaaaccattttgattctgtcagaagttcgcttaagcgaaccgcaaacgaaccctaagcgagcagaacccagactttctgtaagcc 7554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 114; Significance: 1e-57; HSPs: 32)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 19 - 461
Target Start/End: Original strand, 13123506 - 13123967
Alignment:
Q  19 gtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaaccct-----------aagcgagcagaacccagaccttctgtaagccggtcgct 107  Q
    |||||||||||||| ||||||||||||   ||||||||||||||||||| |           |||||| | |||||||||||| |||||||  |||||||    
T  13123506 gtgagcgaaaaaccattttgattctgtccaaagttcgctcaagcgaaccgtgagcgacccgtaagcgaactgaacccagacctactgtaagttggtcgct 13123605  T
Q  108 taagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggacttcttgagcattctaaaatgt 207  Q
    |||| || ||| | ||||||||||||||||||| |||||||||||| ||| |||| | || ||| ||||| ||||||||||||||||||||||| ||  |    
T  13123606 taagcgagctagccgtcgcttaagcgaagtgagtcttagtcagcct-tttctgaactattacttagtgcatgaggggacttcttgagcattctataactt 13123704  T
Q  208 ttcctttaacttgtataacccttgtataggtatcagaatcctactagaacaagctggtgatcgaattggttgatgttagtgaatttttgagatgattgag 307  Q
       |||||||| |||||||| | || |||||| ||||| |||| |||||||||| |||||| | |||| ||| | ||||| ||| || | | |||||| |    
T  13123705 cctctttaactagtataaccttggtgtaggtagcagaagcctattagaacaagccggtgattggattgattggtattagtaaatgttggtgttgattgtg 13123804  T
Q  308 tatgaaatcaagtgaata--tata-atttat-------tgaatgaaattgatgtatgtgcataattataattaattgtgtatgttctggattgttagaat 397  Q
    |||| ||  |||||||||  |||| || |||        |||||  |||||||||||||||||||||||| ||||||||||||||||| |||| | || |    
T  13123805 tatgtaaataagtgaatacgtatatatgtataacatgaggaatgtgattgatgtatgtgcataattataaataattgtgtatgttctgaattg-tcgagt 13123903  T
Q  398 tttcggagtagtaagtcatatgaaatatatgt-gtagttgagttgtatgtagatatacacaggtt 461  Q
    | | |||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  13123904 tgt-ggagtattaagtcatatgaaatatatgtagtagttgagttgtatgtagatatacacaggtt 13123967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 60 - 325
Target Start/End: Complemental strand, 13743121 - 13742860
Alignment:
Q  60 agcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctcttttt 159  Q
    ||||| || ||||||||| |||||||||||| || ||||||||||||||||| |||||| | |||||||||||||||||||||||||||||||   || |    
T  13743121 agcgacccgtaagcgagctgaacccagacctactataagccggtcgcttaagcgaactagccgtcgcttaagcgaagtgagccttagtcagcc---ttct 13743025  T
Q  160 gaatttttgcttcgtgcacgaggggacttcttgagcattctaaaatgtttcctttaacttgtataacccttgtataggtatcagaatcctactagaacaa 259  Q
    ||| ||||| |||||||| ||||||||||||||||||||||| ||| |||| ||||||| |||||||||| || |||||| | |||||||| |||||| |    
T  13743024 gaacttttgtttcgtgcatgaggggacttcttgagcattctataatatttcttttaactagtataaccctggtgtaggtaaccgaatcctattagaacga 13742925  T
Q  260 gctggtgatcgaattggttgatgttagtgaatttttgagatgattgagtatgaaatcaagtgaata 325  Q
    || |  ||| | |||  ||| ||||||| ||| || ||| |||||| |||||||| ||||||||||    
T  13742924 gccgaggattggattaattggtgttagt-aatgttggaggtgattgtgtatgaaaacaagtgaata 13742860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 69 - 461
Target Start/End: Original strand, 12710496 - 12710896
Alignment:
Q  69 taagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttg 168  Q
    ||||||| | |||||||||||| |||||||  ||||||||||| || ||| | ||||||||||||||||||| |||||||||||| ||| |||| | ||     
T  12710496 taagcgaactgaacccagacctactgtaagttggtcgcttaagcgagctagccgtcgcttaagcgaagtgagtcttagtcagcct-tttctgaactatta 12710594  T
Q  169 cttcgtgcacgaggggacttcttgagcattctaaaatgtttcctttaacttgtataacccttgtataggtatcagaatcctactagaacaagctggtgat 268  Q
    ||| ||||| ||||||||||||||||||||||| ||  |   |||||||| |||||||| | || ||||||  |||| |||| || ||||||| ||||||    
T  12710595 cttagtgcatgaggggacttcttgagcattctataacttcctctttaactagtataaccttggtgtaggtagaagaagcctattataacaagccggtgat 12710694  T
Q  269 cgaattggttgatgttagtgaatttttgagatgattgagtatgaaatcaagtgaata--tata-atttat-------tgaatgaaattgatgtatgtgca 358  Q
     | |||| ||| | ||||| ||| || | | |||||| ||||| ||  |||||||||  |||| || |||        |||||  |||||||||||||||    
T  12710695 tggattgattggtattagtaaatgttggtgttgattgtgtatgtaaataagtgaatacgtatatatgtataacatgaggaatgtgattgatgtatgtgca 12710794  T
Q  359 taattataattaattgtgtatgttctggattgttagaattttcggagtagtaagtcatatgaaatatatgt-gtagttgagttgtatgtagatatacaca 457  Q
    ||||||||| ||||||||||||||||| |||| | || || | |||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  12710795 taattataaataattgtgtatgttctgaattg-tcgagttat-ggagtattaagtcatatgaaatatatgtagtagttgagttgtatgtagatatacaca 12710892  T
Q  458 ggtt 461  Q
    ||||    
T  12710893 ggtt 12710896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 13 - 235
Target Start/End: Complemental strand, 16676845 - 16676623
Alignment:
Q  13 gaacctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagt 112  Q
    |||||||| ||||||||||| |||||||||||| |  | |||||||||||||||| ||||||||| |||||||||| | ||||||||||||||||||||     
T  16676845 gaacctgtaagcgaaaaaccattttgattctgtcaagaattcgctcaagcgaaccataagcgagcggaacccagacttactgtaagccggtcgcttaagc 16676746  T
Q  113 gaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagcattctaaaatgtttcc 211  Q
    ||||||   ||||||||||||||||   |||||||||||| |||||||||   |||| |||||||  |||||| | | |||||||||  || ||| ||||    
T  16676745 gaactagtcgtcgcttaagcgaagttgaccttagtcagccactttttgaa-cgttgcctcgtgcattaggggacccttttgagcattgaaacatggttcc 16676647  T
Q  212 tttaacttgtataacccttgtata 235  Q
    || |||||||||||||||| ||||    
T  16676646 ttcaacttgtataacccttatata 16676623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 13 - 235
Target Start/End: Complemental strand, 17651081 - 17650859
Alignment:
Q  13 gaacctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagt 112  Q
    |||||||| ||||||||||| |||||||||||| |  | |||||||||||||||| ||||||||| |||||||||| | ||||||||||||||||||||     
T  17651081 gaacctgtaagcgaaaaaccattttgattctgtcaagaattcgctcaagcgaaccataagcgagcggaacccagacttactgtaagccggtcgcttaagc 17650982  T
Q  113 gaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagcattctaaaatgtttcc 211  Q
    ||||||   ||||||||||||||||   |||||||||||| |||||||||   |||| |||||||  |||||| | | |||||||||  || ||| ||||    
T  17650981 gaactagtcgtcgcttaagcgaagttgaccttagtcagccactttttgaa-cgttgcctcgtgcattaggggacccttttgagcattgaaacatggttcc 17650883  T
Q  212 tttaacttgtataacccttgtata 235  Q
    || |||||||||||||||| ||||    
T  17650882 ttcaacttgtataacccttatata 17650859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 344 - 461
Target Start/End: Complemental strand, 13742803 - 13742686
Alignment:
Q  344 attgatgtatgtgcataattataattaattgtgtatgttctggattgttagaattttcggagtagtaagtcatatgaaatatatgt-gtagttgagttgt 442  Q
    ||||||||||| |||||||||||| |||||||||||||||||||||||| || || | ||||||||||||||||||||| ||||||  |||| |||||||    
T  13742803 attgatgtatgagcataattataaataattgtgtatgttctggattgtttgagttgt-ggagtagtaagtcatatgaaacatatgtaatagtcgagttgt 13742705  T
Q  443 atgtagatatacacaggtt 461  Q
    |||| ||||||||||||||    
T  13742704 atgttgatatacacaggtt 13742686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 16 - 200
Target Start/End: Complemental strand, 13006901 - 13006706
Alignment:
Q  16 cctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaaccct-----------aagcgagcagaacccaga-ccttctgtaagccggt 103  Q
    ||||||||||||||||| |||| |||||||   ||||||||||||||||||| |           |||||| | ||||||||| ||| |||||||| |||    
T  13006901 cctgtgagcgaaaaaccattttcattctgtccaaagttcgctcaagcgaaccgtgagcgacccgtaagcgaactgaacccagaacctactgtaagctggt 13006802  T
Q  104 cgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggacttcttgagcattct 200  Q
    |||||||| |||||| | |||||||||||||||||| ||||| ||||||| ||| |||| | |||||| ||||| ||||||||||||||||| ||||    
T  13006801 cgcttaagcgaactagccgtcgcttaagcgaagtgaaccttaatcagcct-tttctgaactgttgcttagtgcatgaggggacttcttgagcgttct 13006706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 91 - 329
Target Start/End: Complemental strand, 46625403 - 46625166
Alignment:
Q  91 tctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttc 189  Q
    ||||||||| ||||||||||| || | | | ||||||||||||||||  | ||||||||||| || |||||| ||||| ||||||||| |||| | | |     
T  46625403 tctgtaagcaggtcgcttaagcgagccagccgtcgcttaagcgaagtaggtcttagtcagccactctttgaa-ttttgtttcgtgcactagggaatcctt 46625305  T
Q  190 ttgagcattctaaaatgtttcctttaacttgtataacccttgtataggtatcagaatcctactagaacaagctggtgatcgaattggttgatgttagtga 289  Q
    ||||||||| ||||||||||| || ||||||||| ||||| ||||| | | |  |||||||||  ||||   |||| || |||||||||||   ||||||    
T  46625304 ttgagcattttaaaatgtttctttcaacttgtatgaccctggtatatgca-ctaaatcctactgaaacacattggtaattgaattggttgaatatagtga 46625206  T
Q  290 atttttgagatgattgagtatgaaatcaagtgaatatata 329  Q
    |||||  | |||||||||||||||| ||| ||||||||||    
T  46625205 attttgaatatgattgagtatgaaaccaaatgaatatata 46625166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 344 - 460
Target Start/End: Complemental strand, 13006604 - 13006489
Alignment:
Q  344 attgatgtatgtgcataattataattaattgtgtatgttctggattgttagaattttcggagtagtaagtcatatgaaatatatgt-gtagttgagttgt 442  Q
    |||||||||||||||||||||||| |||||||||| | ||||||||||| || || | ||||||||||||||||| | | |||||| || || |||||||    
T  13006604 attgatgtatgtgcataattataaataattgtgtaag-tctggattgtttgagttgt-ggagtagtaagtcatattatacatatgtagtggtcgagttgt 13006507  T
Q  443 atgtagatatacacaggt 460  Q
    ||||||||||||||||||    
T  13006506 atgtagatatacacaggt 13006489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 91 - 350
Target Start/End: Complemental strand, 13678906 - 13678649
Alignment:
Q  91 tctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaag-tgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-ctt 188  Q
    ||||||||||||||||||||| |||| | | ||||||||||||||| ||| |||||||||||| |||||||||  ||||| |||||||  |||||| | |    
T  13678906 tctgtaagccggtcgcttaagcgaaccagccgtcgcttaagcgaagatga-ccttagtcagccactttttgaa-ctttgcctcgtgcattaggggatcct 13678809  T
Q  189 cttgagcattctaaaatgtttcctttaacttgtataacccttgtataggtatcagaatcctactagaacaagctggtgatcgaattggttgatgttagtg 288  Q
     |||||||||  |||||||||| || || |||||||||| || |||| | | | ||||||||||  ||||   |||| |||||||| |||||  ||||||    
T  13678808 tttgagcattaaaaaatgtttctttcaatttgtataacctttatatatgca-ctgaatcctactgaaacactttggtaatcgaattagttgagtttagtg 13678710  T
Q  289 aatttttgagatgattgagtatgaaatcaagtgaatatataatttattgaatgaaattgatg 350  Q
    || |||  |||||||||||||| | | |||||||| ||||| | | ||||||||| ||||||    
T  13678709 aa-tttgaagatgattgagtatcataccaagtgaacatatactatgttgaatgaacttgatg 13678649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 52 - 162
Target Start/End: Original strand, 11389910 - 11390020
Alignment:
Q  52 ttcgctcaagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaag-tgagccttagtcag 150  Q
    |||||||||||||||| ||||||||| |||||||||| | |||| || |||||||||||| || ||| | ||||||||||||||| ||| ||||||||||    
T  11389910 ttcgctcaagcgaaccgtaagcgagcggaacccagacttactgtgagtcggtcgcttaagcgagctagccgtcgcttaagcgaagatga-ccttagtcag 11390008  T
Q  151 cctctttttgaa 162  Q
    || |||||||||    
T  11390009 ccactttttgaa 11390020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 58 - 136
Target Start/End: Original strand, 20311631 - 20311709
Alignment:
Q  58 caagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaag 136  Q
    |||||||||| |||||||||||||||||||| | ||| |||||||||||||||| || ||| | |||||||||||||||    
T  20311631 caagcgaaccgtaagcgagcagaacccagacttactgcaagccggtcgcttaagcgagctagccgtcgcttaagcgaag 20311709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 16 - 151
Target Start/End: Original strand, 12591230 - 12591377
Alignment:
Q  16 cctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaaccct-----------aagcgagcagaacccaga-ccttctgtaagccggt 103  Q
    ||||||||||||||||| ||||||||||||   || |||||||||||||||| |           |||||| | || |||||| ||| |||||||| |||    
T  12591230 cctgtgagcgaaaaaccattttgattctgtccaaatttcgctcaagcgaaccgtgagcgacccgtaagcgaactgatcccagatcctactgtaagctggt 12591329  T
Q  104 cgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagc 151  Q
    |||||||| |||||| | |||||||||||||||||| |||||||||||    
T  12591330 cgcttaagcgaactagccgtcgcttaagcgaagtgaaccttagtcagc 12591377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 70 - 185
Target Start/End: Original strand, 11383440 - 11383554
Alignment:
Q  70 aagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaag-tgagccttagtcagcctctttttgaatttttg 168  Q
    |||||||| |||||||||| | |||| |||| |||||||||| || ||| | ||||||||||||||| ||| |||||||||||| |||||||||  ||||    
T  11383440 aagcgagcggaacccagacttactgtgagcctgtcgcttaagcgagctagccgtcgcttaagcgaagatga-ccttagtcagccactttttgaa-ctttg 11383537  T
Q  169 cttcgtgcacgagggga 185  Q
    | |||||||| ||||||    
T  11383538 cctcgtgcactagggga 11383554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 60 - 162
Target Start/End: Complemental strand, 16090559 - 16090457
Alignment:
Q  60 agcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctcttttt 159  Q
    ||||| || ||||||| | |||||||||||| |||||||  ||||||||||| || ||| | |||||||||||||| ||||  ||||||||||| ||| |    
T  16090559 agcgacccgtaagcgaactgaacccagacctactgtaagatggtcgcttaagcgagctagccgtcgcttaagcgaactgagtgttagtcagcctttttct 16090460  T
Q  160 gaa 162  Q
    |||    
T  16090459 gaa 16090457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 90 - 162
Target Start/End: Original strand, 14320243 - 14320315
Alignment:
Q  90 ttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaa 162  Q
    |||||| ||||||||||||||| || ||| |  ||||||||||||| ||||||||||||||||| ||| ||||    
T  14320243 ttctgtgagccggtcgcttaagcgagctacccttcgcttaagcgaactgagccttagtcagcctttttctgaa 14320315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 296 - 387
Target Start/End: Complemental strand, 18607339 - 18607248
Alignment:
Q  296 gagatgattgagtatgaaatcaagtgaatatataatttattgaatgaaattgatgtatgtgcataattataattaattgtgtatgttctgga 387  Q
    ||||||||||||||||||| |||||||| ||||| | | ||||||||| |||||| ||  |  | ||||| ||||||||||||| |||||||    
T  18607339 gagatgattgagtatgaaaccaagtgaacatatactatgttgaatgaacttgatgcattagtttgattatgattaattgtgtattttctgga 18607248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 47 - 136
Target Start/End: Original strand, 21231554 - 21231643
Alignment:
Q  47 agaagttcgctcaagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaag 136  Q
    ||||||||||||||||||||| | ||||||| ||||||  || |||||| ||| |||||||||||  ||||    |||||||||||||||    
T  21231554 agaagttcgctcaagcgaaccgtcagcgagcggaaccccaactttctgtgagctggtcgcttaagcaaactggtcgtcgcttaagcgaag 21231643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 283 - 387
Target Start/End: Complemental strand, 147556 - 147453
Alignment:
Q  283 ttagtgaatttttgagatgattgagtatgaaatcaagtgaatatataatttattgaatgaaattgatgtatgtgcataattataattaattgtgtatgtt 382  Q
    |||||||||||  ||||||||||||||||||| |||||||| || || | | ||||||||| |||||| ||  |  | ||||| ||||||||||||| ||    
T  147556 ttagtgaatttg-gagatgattgagtatgaaaccaagtgaacatgtactatgttgaatgaacttgatgcattagtttgattatgattaattgtgtatttt 147458  T
Q  383 ctgga 387  Q
    |||||    
T  147457 ctgga 147453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 60 - 140
Target Start/End: Complemental strand, 2464838 - 2464758
Alignment:
Q  60 agcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgag 140  Q
    ||||| || ||||||| | |||||||||||| |||||||  ||||||||||| || ||| | |||||||||||||| ||||    
T  2464838 agcgacccgtaagcgaactgaacccagacctactgtaagttggtcgcttaagcgagctagccgtcgcttaagcgaactgag 2464758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 60 - 140
Target Start/End: Original strand, 3858007 - 3858087
Alignment:
Q  60 agcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgag 140  Q
    ||||| || ||||||| | |||||||||||| |||||||  ||||||||||| || ||| | |||||||||||||| ||||    
T  3858007 agcgacccgtaagcgaactgaacccagacctactgtaagttggtcgcttaagcgagctagccgtcgcttaagcgaactgag 3858087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 429 - 460
Target Start/End: Complemental strand, 11303064 - 11303033
Alignment:
Q  429 tgtagttgagttgtatgtagatatacacaggt 460  Q
    ||||||||||||||||||||||||||||||||    
T  11303064 tgtagttgagttgtatgtagatatacacaggt 11303033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 67
Target Start/End: Original strand, 3857953 - 3858003
Alignment:
Q  18 tgtgagcgaaaaaccgtttt-gattctgttagaagttcgctcaagcgaacc 67  Q
    ||||||||||||||| |||| |||||||||  |||||||||||||||||||    
T  3857953 tgtgagcgaaaaaccatttttgattctgttcaaagttcgctcaagcgaacc 3858003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 333 - 387
Target Start/End: Original strand, 16475929 - 16475983
Alignment:
Q  333 tattgaatgaaattgatgtatgtgcataattataattaattgtgtatgttctgga 387  Q
    ||||||||||| | |||||||| |||| ||||| ||||||||||||| |||||||    
T  16475929 tattgaatgaactcgatgtatgagcatgattatgattaattgtgtattttctgga 16475983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 60 - 150
Target Start/End: Original strand, 29181690 - 29181780
Alignment:
Q  60 agcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcag 150  Q
    ||||| || ||||||| | |||||||||||| |||||||  ||||||||||| || ||| | ||||||||||| || ||||  ||||||||    
T  29181690 agcgacccataagcgaactgaacccagacctactgtaagatggtcgcttaagcgagctagccgtcgcttaagcaaactgagtgttagtcag 29181780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 408 - 457
Target Start/End: Complemental strand, 12694826 - 12694777
Alignment:
Q  408 gtaagtcatatgaaatatatgtgtagttgagttgtatgtagatatacaca 457  Q
    ||||||||||| | |||||||  | |||||||||||||||||||||||||    
T  12694826 gtaagtcatattatatatatgcattgttgagttgtatgtagatatacaca 12694777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 69 - 117
Target Start/End: Complemental strand, 2966431 - 2966383
Alignment:
Q  69 taagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaact 117  Q
    ||||||| | |||||||||||| |||||||| ||||||||||| |||||    
T  2966431 taagcgaactgaacccagacctactgtaagctggtcgcttaagcgaact 2966383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 433 - 461
Target Start/End: Complemental strand, 4280172 - 4280144
Alignment:
Q  433 gttgagttgtatgtagatatacacaggtt 461  Q
    |||||||||||||||||||||||||||||    
T  4280172 gttgagttgtatgtagatatacacaggtt 4280144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 67
Target Start/End: Original strand, 12710435 - 12710483
Alignment:
Q  19 gtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaacc 67  Q
    |||||| ||||||| ||||||||||||   |||||||||||||||||||    
T  12710435 gtgagccaaaaaccattttgattctgtccaaagttcgctcaagcgaacc 12710483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 348 - 392
Target Start/End: Complemental strand, 13318051 - 13318007
Alignment:
Q  348 atgtatgtgcataattataattaattgtgtatgttctggattgtt 392  Q
    ||||||| |||||||||| ||||||||||||  ||||||||||||    
T  13318051 atgtatgcgcataattatgattaattgtgtaatttctggattgtt 13318007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 433 - 461
Target Start/End: Complemental strand, 19616504 - 19616476
Alignment:
Q  433 gttgagttgtatgtagatatacacaggtt 461  Q
    |||||||||||||||||||||||||||||    
T  19616504 gttgagttgtatgtagatatacacaggtt 19616476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 69 - 117
Target Start/End: Original strand, 20907038 - 20907086
Alignment:
Q  69 taagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaact 117  Q
    ||||||| | |||||||||||| |||||||| ||||||||||| |||||    
T  20907038 taagcgaactgaacccagacctactgtaagctggtcgcttaagcgaact 20907086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 110; Significance: 3e-55; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 16 - 461
Target Start/End: Original strand, 8046420 - 8046893
Alignment:
Q  16 cctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaaccct-----------aagcgagcagaacccagaccttctgtaagccggtc 104  Q
    ||||||||||||||||| ||||||||||||   ||||||||||||||||||| |           |||||| | |||||||||||| || ||||  ||||    
T  8046420 cctgtgagcgaaaaaccattttgattctgtccaaagttcgctcaagcgaaccgtgagcgacccgtaagcgaactgaacccagacctactataagttggtc 8046519  T
Q  105 gcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggacttcttgagcattctaaaa 204  Q
    ||||||| || |||   |||||||||||||||||||||||||||||||| ||| |||| | || ||| ||||| ||||||||||||||||||||||| ||    
T  8046520 gcttaagcgagctagacgtcgcttaagcgaagtgagccttagtcagcctttttctgaactgttacttagtgcatgaggggacttcttgagcattctataa 8046619  T
Q  205 tgtttcctttaacttgtataacccttgtataggtatcagaatcctactagaacaagctggtgatcgaattggttgatgttagtgaatttttgagatgatt 304  Q
      |   |||||||| |||||||||| || |||||| | |||||||| |||||||||| || ||| | |||| ||| ||||||| ||| || |||||||||    
T  8046620 cttcctctttaactagtataaccctggtgtaggtaaccgaatcctattagaacaagccggcgattggattgattggtgttagtaaatgttggagatgatt 8046719  T
Q  305 gagtatgaaatcaagtgaatatata-attta-----------------ttgaatgaaattgatgtatgtgcataattataattaattgtgtatgttctgg 386  Q
    | |||||||| |||||||||||||| || ||                 | |||||  |||||||| ||||||||||||||| |||||||||||| | |||    
T  8046720 gtgtatgaaaacaagtgaatatatatatatatatatatatataacatgtggaatgtgattgatgtgtgtgcataattataaataattgtgtatgatttgg 8046819  T
Q  387 attgttagaattttcggagtagtaagtcatatgaaatatatgt-gtagttgagttgtatgtagatatacacaggtt 461  Q
    |||  | || || | ||||||||||||||||||||||||||||  |||| ||||||||||||||||||||||||||    
T  8046820 attact-gagttgt-ggagtagtaagtcatatgaaatatatgtaatagtcgagttgtatgtagatatacacaggtt 8046893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 13 - 136
Target Start/End: Complemental strand, 15407608 - 15407485
Alignment:
Q  13 gaacctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagt 112  Q
    ||||| || ||||||||||| |||||||||||  ||||||||||||||||||||| | ||||||| ||||| |||| |||||| |||||||||||||||     
T  15407608 gaacccgtaagcgaaaaaccattttgattctgccagaagttcgctcaagcgaaccgtcagcgagcggaacctagactttctgtgagccggtcgcttaagc 15407509  T
Q  113 gaactatctgtcgcttaagcgaag 136  Q
    |||||  | |||||||||||||||    
T  15407508 gaactggccgtcgcttaagcgaag 15407485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 50 - 152
Target Start/End: Complemental strand, 14486154 - 14486052
Alignment:
Q  50 agttcgctcaagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtca 149  Q
    |||||||||||||||||| | ||||||| ||||||| ||  ||||||||||||||||||||| || | | |  |||||||||||||||||||||||||||    
T  14486154 agttcgctcaagcgaaccgtgagcgagcggaacccaaactctctgtaagccggtcgcttaagcgagccagccttcgcttaagcgaagtgagccttagtca 14486055  T
Q  150 gcc 152  Q
    |||    
T  14486054 gcc 14486052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 335 - 392
Target Start/End: Original strand, 14555881 - 14555938
Alignment:
Q  335 ttgaatgaaattgatgtatgtgcataattataattaattgtgtatgttctggattgtt 392  Q
    |||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||    
T  14555881 ttgaatgaaattgatgtatgagcataattataattaattgtgtttgttctggattgtt 14555938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 101 - 241
Target Start/End: Complemental strand, 11847537 - 11847397
Alignment:
Q  101 ggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagcattc 199  Q
    ||||||||||| |||||| | |||||||||||||  ||||||||||||||||||||| ||||  ||||||| |||||| |||||| | | ||||| |||     
T  11847537 ggtcgcttaagcgaactacccgtcgcttaagcgagctgagccttagtcagcctctttctgaa-ctttgctttgtgcactaggggacccttttgagtattt 11847439  T
Q  200 taaaatgtttcctttaacttgtataacccttgtataggtatc 241  Q
      || |||||| | || |||||||||| ||||||||||||||    
T  11847438 gtaagtgtttcttctagcttgtataactcttgtataggtatc 11847397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 190 - 253
Target Start/End: Complemental strand, 14486037 - 14485975
Alignment:
Q  190 ttgagcattctaaaatgtttcctttaacttgtataacccttgtataggtatcagaatcctacta 253  Q
    ||||||||||||||||||||| || | |||||||||||||||||||||||||| ||||||||||    
T  14486037 ttgagcattctaaaatgtttctttcagcttgtataacccttgtataggtatca-aatcctacta 14485975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 16 - 153
Target Start/End: Complemental strand, 53483171 - 53483022
Alignment:
Q  16 cctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaaccct-----------aagcgagcagaacccaga-ccttctgtaagccggt 103  Q
    ||||||||||||||||| ||||||||||||   ||||||||||||||||||| |           |||||| | || |||||| ||| |||||||| |||    
T  53483171 cctgtgagcgaaaaaccattttgattctgtccaaagttcgctcaagcgaaccgtgagcgacccgtaagcgaactgagcccagagcctactgtaagctggt 53483072  T
Q  104 cgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcct 153  Q
    |||||||| |||||  | |||||||||||||||||| |||||||||||||    
T  53483071 cgcttaagcgaacttgccgtcgcttaagcgaagtgaaccttagtcagcct 53483022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 60 - 162
Target Start/End: Original strand, 16147412 - 16147514
Alignment:
Q  60 agcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctcttttt 159  Q
    ||||| || ||||||| | |||||||||||| |||||||  ||||||||||| || ||| | |||||||||||||| ||||  ||||||||||| ||| |    
T  16147412 agcgacccgtaagcgaactgaacccagacctactgtaagatggtcgcttaagcgagctagccgtcgcttaagcgaactgagtgttagtcagcctttttct 16147511  T
Q  160 gaa 162  Q
    |||    
T  16147512 gaa 16147514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 123 - 235
Target Start/End: Complemental strand, 8834297 - 8834185
Alignment:
Q  123 tcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagcattctaaaatgtttcctttaacttgt 221  Q
    ||||||||||||||   | ||||||||||| |||||||| |||||||||| ||||| || | | | | |||||| |||||||||||||| || |||||||    
T  8834297 tcgcttaagcgaagaaggtcttagtcagccactttttga-tttttgcttcatgcactagagaatccttttgagcgttctaaaatgtttctttcaacttgt 8834199  T
Q  222 ataacccttgtata 235  Q
    |||||| |||||||    
T  8834198 ataacctttgtata 8834185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 69 - 186
Target Start/End: Complemental strand, 27905729 - 27905613
Alignment:
Q  69 taagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttg 168  Q
    |||||||||| |||||  ||||| ||| ||| | ||||||||| || ||| |  ||||||||||||  ||||||| |||||||| |||| ||||||||||    
T  27905729 taagcgagcaaaaccccaaccttttgtgagctgatcgcttaagcgagctacccttcgcttaagcgagctgagcct-agtcagccactttctgaatttttg 27905631  T
Q  169 cttcgtgcacgaggggac 186  Q
    |||||||||  |||||||    
T  27905630 cttcgtgcattaggggac 27905613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 91 - 183
Target Start/End: Complemental strand, 15244658 - 15244566
Alignment:
Q  91 tctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggg 183  Q
    ||||||||||||||||||||| ||   | | ||||||||| |||||   | ||||||||||| ||||||||| ||||||||||||||| ||||    
T  15244658 tctgtaagccggtcgcttaagcgagtcaaccgtcgcttaatcgaagaaggtcttagtcagccactttttgaaattttgcttcgtgcactaggg 15244566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 283 - 384
Target Start/End: Complemental strand, 18212623 - 18212523
Alignment:
Q  283 ttagtgaatttttgagatgattgagtatgaaatcaagtgaatatataatttattgaatgaaattgatgtatgtgcataattataattaattgtgtatgtt 382  Q
    |||||||||||  ||||||||||||||||||| |||||||| ||||| | | ||||||||| |||||| ||  |  | ||||| ||||||||||||| ||    
T  18212623 ttagtgaatttg-gagatgattgagtatgaaaccaagtgaacatatactatgttgaatgaacttgatgcattagtttgattatgattaattgtgtatttt 18212525  T
Q  383 ct 384  Q
    ||    
T  18212524 ct 18212523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 429 - 460
Target Start/End: Complemental strand, 15533998 - 15533967
Alignment:
Q  429 tgtagttgagttgtatgtagatatacacaggt 460  Q
    ||||||||||||||||||||||||||||||||    
T  15533998 tgtagttgagttgtatgtagatatacacaggt 15533967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 61 - 233
Target Start/End: Complemental strand, 13887258 - 13887086
Alignment:
Q  61 gcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttg 160  Q
    ||||||| | |||||||||||| |  ||  ||||||||||||||| ||||| || | | | |||||||||||||||   | |||||| |||| | |||||    
T  13887258 gcgaaccattagcgagcagaacgccaactctctgtaagccggtcgtttaagcgagccagccgtcgcttaagcgaagaaggtcttagttagccac-ttttg 13887160  T
Q  161 aatttttgcttcgtgcacgagggga-cttcttgagcattct-aaaatgtttcctttaacttgtataacccttgta 233  Q
    || ||||||||||||||| |||| | | | |||| |||| | |||||||||| || ||||||||||||| |||||    
T  13887159 aa-ttttgcttcgtgcactagggaatccttttgaacattttaaaaatgtttctttcaacttgtataacctttgta 13887086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 61 - 233
Target Start/End: Complemental strand, 13888115 - 13887943
Alignment:
Q  61 gcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttg 160  Q
    ||||||| | |||||||||||| |  ||  ||||||||||||||| ||||| || | | | |||||||||||||||   | |||||| |||| | |||||    
T  13888115 gcgaaccattagcgagcagaacgccaactctctgtaagccggtcgtttaagcgagccagccgtcgcttaagcgaagaaggtcttagttagccac-ttttg 13888017  T
Q  161 aatttttgcttcgtgcacgagggga-cttcttgagcattct-aaaatgtttcctttaacttgtataacccttgta 233  Q
    || ||||||||||||||| |||| | | | |||| |||| | |||||||||| || ||||||||||||| |||||    
T  13888016 aa-ttttgcttcgtgcactagggaatccttttgaacattttaaaaatgtttctttcaacttgtataacctttgta 13887943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 91 - 235
Target Start/End: Complemental strand, 15307563 - 15307415
Alignment:
Q  91 tctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttc 189  Q
    |||||||| |||||||||||| || | | |  ||||||||||||||   | ||||||||||| ||||| |||  |||||||||||||| |||| | | |     
T  15307563 tctgtaagtcggtcgcttaagcgagccagccatcgcttaagcgaagaaggtcttagtcagccacttttcgaaactttgcttcgtgcactagggaatcctt 15307464  T
Q  190 ttgagcattctaaaatgtttccttt---aacttgtataacccttgtata 235  Q
    | ||||||| ||||||||||  |||   ||||||||||||| |||||||    
T  15307463 tcgagcattttaaaatgttttttttttcaacttgtataacctttgtata 15307415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 408 - 457
Target Start/End: Complemental strand, 30237987 - 30237938
Alignment:
Q  408 gtaagtcatatgaaatatatgtgtagttgagttgtatgtagatatacaca 457  Q
    ||||||||||| | |||||||  | |||||||||||||||||||||||||    
T  30237987 gtaagtcatattatatatatgcattgttgagttgtatgtagatatacaca 30237938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 429 - 457
Target Start/End: Complemental strand, 14048416 - 14048388
Alignment:
Q  429 tgtagttgagttgtatgtagatatacaca 457  Q
    |||||||||||||||||||||||||||||    
T  14048416 tgtagttgagttgtatgtagatatacaca 14048388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0117 (Bit Score: 106; Significance: 7e-53; HSPs: 1)
Name: scaffold0117
Description:

Target: scaffold0117; HSP #1
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 19 - 461
Target Start/End: Original strand, 9167 - 9628
Alignment:
Q  19 gtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaaccct-----------aagcgagcagaacccagaccttctgtaagccggtcgct 107  Q
    |||||||||||||| ||||||||||||   ||||||||||||||||||| |           |||||| | |||||||||||| |||||||  |||||||    
T  9167 gtgagcgaaaaaccattttgattctgtccaaagttcgctcaagcgaaccgtgagcgacccataagcgaactgaacccagacctactgtaagttggtcgct 9266  T
Q  108 taagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggacttcttgagcattctaaaatgt 207  Q
    |||| || ||| | ||||||||||||||||||| |||||||||||| ||| | || |||| ||| ||||| ||||||||||||||||||||||  ||  |    
T  9267 taagcgagctagccgtcgcttaagcgaagtgagtcttagtcagcct-tttctaaacttttacttagtgcatgaggggacttcttgagcattctgtaactt 9365  T
Q  208 ttcctttaacttgtataacccttgtataggtatcagaatcctactagaacaagctggtgatcgaattggttgatgttagtgaatttttgagatgattgag 307  Q
       |||||||| |||||||| | || |||||| ||||| |||| |||||||||| |||||  | |||| |||   ||||| ||| || | | |||||| |    
T  9366 cctctttaactagtataaccttggtgtaggtagcagaagcctattagaacaagccggtgactggattgattggcattagtaaatgttggtgttgattgtg 9465  T
Q  308 tatgaaatcaagtgaata--tata-atttat-------tgaatgaaattgatgtatgtgcataattataattaattgtgtatgttctggattgttagaat 397  Q
    |||||||  |||||||||  |||| || |||       ||||||  |||||||||||||||| ||||||| ||||||| |||||||||||||| | || |    
T  9466 tatgaaaataagtgaatacgtatatatgtataacatgatgaatgtgattgatgtatgtgcatgattataaataattgtatatgttctggattg-tcgagt 9564  T
Q  398 tttcggagtagtaagtcatatgaaatatatgt-gtagttgagttgtatgtagatatacacaggtt 461  Q
    | | |||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  9565 tgt-ggagtattaagtcatatgaaatatatgtagtagttgagttgtatgtagatatacacaggtt 9628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 104; Significance: 1e-51; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 60 - 461
Target Start/End: Complemental strand, 23866026 - 23865615
Alignment:
Q  60 agcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctcttttt 159  Q
    ||||| || ||||||| | |||||||||||| |||||||  ||||||||||| || ||| | ||||||||||||||||||| |||||||||||| ||| |    
T  23866026 agcgacccgtaagcgaactgaacccagacctactgtaagttggtcgcttaagcgagctagccgtcgcttaagcgaagtgagtcttagtcagcctttttct 23865927  T
Q  160 gaatttttgcttcgtgcacgaggggacttcttgagcattctaaaatgtttcctttaacttgtataacccttgtataggtatcagaatcctactagaacaa 259  Q
    ||| | || ||| ||||| ||||||||||||||||||||||| ||  |   |||||||| |||||||| | || |||||| ||||| |||| ||||||||    
T  23865926 gaactattacttagtgcatgaggggacttcttgagcattctataacttcctctttaactagtataaccttggtgtaggtagcagaagcctattagaacaa 23865827  T
Q  260 gctggtgatcgaattggttgatgttagtgaatttttgagatgattgagtatgaaatcaagtgaata----------tataatttattgaatgaaattgat 349  Q
    || |||||| | |||| ||| | ||||| ||| || |   |||||| ||||| ||  |||||||||          |||||  |   |||||  ||||||    
T  23865826 gccggtgattggattgattggtattagtaaatgttggtattgattgtgtatgtaaataagtgaatacgtgtatatgtataacatgaggaatgtgattgat 23865727  T
Q  350 gtatgtgcataattataattaattgtgtatgttctggattgttagaattttcggagtagtaagtc-atatgaaatatatg-tgtagttgagttgtatgta 447  Q
    |||||||||||||||||| ||||||||||||||||| ||||||   | || |||||||||||||| ||||||||||||||   |||||||||||||||||    
T  23865726 gtatgtgcataattataaataattgtgtatgttctgaattgtt--gagttacggagtagtaagtcaatatgaaatatatgcattagttgagttgtatgta 23865629  T
Q  448 gatatacacaggtt 461  Q
    ||||||||||||||    
T  23865628 gatatacacaggtt 23865615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 344 - 461
Target Start/End: Original strand, 19902808 - 19902924
Alignment:
Q  344 attgatgtatgtgcataattataattaattgtgtatgttctggattgttagaattttcggagtagtaagtcatatgaaatatatgt-gtagttgagttgt 442  Q
    |||||||||||||||| ||||||| |||||||||||||||||||||||  || || | |||||| ||||||||||||||||||||| |||||||||||||    
T  19902808 attgatgtatgtgcatgattataaataattgtgtatgttctggattgtc-gagttgt-ggagtattaagtcatatgaaatatatgtagtagttgagttgt 19902905  T
Q  443 atgtagatatacacaggtt 461  Q
    |||||||||||||||||||    
T  19902906 atgtagatatacacaggtt 19902924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 13 - 136
Target Start/End: Original strand, 14057148 - 14057271
Alignment:
Q  13 gaacctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagt 112  Q
    ||||| ||||| |||||||| |||||||||||  | ||||||||||||||||||| | ||||||| |||||||||| |||||| |||||||||||||||     
T  14057148 gaacccgtgagtgaaaaaccattttgattctgccataagttcgctcaagcgaaccgtcagcgagcggaacccagactttctgtgagccggtcgcttaagc 14057247  T
Q  113 gaactatctgtcgcttaagcgaag 136  Q
    || ||| | |||||||||||||||    
T  14057248 gagctagccgtcgcttaagcgaag 14057271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 13 - 136
Target Start/End: Complemental strand, 25111508 - 25111385
Alignment:
Q  13 gaacctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagt 112  Q
    ||||| || ||||||||||| |||||||||||  ||||||||||||||||||||| | ||||||| |||||||||| |||||| || ||||||||||||     
T  25111508 gaacccgtaagcgaaaaaccattttgattctgccagaagttcgctcaagcgaaccgtcagcgagcggaacccagactttctgtgagtcggtcgcttaagc 25111409  T
Q  113 gaactatctgtcgcttaagcgaag 136  Q
    |||||  | |||||||||||||||    
T  25111408 gaactggccgtcgcttaagcgaag 25111385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 335 - 390
Target Start/End: Original strand, 19987990 - 19988045
Alignment:
Q  335 ttgaatgaaattgatgtatgtgcataattataattaattgtgtatgttctggattg 390  Q
    |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||    
T  19987990 ttgaatgaaattgatgtatgagcataattgtaattaattgtgtatgttctggattg 19988045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 58 - 350
Target Start/End: Complemental strand, 18613697 - 18613409
Alignment:
Q  58 caagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaag-tgagccttagtcagcctctt 156  Q
    |||||||||| | ||||||| ||||||  ||  ||||||||| ||||||||||| |||| | | ||||||||||||||| ||| |||||||| ||| | |    
T  18613697 caagcgaaccgttagcgagcggaaccccaactctctgtaagcaggtcgcttaagcgaaccagccgtcgcttaagcgaagatga-ccttagtcggccac-t 18613600  T
Q  157 tttgaatttttgcttcgtgcacgagggga-cttcttgagcattctaaaatgtttcctttaacttgtataacccttgtataggtatcagaatcctactaga 255  Q
    ||||||  ||||| |||||||| |||||| | |||||||||||  |||||||| | || ||||||||||||| || ||||   | | |||||||||| ||    
T  18613599 tttgaa-ctttgcctcgtgcactaggggatcctcttgagcatttaaaaatgttcctttcaacttgtataacctttatatataca-ctgaatcctact-ga 18613503  T
Q  256 acaagctggtgatcgaattggttgatgttagtgaatttttgagatgattgagtatgaaatcaagtgaatatataatttattgaatgaaattgatg 350  Q
    |  |  |||| |||||||| |||||  |||||||| ||| ||||||||||||||||||| || ||||| ||||| |   ||||||||| ||||||    
T  18613502 aacacttggtaatcgaattagttgagtttagtgaa-tttggagatgattgagtatgaaaccatgtgaacatatactacgttgaatgaacttgatg 18613409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 60 - 186
Target Start/End: Original strand, 24321252 - 24321376
Alignment:
Q  60 agcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctcttttt 159  Q
    ||||| || ||||||| | |||||||||||| |||||||| ||||||||||| |||||| | |||||||||||||| ||||  |||| |||||| ||| |    
T  24321252 agcgacccgtaagcgaactgaacccagacctactgtaagctggtcgcttaagcgaactagccgtcgcttaagcgaactgagtgttagacagcct-tttct 24321350  T
Q  160 gaatttttgcttcgtgcacgaggggac 186  Q
    ||| | ||||||||| ||| |||||||    
T  24321351 gaa-tcttgcttcgtacactaggggac 24321376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 66 - 235
Target Start/End: Complemental strand, 21931187 - 21931018
Alignment:
Q  66 ccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttag-tcagcctctttttgaatt 164  Q
    |||| |||||||||||| |  ||  |||||||| ||||||||||||||||| | |  ||||||||||||||   ||||| | |||||| ||||||||  |    
T  21931187 cccttagcgagcagaacaccaactctctgtaagtcggtcgcttaagtgaaccagccttcgcttaagcgaagaaggcctttggtcagccactttttga--t 21931090  T
Q  165 tttgcttcgtgcacgagggga--cttcttgagcattctaaaatgtttcctttaacttgtataacccttgtata 235  Q
    |||||||| | ||| |||| |  | ||| ||||||||||||||||||| || ||||||||||||| |||||||    
T  21931089 tttgcttcctccactagggaatccatct-gagcattctaaaatgtttctttcaacttgtataacctttgtata 21931018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 369 - 460
Target Start/End: Complemental strand, 17053870 - 17053780
Alignment:
Q  369 taattgtgtatgttctggattgttagaattttcggagtagtaagtcatatgaaatatatgt-gtagttgagttgtatgtagatatacacaggt 460  Q
    |||||||||| || |||||||||| || || | ||||||||| ||||||||| | |||||| || || |||||||||||||||||||||||||    
T  17053870 taattgtgtaagt-ctggattgtttgagttgt-ggagtagtatgtcatatgatacatatgtagtggtcgagttgtatgtagatatacacaggt 17053780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 67
Target Start/End: Complemental strand, 17054060 - 17054009
Alignment:
Q  16 cctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaacc 67  Q
    ||||||||||||||||| |||| |||||||   |||||||||||||||||||    
T  17054060 cctgtgagcgaaaaaccattttcattctgtccaaagttcgctcaagcgaacc 17054009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 403 - 457
Target Start/End: Complemental strand, 21282300 - 21282245
Alignment:
Q  403 gagtagtaagtcatatgaa-atatatgtgtagttgagttgtatgtagatatacaca 457  Q
    |||| |||||||||||| | |||||||| | |||||||||||||||||||||||||    
T  21282300 gagttgtaagtcatatgtacatatatgtatggttgagttgtatgtagatatacaca 21282245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 336 - 386
Target Start/End: Original strand, 20005423 - 20005473
Alignment:
Q  336 tgaatgaaattgatgtatgtgcataattataattaattgtgtatgttctgg 386  Q
    |||||||| ||||||||||||||| ||||| ||| ||||||||| ||||||    
T  20005423 tgaatgaacttgatgtatgtgcatgattatgattgattgtgtattttctgg 20005473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 433 - 461
Target Start/End: Complemental strand, 23825333 - 23825305
Alignment:
Q  433 gttgagttgtatgtagatatacacaggtt 461  Q
    |||||||||||||||||||||||||||||    
T  23825333 gttgagttgtatgtagatatacacaggtt 23825305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 67
Target Start/End: Complemental strand, 23866078 - 23866030
Alignment:
Q  19 gtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaacc 67  Q
    |||| ||||||||| ||||||||||||   |||||||||||||||||||    
T  23866078 gtgatcgaaaaaccattttgattctgtccaaagttcgctcaagcgaacc 23866030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 433 - 461
Target Start/End: Original strand, 30766917 - 30766945
Alignment:
Q  433 gttgagttgtatgtagatatacacaggtt 461  Q
    |||||||||||||||||||||||||||||    
T  30766917 gttgagttgtatgtagatatacacaggtt 30766945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1773 (Bit Score: 98; Significance: 4e-48; HSPs: 2)
Name: scaffold1773
Description:

Target: scaffold1773; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 60 - 329
Target Start/End: Complemental strand, 592 - 324
Alignment:
Q  60 agcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctcttttt 159  Q
    ||||| || ||||||| | |||||||||||| |||||||| ||||||||||| |||||| | ||||||||||||||||||| |||||||||||| ||| |    
T  592 agcgacccgtaagcgaactgaacccagacctactgtaagctggtcgcttaagcgaactagccgtcgcttaagcgaagtgagtcttagtcagcct-tttct 494  T
Q  160 gaatttttgcttcgtgcacgaggggacttcttgagcattctaaaatgtttcctttaacttgtataacccttgtataggtatcagaatcctactagaacaa 259  Q
    ||| | || ||| ||||| ||||||||||||||||||||||| ||  |   |||||||| |||||||| | || |||||| | |||||||| ||||||||    
T  493 gaactattacttagtgcatgaggggacttcttgagcattctataacttcctctttaactagtataaccttggtgtaggtaaccgaatcctattagaacaa 394  T
Q  260 gctggtgatcgaattggttgatgttagtgaatttttgagatgattgagtatgaaatcaagtgaatatata 329  Q
    ||  ||||| | |||| ||| ||||||| ||| || |||||||| | |||||||| ||||||||||||||    
T  393 gccagtgattggattgattggtgttagtaaatgttggagatgatggtgtatgaaaacaagtgaatatata 324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1773; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 344 - 461
Target Start/End: Complemental strand, 269 - 153
Alignment:
Q  344 attgatgtatgtgcataattataattaattgtgtatgttctggattgttagaattttcggagtagtaagtcatatgaaatatatgtg-tagttgagttgt 442  Q
    |||||||| ||||||||||||||| |||||||||||||||||||||||| ||  | | ||||||||||||||||||||||||||||  ||||||||||||    
T  269 attgatgtgtgtgcataattataaataattgtgtatgttctggattgtt-gagctgt-ggagtagtaagtcatatgaaatatatgtaatagttgagttgt 172  T
Q  443 atgtagatatacacaggtt 461  Q
    |||||||||||||||||||    
T  171 atgtagatatacacaggtt 153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0247 (Bit Score: 97; Significance: 2e-47; HSPs: 1)
Name: scaffold0247
Description:

Target: scaffold0247; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 16 - 235
Target Start/End: Complemental strand, 10829 - 10610
Alignment:
Q  16 cctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaa 115  Q
    ||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| ||     
T  10829 cctgtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccctaagcgagcagaacccagacttactgtaagccggtcgcttaagcgag 10730  T
Q  116 ctatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggacttcttg-agcattctaaaatgtttccttt 214  Q
    ||| | ||||||||||||||||    ||||||||||| |||||||||  ||||| |||||||  ||||||   |||| ||||||  || ||||  | |||    
T  10729 ctagccgtcgcttaagcgaagttgatcttagtcagccactttttgaa-ctttgcctcgtgcattaggggatcccttgtagcatttaaacatgtccctttt 10631  T
Q  215 aacttgtataacccttgtata 235  Q
    |||||||||||||||| ||||    
T  10630 aacttgtataacccttatata 10610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0249 (Bit Score: 92; Significance: 2e-44; HSPs: 2)
Name: scaffold0249
Description:

Target: scaffold0249; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 241 - 392
Target Start/End: Original strand, 7517 - 7667
Alignment:
Q  241 cagaatcctactagaacaagctggtgatcgaattggttgatgttagtgaatttttgagatgattgagtatgaaatcaagtgaatatataatttattgaat 340  Q
    ||||||||||||| || |  | |||||||||||| ||||| ||||||||||||| |||||||||||||||||||||||||||||||||| | | ||||||    
T  7517 cagaatcctactaaaatactccggtgatcgaattagttga-gttagtgaattttggagatgattgagtatgaaatcaagtgaatatatagtatgttgaat 7615  T
Q  341 gaaattgatgtatgtgcataattataattaattgtgtatgttctggattgtt 392  Q
    |||||||||||||| ||||||||||||||||||| ||||||||||| |||||    
T  7616 gaaattgatgtatgagcataattataattaattgggtatgttctgggttgtt 7667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0249; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 401 - 457
Target Start/End: Original strand, 7742 - 7798
Alignment:
Q  401 cggagtagtaagtcatatgaaatatatgtgtagttgagttgtatgtagatatacaca 457  Q
    |||||| | ||||||||||||| |||||  | ||| |||||||||||||||||||||    
T  7742 cggagttgcaagtcatatgaaacatatgcattgttaagttgtatgtagatatacaca 7798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154 (Bit Score: 91; Significance: 7e-44; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 51 - 240
Target Start/End: Complemental strand, 30383 - 30194
Alignment:
Q  51 gttcgctcaagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcag 150  Q
    |||| |||||||||||| | |||||||  |||| | || |||||||||||||||||||||| || | | |  ||||||||||||||||||||||||||||    
T  30383 gttcactcaagcgaaccgtgagcgagcgaaacctaaactttctgtaagccggtcgcttaagcgagccaaccttcgcttaagcgaagtgagccttagtcag 30284  T
Q  151 cctctttttgaatttttgcttcgtgcacgaggggact-tcttgagcattctaaaatgtttcctttaacttgtataacccttgtataggtat 240  Q
    || |||| |||||||| ||||||||||| |||||||  | ||||||||||||||||||||| || ||||||||||||||||||||||||||    
T  30283 ccactttctgaatttt-gcttcgtgcactaggggacccttttgagcattctaaaatgtttctttcaacttgtataacccttgtataggtat 30194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 83; Significance: 4e-39; HSPs: 2)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 91 - 348
Target Start/End: Original strand, 81826 - 82082
Alignment:
Q  91 tctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttc 189  Q
    |||||||| |||||||||||| || | | | ||||||||||||||||  | ||||||||||| ||||||||| ||||||||||| ||| |||| | | |     
T  81826 tctgtaagtcggtcgcttaagcgagccagccgtcgcttaagcgaagtaggtcttagtcagccactttttgaa-ttttgcttcgtacaccagggaatcctt 81924  T
Q  190 ttgagcattctaaaatgtttcctttaacttgtataacccttgtataggtatcagaatcctactagaacaagctggtgatcgaattggttgatgttagtga 289  Q
    ||||||||| ||||||||||| || ||||||||||||||||||||| | | | ||||||||||  ||||   ||||  |||||||||||||  |||||||    
T  81925 ttgagcattttaaaatgtttctttcaacttgtataacccttgtatatgca-ctgaatcctacttaaacacattggtagtcgaattggttgaatttagtga 82023  T
Q  290 atttttgagatgattgagtatgaaatcaagtgaatatataatttattgaatgaaattga 348  Q
    ||||| || ||| |||||||||||| |||||||||||||| | | ||||||||| ||||    
T  82024 attttggatatgtttgagtatgaaaccaagtgaatatatattatgttgaatgaacttga 82082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 60 - 162
Target Start/End: Original strand, 80072 - 80174
Alignment:
Q  60 agcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctcttttt 159  Q
    ||||| || ||||||| | |||||||||||| |||||||  ||||||||||| || ||| | |||||||||||||| ||||  ||||||||||| ||| |    
T  80072 agcgacccgtaagcgaactgaacccagacctactgtaagatggtcgcttaagcgagctagccgtcgcttaagcgaactgagtgttagtcagcctttttct 80171  T
Q  160 gaa 162  Q
    |||    
T  80172 gaa 80174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 83; Significance: 4e-39; HSPs: 2)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 34 - 350
Target Start/End: Complemental strand, 116366 - 116052
Alignment:
Q  34 ttttgattctgttagaagttcgctcaagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcg 133  Q
    |||| ||||||| ||||||||||||||||||||| | |||||||  || ||  ||  ||||||||||||||||||||| |||| | | ||||||||||||    
T  116366 ttttcattctgtcagaagttcgctcaagcgaaccgttagcgagcgaaatcccaactctctgtaagccggtcgcttaagcgaaccagccgtcgcttaagcg 116267  T
Q  134 aag-tgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagcattctaaaatgtttcctttaacttgtataacccttg 231  Q
    ||| ||| ||||||||||||  ||||||||  ||||| |||||||| |||||| | | ||||| ||| ||||||||||| || ||| ||||||||| ||     
T  116266 aagatga-ccttagtcagccattttttgaa-ctttgcctcgtgcactaggggatccttttgagtattttaaaatgtttctttcaacctgtataaccttta 116169  T
Q  232 tataggtatcagaatcctactagaacaagctggtgatcgaattggttgatgttagtgaatttttgagatgattgagtatgaaatcaagtgaatatataat 331  Q
    ||||   | | ||||||||||  ||||   |||| |||||||| |||||  |||||||| |||||||||||||||||||||||||||||||| ||||| |    
T  116168 tatacaca-ctgaatcctactgaaacaccttggtaatcgaattagttgagtttagtgaa-ttttgagatgattgagtatgaaatcaagtgaacatatact 116071  T
Q  332 ttattgaatgaaattgatg 350  Q
     | ||||||||| ||||||    
T  116070 atgttgaatgaacttgatg 116052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 47 - 235
Target Start/End: Original strand, 129204 - 129393
Alignment:
Q  47 agaagttcgctcaagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttag 146  Q
    ||||||||||| ||||||||| | ||||||| ||||||  || |||||| ||||||||||||||| || | | | |||||||||||||||   | |||||    
T  129204 agaagttcgcttaagcgaaccgttagcgagcggaaccccaactttctgtgagccggtcgcttaagcgagccagccgtcgcttaagcgaagaaggtcttag 129303  T
Q  147 tcagcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagca-ttctaaaatgtttcctttaacttgtataacccttgtata 235  Q
    |||||| ||||||||| ||||||||||||||| |||||| | | ||||||| || | |||||||||||| ||||||||||||| |||||||    
T  129304 tcagccactttttgaa-ttttgcttcgtgcactaggggatccttttgagcatttttgaaatgtttccttcaacttgtataacctttgtata 129393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 82; Significance: 2e-38; HSPs: 4)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 47 - 375
Target Start/End: Complemental strand, 65592 - 65265
Alignment:
Q  47 agaagttcgctcaagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttag 146  Q
    ||||||||||| || |||||| | ||||||| ||||||  ||  ||||||||||||||||||||| |||| | | ||| |||||||| ||    ||||||    
T  65592 agaagttcgcttaaccgaaccgttagcgagcggaaccccaactctctgtaagccggtcgcttaagcgaaccagccgtcacttaagcggagaagaccttag 65493  T
Q  147 tcagcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagcattctaaaatgtttcctttaacttgtataacccttgtataggtatcagaa 245  Q
    |||||| ||||||||| |||||| |||||||| |||||| | | |||| |||| ||||||||||| || ||||||||||||  || |||| | | | |||    
T  65492 tcagccactttttgaa-ttttgcctcgtgcactaggggatccttttgaacattttaaaatgtttctttcaacttgtataacttttatatatgca-ctgaa 65395  T
Q  246 tcctactagaacaagctggtgatcgaattggttgatgttagtgaatttttgagatgattgagtatgaaatcaagtgaatatataatttattgaatgaaat 345  Q
    |||||||| ||||   |||| |||||||||||| |  |||||||||||| ||  ||||||||||||||| |||||||||||||| | | ||||||||| |    
T  65394 tcctactaaaacacattggtaatcgaattggttaagtttagtgaattttggatttgattgagtatgaaaccaagtgaatatatactatgttgaatgaact 65295  T
Q  346 tgatgtatgtgcataattataattaattgt 375  Q
    ||||| ||  | || ||||| |||||||||    
T  65294 tgatgcattagtatgattattattaattgt 65265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 267 - 329
Target Start/End: Complemental strand, 1336 - 1274
Alignment:
Q  267 atcgaattggttgatgttagtgaatttttgagatgattgagtatgaaatcaagtgaatatata 329  Q
    ||||||||||||||  ||||||| |||| || |||||||||||||||| |||||||| |||||    
T  1336 atcgaattggttgaatttagtgagttttggatatgattgagtatgaaaccaagtgaacatata 1274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 433 - 461
Target Start/End: Original strand, 46947 - 46975
Alignment:
Q  433 gttgagttgtatgtagatatacacaggtt 461  Q
    |||||||||||||||||||||||||||||    
T  46947 gttgagttgtatgtagatatacacaggtt 46975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 433 - 461
Target Start/End: Original strand, 52352 - 52380
Alignment:
Q  433 gttgagttgtatgtagatatacacaggtt 461  Q
    |||||||||||||||||||||||||||||    
T  52352 gttgagttgtatgtagatatacacaggtt 52380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 80; Significance: 2e-37; HSPs: 27)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 16 - 460
Target Start/End: Complemental strand, 23528099 - 23527632
Alignment:
Q  16 cctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaaccct-----------aagcgagcagaacccaga-ccttctgtaagccggt 103  Q
    ||||||||||||||||| |||| |||||||   ||||||||||||||||||| |           |||||| | ||||||||| ||| |||||||| |||    
T  23528099 cctgtgagcgaaaaaccattttcattctgtccaaagttcgctcaagcgaaccgtgagcgacccgtaagcgaactgaacccagaacctactgtaagctggt 23528000  T
Q  104 cgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggacttcttgagcattctaaa 203  Q
    |||||||| |||||| | |||||||||||||||||| ||||| ||||||| ||| |||| | |||||| ||||| ||||||||||||||||| ||||  |    
T  23527999 cgcttaagcgaactagccgtcgcttaagcgaagtgaaccttaatcagcct-tttctgaactgttgcttagtgcatgaggggacttcttgagcgttcttta 23527901  T
Q  204 atgtttcctttaacttgtataacccttgtataggtatcagaatcctactagaacaagctggtgatcgaat-tggttgatgttagtgaatttttgagatga 302  Q
    |  |   |||||||| |||||||||| || |||||| |  ||||||| |||||||| | |||| | | || || ||| ||||||| ||| || ||||||     
T  23527900 acttcctctttaactagtataaccctggtgtaggtaaccaaatcctattagaacaatccggtgtttggatatgattggtgttagtaaatgttggagatgt 23527801  T
Q  303 ttgagtatgaaatcaagtga------------atatataatttattgaatgaaattgatgtatgtgcataattataattaattgtgtatgttctggattg 390  Q
    ||| || ||||| |||||||            ||||||||  | | |||||  |||||||||||||||||||||||| |||||||||  | ||||||||     
T  23527800 ttgggtgtgaaagcaagtgaatatgtatgtatatatataacatgtggaatgtgattgatgtatgtgcataattataaataattgtgtcag-tctggatta 23527702  T
Q  391 ttagaattttcggagtagtaagtcatatgaaatatatgt-gtagttgagttgtatgtagatatacacaggt 460  Q
    || || || | ||||||||||||||||||| | |||||| || || |||||||||||||||||||||||||    
T  23527701 tttgagttgt-ggagtagtaagtcatatgatacatatgtagtggtcgagttgtatgtagatatacacaggt 23527632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 335 - 392
Target Start/End: Original strand, 22232436 - 22232493
Alignment:
Q  335 ttgaatgaaattgatgtatgtgcataattataattaattgtgtatgttctggattgtt 392  Q
    |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||    
T  22232436 ttgaatgaaattgatgtatgagcataattataattaatcgtgtatgttctggattgtt 22232493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 58 - 222
Target Start/End: Original strand, 18408521 - 18408685
Alignment:
Q  58 caagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcg-aagtgagccttagtcagcctctt 156  Q
    |||||||||| | ||||||| ||||||  || ||||||||||||||||||||||  ||||| | |||||||||||| || ||| |||||||||||| |||    
T  18408521 caagcgaaccgttagcgagcggaaccccaactttctgtaagccggtcgcttaagcaaactagccgtcgcttaagcgaaaatga-ccttagtcagccactt 18408619  T
Q  157 tttgaatttttgcttcgtgcacgaggggact-tcttgagcattctaaaatgtttcctttaacttgta 222  Q
    ||||||  ||||| |||||||| |||||| | | ||||||||| | ||||||| | || ||||||||    
T  18408620 tttgaa-ctttgcctcgtgcactaggggattcttttgagcatttttaaatgttcctttcaacttgta 18408685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 60 - 140
Target Start/End: Complemental strand, 19236374 - 19236294
Alignment:
Q  60 agcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgag 140  Q
    ||||| || ||||||| | |||||||||||| |||||||| ||||||||||| |||||| | |||||||||||||| ||||    
T  19236374 agcgacccataagcgaactgaacccagacctactgtaagctggtcgcttaagcgaactagccgtcgcttaagcgaactgag 19236294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 52 - 111
Target Start/End: Original strand, 22439310 - 22439369
Alignment:
Q  52 ttcgctcaagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaag 111  Q
    |||||| ||| ||||| |||||||||||||||||||| | ||||||||||||||||||||    
T  22439310 ttcgcttaagtgaaccttaagcgagcagaacccagacttactgtaagccggtcgcttaag 22439369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 79 - 186
Target Start/End: Complemental strand, 22460611 - 22460506
Alignment:
Q  79 gaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcac 178  Q
    |||||||||||| |||||||| ||||||||||| |||||| | |||||||||||||| ||||  |||| |||||| ||| |||| | ||||||||| |||    
T  22460611 gaacccagacctactgtaagctggtcgcttaagcgaactagccgtcgcttaagcgaactgagtgttagacagcct-tttctgaa-tcttgcttcgtacac 22460514  T
Q  179 gaggggac 186  Q
     |||||||    
T  22460513 taggggac 22460506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 78 - 186
Target Start/End: Complemental strand, 34829539 - 34829432
Alignment:
Q  78 agaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgca 177  Q
    |||||||  ||||| ||| ||| ||||||||||| || ||| |  ||||||||||||| ||||||||||||| ||| ||| ||||  |||||||||||||    
T  34829539 agaaccccaaccttttgtgagctggtcgcttaagcgagctacccttcgcttaagcgaactgagccttagtcaacctttttctgaa-ctttgcttcgtgca 34829441  T
Q  178 cgaggggac 186  Q
    | |||||||    
T  34829440 ctaggggac 34829432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 60 - 186
Target Start/End: Complemental strand, 22467254 - 22467130
Alignment:
Q  60 agcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctcttttt 159  Q
    ||||| || ||||||| | |||||||||||| |||||||| ||||| ||||| |||||| | |||||||||||| | ||||  |||| |||||| ||| |    
T  22467254 agcgacccataagcgaactgaacccagacctactgtaagctggtcggttaagcgaactagccgtcgcttaagcgtactgagtgttagacagcct-tttct 22467156  T
Q  160 gaatttttgcttcgtgcacgaggggac 186  Q
    ||| | ||||||||| ||| |||||||    
T  22467155 gaa-tcttgcttcgtacactaggggac 22467130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 87 - 178
Target Start/End: Complemental strand, 20781192 - 20781102
Alignment:
Q  87 accttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcac 178  Q
    ||||| ||| ||| ||||||||||| || ||| | |||||||||||||| | ||  ||||||||||| ||| |||| |||||||||||||||    
T  20781192 accttgtgtgagctggtcgcttaagcgagctacccgtcgcttaagcgaactaagtgttagtcagcctttttctgaa-ttttgcttcgtgcac 20781102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 283 - 350
Target Start/End: Original strand, 23112480 - 23112546
Alignment:
Q  283 ttagtgaatttttgagatgattgagtatgaaatcaagtgaatatataatttattgaatgaaattgatg 350  Q
    |||||||||||  ||||||||||||||||||| |||||||| ||||| | | ||||||||| ||||||    
T  23112480 ttagtgaatttg-gagatgattgagtatgaaaccaagtgaacatatactatgttgaatgaacttgatg 23112546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 429 - 460
Target Start/End: Original strand, 37805280 - 37805311
Alignment:
Q  429 tgtagttgagttgtatgtagatatacacaggt 460  Q
    ||||||||||||||||||||||||||||||||    
T  37805280 tgtagttgagttgtatgtagatatacacaggt 37805311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 66
Target Start/End: Complemental strand, 20819689 - 20819639
Alignment:
Q  16 cctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaac 66  Q
    ||||||||||||||||| ||||||||||||   || |||||||||||||||    
T  20819689 cctgtgagcgaaaaaccattttgattctgtccaaatttcgctcaagcgaac 20819639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 66
Target Start/End: Complemental strand, 20826789 - 20826739
Alignment:
Q  16 cctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaac 66  Q
    ||||||||||||||||| ||||||||||||   || |||||||||||||||    
T  20826789 cctgtgagcgaaaaaccattttgattctgtccaaatttcgctcaagcgaac 20826739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 408 - 457
Target Start/End: Complemental strand, 10035354 - 10035305
Alignment:
Q  408 gtaagtcatatgaaatatatgtgtagttgagttgtatgtagatatacaca 457  Q
    ||||||||||| | |||||||  | |||||||||||||||||||||||||    
T  10035354 gtaagtcatattatatatatgcattgttgagttgtatgtagatatacaca 10035305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 408 - 457
Target Start/End: Complemental strand, 18819145 - 18819096
Alignment:
Q  408 gtaagtcatatgaaatatatgtgtagttgagttgtatgtagatatacaca 457  Q
    ||||||||||| | |||||||  | |||||||||||||||||||||||||    
T  18819145 gtaagtcatattatatatatgcattgttgagttgtatgtagatatacaca 18819096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 408 - 457
Target Start/End: Original strand, 21901800 - 21901849
Alignment:
Q  408 gtaagtcatatgaaatatatgtgtagttgagttgtatgtagatatacaca 457  Q
    ||||||||||| | |||||||  | |||||||||||||||||||||||||    
T  21901800 gtaagtcatattatatatatgcattgttgagttgtatgtagatatacaca 21901849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 433 - 461
Target Start/End: Original strand, 1857471 - 1857499
Alignment:
Q  433 gttgagttgtatgtagatatacacaggtt 461  Q
    |||||||||||||||||||||||||||||    
T  1857471 gttgagttgtatgtagatatacacaggtt 1857499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 205 - 237
Target Start/End: Complemental strand, 20819488 - 20819456
Alignment:
Q  205 tgtttcctttaacttgtataacccttgtatagg 237  Q
    ||||||||||| |||||||||||||||||||||    
T  20819488 tgtttcctttagcttgtataacccttgtatagg 20819456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 205 - 237
Target Start/End: Complemental strand, 20826588 - 20826556
Alignment:
Q  205 tgtttcctttaacttgtataacccttgtatagg 237  Q
    ||||||||||| |||||||||||||||||||||    
T  20826588 tgtttcctttagcttgtataacccttgtatagg 20826556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 433 - 461
Target Start/End: Original strand, 21675439 - 21675467
Alignment:
Q  433 gttgagttgtatgtagatatacacaggtt 461  Q
    |||||||||||||||||||||||||||||    
T  21675439 gttgagttgtatgtagatatacacaggtt 21675467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 409 - 457
Target Start/End: Original strand, 21869490 - 21869538
Alignment:
Q  409 taagtcatatgaaatatatgtgtagttgagttgtatgtagatatacaca 457  Q
    |||||||||| | |||||||  | |||||||||||||||||||||||||    
T  21869490 taagtcatattatatatatgcattgttgagttgtatgtagatatacaca 21869538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 409 - 457
Target Start/End: Original strand, 21873770 - 21873818
Alignment:
Q  409 taagtcatatgaaatatatgtgtagttgagttgtatgtagatatacaca 457  Q
    |||||||||| | |||||||  | |||||||||||||||||||||||||    
T  21873770 taagtcatattatatatatgcattgttgagttgtatgtagatatacaca 21873818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 60 - 140
Target Start/End: Original strand, 28889978 - 28890058
Alignment:
Q  60 agcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgag 140  Q
    ||||| || ||||||| | |||||||||||| |||||||  ||||||||||| ||  || | |||||||||||||| ||||    
T  28889978 agcgacccgtaagcgaactgaacccagacctactgtaagttggtcgcttaagcgagatagccgtcgcttaagcgaactgag 28890058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 60 - 140
Target Start/End: Original strand, 28896682 - 28896762
Alignment:
Q  60 agcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgag 140  Q
    ||||| || ||||||| | |||||||||||| |||||||  ||||||||||| ||  || | |||||||||||||| ||||    
T  28896682 agcgacccgtaagcgaactgaacccagacctactgtaagttggtcgcttaagcgagatagccgtcgcttaagcgaactgag 28896762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 60 - 140
Target Start/End: Original strand, 28909930 - 28910010
Alignment:
Q  60 agcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgag 140  Q
    ||||| || ||||||| | |||||||||||| |||||||  ||||||||||| ||  || | |||||||||||||| ||||    
T  28909930 agcgacccgtaagcgaactgaacccagacctactgtaagttggtcgcttaagcgagatagccgtcgcttaagcgaactgag 28910010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 60 - 140
Target Start/End: Original strand, 28931622 - 28931702
Alignment:
Q  60 agcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgag 140  Q
    ||||| || ||||||| | |||||||||||| |||||||  ||||||||||| ||  || | |||||||||||||| ||||    
T  28931622 agcgacccgtaagcgaactgaacccagacctactgtaagttggtcgcttaagcgagatagccgtcgcttaagcgaactgag 28931702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 60 - 140
Target Start/End: Original strand, 28946325 - 28946405
Alignment:
Q  60 agcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgag 140  Q
    ||||| || ||||||| | |||||||||||| |||||||  ||||||||||| ||  || | |||||||||||||| ||||    
T  28946325 agcgacccgtaagcgaactgaacccagacctactgtaagttggtcgcttaagcgagatagccgtcgcttaagcgaactgag 28946405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0461 (Bit Score: 66; Significance: 5e-29; HSPs: 2)
Name: scaffold0461
Description:

Target: scaffold0461; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 13 - 185
Target Start/End: Original strand, 581 - 752
Alignment:
Q  13 gaacctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagt 112  Q
    ||||| || ||||||||| |  ||| ||||||| ||||||||||||||||||||| | |||||||  |||||  || ||||||||||||||||||||||     
T  581 gaacccgtaagcgaaaaatcaatttcattctgtcagaagttcgctcaagcgaaccgtcagcgagcgaaaccccaactttctgtaagccggtcgcttaagc 680  T
Q  113 gaactatctgtcgcttaagcgaag-tgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga 185  Q
    |||||| | ||||||||||||||| ||| |||||||||||| |||||||||  ||||| |||||||| ||||||    
T  681 gaactagccgtcgcttaagcgaagatga-ccttagtcagccactttttgaa-ctttgcgtcgtgcactagggga 752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0461; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 101 - 185
Target Start/End: Original strand, 7605 - 7688
Alignment:
Q  101 ggtcgcttaagtgaactatctgtcgcttaagcgaag-tgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga 185  Q
    ||||||||||| |||||| | ||||||||||||||| ||| |||||||||||| |||||||||  ||||| |||||||| ||||||    
T  7605 ggtcgcttaagcgaactagccgtcgcttaagcgaagatga-ccttagtcagccactttttgaa-ctttgcgtcgtgcactagggga 7688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0139 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: scaffold0139
Description:

Target: scaffold0139; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 12 - 350
Target Start/End: Original strand, 15521 - 15856
Alignment:
Q  12 agaacctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaag 111  Q
    |||||| || ||||||||| | |||  ||| ||| ||||||||||||||||||||| | ||||| |  |||||| ||  ||| |||| ||||||||||||    
T  15521 agaacccgtaagcgaaaaatcatttccattatgtcagaagttcgctcaagcgaaccgttagcgaacgaaacccaaactctctataagacggtcgcttaag 15620  T
Q  112 tgaactatctgtcgcttaagcgaag-tgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagcattctaaaatgttt 209  Q
     |||| | | ||||||||||||||| ||| |||||||||||| ||||| ||| ||| || |||||||| ||| || | | |||||||||  |||||||||    
T  15621 cgaaccaaccgtcgcttaagcgaagatga-ccttagtcagccactttt-gaacttt-gcctcgtgcactaggagatccttttgagcatttaaaaatgttt 15717  T
Q  210 cctttaacttgtataacccttgtataggtatcagaatcctactagaacaagctggtgatcgaattggttgatgttagtgaatttttgagatgattgagta 309  Q
    | || ||||||||||||| || |||| | | | ||||| ||||  ||||   |||| |||||||| |||||  |||||||| ||| ||||||||||||||    
T  15718 ctttcaacttgtataacctttatatatgca-ctgaatcatactgaaacactttggtaatcgaattagttgagtttagtgaa-tttggagatgattgagta 15815  T
Q  310 tgaaatcaagtgaatatataatttattgaatgaaattgatg 350  Q
    ||||| |||||||| ||||| | | ||||||||| ||||||    
T  15816 tgaaaccaagtgaacatatactatgttgaatgaacttgatg 15856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 19 - 152
Target Start/End: Original strand, 14977 - 15121
Alignment:
Q  19 gtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaaccct-----------aagcgagcagaacccagaccttctgtaagccggtcgct 107  Q
    |||||||||||||| |||||||||||| ||||||||||||||||||||| |           |||||||| |||||||||| | ||||||||||||||||    
T  14977 gtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccagacttactgtaagccggtcgct 15076  T
Q  108 taagtgaactatctgtcgcttaagcgaagtgagccttagtcagcc 152  Q
    |||| |||||| | |||||||||||||||||  ||||||||||||    
T  15077 taagcgaactagccgtcgcttaagcgaagtggaccttagtcagcc 15121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0138 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: scaffold0138
Description:

Target: scaffold0138; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 91 - 235
Target Start/End: Complemental strand, 1261 - 1117
Alignment:
Q  91 tctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttc 189  Q
    ||||| ||||||||||||||| || | | | ||||||||||||||| | | ||||||||||| ||||||||| ||||||||||||||| |||||| | |     
T  1261 tctgtgagccggtcgcttaagcgagccagccgtcgcttaagcgaagagggtcttagtcagccactttttgaa-ttttgcttcgtgcactaggggatcctt 1163  T
Q  190 ttgagcattctaaaatgtttcctttaacttgtataacccttgtata 235  Q
    ||||||||| ||||||||||| || ||||||||||||| |||||||    
T  1162 ttgagcattttaaaatgtttctttcaacttgtataacctttgtata 1117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 1e-26; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 13 - 185
Target Start/End: Complemental strand, 18712270 - 18712098
Alignment:
Q  13 gaacctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagt 112  Q
    ||||| || ||||||||| |  ||| ||||||| ||||||||||| ||||| ||| | ||||||| ||||||  || |||||||||| |||||||||||     
T  18712270 gaacccgtaagcgaaaaatcaatttcattctgtcagaagttcgcttaagcgtaccgttagcgagcggaaccccaactttctgtaagctggtcgcttaagc 18712171  T
Q  113 gaactatctgtcgcttaagcgaag-tgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga 185  Q
    |||||| | ||||||||||||||| ||| |||||||||||| | ||||||| |||||| |||||||| ||||||    
T  18712170 gaactagccgtcgcttaagcgaagatga-ccttagtcagccaccttttgaacttttgcctcgtgcactagggga 18712098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 344 - 460
Target Start/End: Complemental strand, 41111112 - 41110997
Alignment:
Q  344 attgatgtatgtgcataattataattaattgtgtatgttctggattgttagaattttcggagtagtaagtcatatgaaatatatgt-gtagttgagttgt 442  Q
    |||||||||||||||||||||||| |||||||||| | ||||||||||| || || | ||||||||||||||||||| | |||||| || || |||||||    
T  41111112 attgatgtatgtgcataattataaataattgtgtaag-tctggattgtttgagttgt-ggagtagtaagtcatatgatacatatgtagtggtcgagttgt 41111015  T
Q  443 atgtagatatacacaggt 460  Q
    ||||||||||||||||||    
T  41111014 atgtagatatacacaggt 41110997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 60 - 200
Target Start/End: Complemental strand, 41111354 - 41111214
Alignment:
Q  60 agcgaaccctaagcgagcagaacccaga-ccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttt 158  Q
    ||||| || ||||||| | ||||||||| ||| |||||||| ||||||||||| |||||| | |||||||||||||||||| ||||| ||||||| |||     
T  41111354 agcgacccgtaagcgaactgaacccagaacctactgtaagctggtcgcttaagcgaactagccgtcgcttaagcgaagtgaaccttaatcagcct-tttc 41111256  T
Q  159 tgaatttttgcttcgtgcacgaggggacttcttgagcattct 200  Q
    |||| | |||||| ||||| ||||||||||||||||| ||||    
T  41111255 tgaactgttgcttagtgcatgaggggacttcttgagcgttct 41111214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 335 - 392
Target Start/End: Original strand, 20941657 - 20941714
Alignment:
Q  335 ttgaatgaaattgatgtatgtgcataattataattaattgtgtatgttctggattgtt 392  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  20941657 ttgaatgaaattgatgtatgagcataattataattaattgtgtatgttctggattgtt 20941714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 60 - 186
Target Start/End: Complemental strand, 21710292 - 21710167
Alignment:
Q  60 agcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctcttttt 159  Q
    |||||||| ||||||| | |||||||||||| |||||||| ||||||||||| |||||| | |||||||||||||| ||||  |||| |||||| |||      
T  21710292 agcgaaccataagcgaactgaacccagacctactgtaagctggtcgcttaagcgaactagccgtcgcttaagcgaactgagtgttagacagcctttttcc 21710193  T
Q  160 gaatttttgcttcgtgcacgaggggac 186  Q
    ||| | ||||||||| ||| |||||||    
T  21710192 gaa-tcttgcttcgtacactaggggac 21710167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 101 - 252
Target Start/End: Complemental strand, 19961622 - 19961472
Alignment:
Q  101 ggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagcattc 199  Q
    ||||||||||| || ||| |  ||||||||||||  ||||||||||||||||||| | ||||  |||||||||||||| |||||| | | ||||| |||     
T  19961622 ggtcgcttaagcgagctacccttcgcttaagcgagatgagccttagtcagcctctatctgaa-ctttgcttcgtgcactaggggacccttttgagtattt 19961524  T
Q  200 taaaatgtttcctttaacttgtataacccttgtataggtatcagaatcctact 252  Q
    | |  |||||| |||| ||||||||||||||||||||| |||| |||||||||    
T  19961523 ttacgtgtttcttttagcttgtataacccttgtataggcatca-aatcctact 19961472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 64 - 235
Target Start/End: Original strand, 22030333 - 22030504
Alignment:
Q  64 aaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaat 163  Q
    |||||| |||||||||||| |  ||  |||||||||| |||||||||| || | | |  ||||||||||||||   | ||||||||||| |||||| |||    
T  22030333 aacccttagcgagcagaacaccaactctctgtaagccagtcgcttaagcgagccagccttcgcttaagcgaagaaggtcttagtcagccacttttt-aat 22030431  T
Q  164 ttttgcttcgtgcacgagggga-cttcttgagcattctaaaatgtttcctttaacttgtataacccttgtata 235  Q
    ||||||||| ||||| |||  | | | |||||||||||| |||||||| || ||||||||||||| |||||||    
T  22030432 ttttgcttcttgcactaggaaatccttttgagcattctataatgtttctttcaacttgtataacctttgtata 22030504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 60 - 186
Target Start/End: Original strand, 20851714 - 20851838
Alignment:
Q  60 agcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctcttttt 159  Q
    ||||| || ||||||| | |||||||||||| |||||||| ||||||||||| |||||| | |||||||||||||| ||||  |||| |||||| ||| |    
T  20851714 agcgacccataagcgaactgaacccagacctactgtaagctggtcgcttaagcgaactagccgtcgcttaagcgaactgagtgttagacagcct-tttct 20851812  T
Q  160 gaatttttgcttcgtgcacgaggggac 186  Q
    ||| | ||||||||| ||| |||||||    
T  20851813 gaa-tcttgcttcgtacactaggggac 20851838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 60 - 186
Target Start/End: Complemental strand, 21705749 - 21705625
Alignment:
Q  60 agcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctcttttt 159  Q
    ||||| || ||||||| | |||||||||||| |||||||| ||||||||||| |||||| | |||||||||||||| ||||  |||| |||||| ||| |    
T  21705749 agcgacccgtaagcgaactgaacccagacctactgtaagctggtcgcttaagcgaactagccgtcgcttaagcgaactgagtgttagacagcct-tttct 21705651  T
Q  160 gaatttttgcttcgtgcacgaggggac 186  Q
    ||| | ||||||||| ||| |||||||    
T  21705650 gaa-tcttgcttcgtacactaggggac 21705625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 60 - 153
Target Start/End: Original strand, 20858341 - 20858434
Alignment:
Q  60 agcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcct 153  Q
    ||||| || ||||||| | |||||||||||| |||||||| ||||||||||| |||||| | |||||||||||||| ||||  |||| ||||||    
T  20858341 agcgacccgtaagcgaactgaacccagacctactgtaagctggtcgcttaagcgaactagccgtcgcttaagcgaactgagtgttagacagcct 20858434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 122 - 350
Target Start/End: Complemental strand, 11157554 - 11157328
Alignment:
Q  122 gtcgcttaagcgaag-tgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagcattctaaaatgtttcctttaactt 219  Q
    ||||||||||||||| ||| ||||||||| || ||||||||| ||| || |||||||  |||||| | | |||||||||  |||||||||| || |||||    
T  11157554 gtcgcttaagcgaagatga-ccttagtcaaccactttttgaacttt-gcctcgtgcattaggggatccttttgagcatttaaaaatgtttctttcaactt 11157457  T
Q  220 gtataacccttgtataggtatcagaatcctactagaacaagctggtgatcgaattggttgatgttagtgaatttttgagatgattgagtatgaaatcaag 319  Q
    ||||||||||| ||||   | |  |||||||||  ||||   |||| |||||||| || ||  |||||||| |||  |||||||||||||||||| ||||    
T  11157456 gtataacccttatatataca-ctaaatcctactgaaacactttggtaatcgaattagtcgagtttagtgaa-tttgaagatgattgagtatgaaaccaag 11157359  T
Q  320 tgaatatataatttattgaatgaaattgatg 350  Q
    |||| ||||| | | ||||||||| ||||||    
T  11157358 tgaacatatactatgttgaatgaacttgatg 11157328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 283 - 387
Target Start/End: Original strand, 20438224 - 20438327
Alignment:
Q  283 ttagtgaatttttgagatgattgagtatgaaatcaagtgaatatataatttattgaatgaaattgatgtatgtgcataattataattaattgtgtatgtt 382  Q
    |||||||||||  ||||||||||||||||||| |||||||| ||||| | | ||||||||| || ||| ||  |  | ||||| ||||||||||||| ||    
T  20438224 ttagtgaatttg-gagatgattgagtatgaaaccaagtgaacatatactatgttgaatgaactttatgcattagtttgattatgattaattgtgtatttt 20438322  T
Q  383 ctgga 387  Q
    |||||    
T  20438323 ctgga 20438327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 67
Target Start/End: Complemental strand, 41111407 - 41111358
Alignment:
Q  18 tgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaacc 67  Q
    ||||||||||||||| |||| |||||||   |||||||||||||||||||    
T  41111407 tgtgagcgaaaaaccattttcattctgtccaaagttcgctcaagcgaacc 41111358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 433 - 461
Target Start/End: Complemental strand, 21542265 - 21542237
Alignment:
Q  433 gttgagttgtatgtagatatacacaggtt 461  Q
    |||||||||||||||||||||||||||||    
T  21542265 gttgagttgtatgtagatatacacaggtt 21542237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 433 - 461
Target Start/End: Original strand, 42095871 - 42095899
Alignment:
Q  433 gttgagttgtatgtagatatacacaggtt 461  Q
    |||||||||||||||||||||||||||||    
T  42095871 gttgagttgtatgtagatatacacaggtt 42095899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0124 (Bit Score: 59; Significance: 8e-25; HSPs: 1)
Name: scaffold0124
Description:

Target: scaffold0124; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 13 - 162
Target Start/End: Original strand, 34861 - 35010
Alignment:
Q  13 gaacctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagt 112  Q
    ||||| || ||||||||| |  ||| ||||||| ||||||||||||||||||||| | ||||||| |||||   || ||||||||||||||||||||||     
T  34861 gaacccgtaagcgaaaaatcaatttcattctgtcagaagttcgctcaagcgaaccgtcagcgagcggaacctcaactttctgtaagccggtcgcttaagc 34960  T
Q  113 gaactatctgtcgcttaagcgaag-tgagccttagtcagcctctttttgaa 162  Q
    |||||| |  |||||||||||||| ||| |||||||||||| |||||||||    
T  34961 gaactagccatcgcttaagcgaagatga-ccttagtcagccactttttgaa 35010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0235 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: scaffold0235
Description:

Target: scaffold0235; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 26 - 185
Target Start/End: Original strand, 15475 - 15633
Alignment:
Q  26 aaaaaccgttttgattctgttagaagttcgctcaagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcg 125  Q
    ||||||| |||| ||||||  ||||||||||||||||||||| | ||||||| ||||||  || |||||| |||| ||||||||||||| ||| |  |||    
T  15475 aaaaaccattttcattctgccagaagttcgctcaagcgaaccgtcagcgagcggaaccccaactttctgtgagccagtcgcttaagtgagctagccatcg 15574  T
Q  126 cttaagcgaag-tgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga 185  Q
    ||||||||||| ||| |||||||||||| |||||||||  ||||| |||||||| ||||||    
T  15575 cttaagcgaagatga-ccttagtcagccactttttgaa-atttgcctcgtgcactagggga 15633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0235; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 26 - 162
Target Start/End: Original strand, 23192 - 23328
Alignment:
Q  26 aaaaaccgttttgattctgttagaagttcgctcaagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcg 125  Q
    ||||||| |||| ||||||  ||||||||||||||||||||| | ||||||  ||||||  || |||||| ||||||| || |||| || ||| | ||||    
T  23192 aaaaaccattttcattctgccagaagttcgctcaagcgaaccgtcagcgagttgaaccccaactttctgtgagccggttgcctaagcgagctagccgtcg 23291  T
Q  126 cttaagcgaag-tgagccttagtcagcctctttttgaa 162  Q
    ||||||||||| ||| |||||||||||| |||||||||    
T  23292 cttaagcgaagatga-ccttagtcagccactttttgaa 23328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 55; Significance: 2e-22; HSPs: 3)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 344 - 461
Target Start/End: Original strand, 174440 - 174557
Alignment:
Q  344 attgatgtatgtgcataattataattaattgtgtatgttctggattgttagaattttcggagtagtaagtcatatgaaatatatgt-gtagttgagttgt 442  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||| | | || ||||| |||||||||| ||||| ||||||  |||| || ||||    
T  174440 attgatgtatgtgcataattataaataattgtgtatgttctggattgtttg-agttgcggagcagtaagtcatttgaaaaatatgtaatagtcgaattgt 174538  T
Q  443 atgtagatatacacaggtt 461  Q
    ||||||| ||||| |||||    
T  174539 atgtagagatacaaaggtt 174557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 101 - 252
Target Start/End: Original strand, 493650 - 493800
Alignment:
Q  101 ggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagcattc 199  Q
    ||||||||||| || ||| |  ||||||||||||| ||||||||||||||||| ||| ||||   ||||||||||||| |||||| | | ||||| |||     
T  493650 ggtcgcttaagcgagctacccttcgcttaagcgaactgagccttagtcagcctttttctgaa-ccttgcttcgtgcactaggggacccttttgagtattt 493748  T
Q  200 taaaatgtttcctttaacttgtataacccttgtataggtatcagaatcctact 252  Q
    | ||||||||| |||| |||||||||| |||||||||| |||| |||||||||    
T  493749 ttaaatgtttcttttagcttgtataactcttgtataggcatca-aatcctact 493800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 91 - 235
Target Start/End: Complemental strand, 525205 - 525062
Alignment:
Q  91 tctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga--ctt 188  Q
    |||||||| |||||||||||| |||| | |  ||||||||||||||   ||||| ||||||| | ||||||  ||||| ||| ||||| |||| |  | |    
T  525205 tctgtaagacggtcgcttaagcgaaccagccttcgcttaagcgaagaaggccttggtcagccacattttga--ttttgtttcctgcactagggaatccat 525108  T
Q  189 cttgagcattctaaaatgtttcctttaacttgtataacccttgtata 235  Q
    || ||||||||| ||||||||| || ||||||||||||| |||||||    
T  525107 ct-gagcattctgaaatgtttctttcaacttgtataacctttgtata 525062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1061 (Bit Score: 54; Significance: 8e-22; HSPs: 1)
Name: scaffold1061
Description:

Target: scaffold1061; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 122 - 329
Target Start/End: Complemental strand, 1813 - 1607
Alignment:
Q  122 gtcgcttaagcgaag-tgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagcattctaaaatgtttcctttaactt 219  Q
    ||||||||||||||| ||| |||||||||||| ||||||||||||| || |||||||| |||||| | | ||||||||| ||||||||||| || |||||    
T  1813 gtcgcttaagcgaagatga-ccttagtcagccactttttgaatttt-gcctcgtgcactaggggatccttttgagcattttaaaatgtttctttcaactt 1716  T
Q  220 gtataacccttgtataggtatcagaatcctactagaacaagctggtgatcgaattggttgatgttagtgaatttttgagatgattgagtatgaaatcaag 319  Q
    |||| ||| || ||||     | |||||||||| |||||   |||| ||||| ||||||||  |||||||||||| || || | ||||||||||| ||||    
T  1715 gtatgacctttatatatacccctgaatcctact-gaacacattggtaatcgagttggttgaatttagtgaattttggatatcagtgagtatgaaaccaag 1617  T
Q  320 tgaatatata 329  Q
    ||||||||||    
T  1616 tgaatatata 1607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0317 (Bit Score: 54; Significance: 8e-22; HSPs: 1)
Name: scaffold0317
Description:

Target: scaffold0317; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 91 - 350
Target Start/End: Complemental strand, 799 - 542
Alignment:
Q  91 tctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaag-tgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-ctt 188  Q
    ||||||||||||||||||||| |||| | | ||||||||||||||| ||| |||||||||||| |||||||||  ||||| |||||||  |||||| | |    
T  799 tctgtaagccggtcgcttaagcgaaccagccgtcgcttaagcgaagatga-ccttagtcagccactttttgaa-ctttgcctcgtgcattaggggatcct 702  T
Q  189 cttgagcattctaaaatgtttcctttaacttgtataacccttgtataggtatcagaatcctactagaacaagctggtgatcgaattggttgatgttagtg 288  Q
     |||||||||  |||||||||| || || |||||||||| || |||| | | | ||||||||||  ||||   |||| |||||||| |||||  ||||||    
T  701 tttgagcattaaaaaatgtttctttcaatttgtataacctttatatatgca-ctgaatcctactgaaacactttggtaatcgaattagttgagtttagtg 603  T
Q  289 aatttttgagatgattgagtatgaaatcaagtgaatatataatttattgaatgaaattgatg 350  Q
    || |||  |||||||||||||| | | |||||||| ||||| | | ||||||||| ||||||    
T  602 aa-tttgaagatgattgagtatcataccaagtgaacatatactatgttgaatgaacttgatg 542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0310 (Bit Score: 54; Significance: 8e-22; HSPs: 1)
Name: scaffold0310
Description:

Target: scaffold0310; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 19 - 136
Target Start/End: Complemental strand, 7024 - 6907
Alignment:
Q  19 gtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaacta 118  Q
    ||||||||  |||| |||||||||||  || | || ||||||||||| | |||||||||||||||||||| | |||||||||||||||||||| || |||    
T  7024 gtgagcgaggaacctttttgattctgccaggaatttgctcaagcgaatcgtaagcgagcagaacccagacttactgtaagccggtcgcttaagcgagcta 6925  T
Q  119 tctgtcgcttaagcgaag 136  Q
     | |||||||||||||||    
T  6924 gccgtcgcttaagcgaag 6907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0077 (Bit Score: 53; Significance: 3e-21; HSPs: 3)
Name: scaffold0077
Description:

Target: scaffold0077; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 22 - 150
Target Start/End: Original strand, 4153 - 4281
Alignment:
Q  22 agcgaaaaaccgttttgattctgttagaagttcgctcaagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatct 121  Q
    |||||||||||  ||||||||||  |  |||||||||||||||||| ||| |||||||||||||||| | |||||||| | ||||||||| ||||||       
T  4153 agcgaaaaaccaatttgattctgccaagagttcgctcaagcgaaccgtaatcgagcagaacccagacttactgtaagctgatcgcttaagcgaactagac 4252  T
Q  122 gtcgcttaagcgaagtgagccttagtcag 150  Q
    ||||||||||||||||   ||||||||||    
T  4253 gtcgcttaagcgaagttgaccttagtcag 4281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0077; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 340 - 392
Target Start/End: Original strand, 17972 - 18024
Alignment:
Q  340 tgaaattgatgtatgtgcataattataattaattgtgtatgttctggattgtt 392  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  17972 tgaaattgatgtatgagcataattataattaattgtgtatgttctggattgtt 18024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0077; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 340 - 392
Target Start/End: Original strand, 23605 - 23657
Alignment:
Q  340 tgaaattgatgtatgtgcataattataattaattgtgtatgttctggattgtt 392  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  23605 tgaaattgatgtatgagcataattataattaattgtgtatgttctggattgtt 23657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0222 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: scaffold0222
Description:

Target: scaffold0222; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 58 - 222
Target Start/End: Complemental strand, 16247 - 16083
Alignment:
Q  58 caagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaag-tgagccttagtcagcctctt 156  Q
    |||||||||| | ||||||| ||||||  || |||||||||||||||||||||| || ||| | ||||||||||||||| ||| |||||||||||| |||    
T  16247 caagcgaaccgttagcgagcggaaccccaactttctgtaagccggtcgcttaagcgagctaaccgtcgcttaagcgaagatga-ccttagtcagccactt 16149  T
Q  157 tttgaatttttgcttcgtgcacgagggga-cttcttgagcattctaaaatgtttcctttaacttgta 222  Q
    ||||||  ||||| |||||||| |||||| | | ||||||||| | ||||||| | || ||||||||    
T  16148 tttgaa-ctttgcctcgtgcactaggggatccttttgagcatttttaaatgttcctttcaacttgta 16083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 60 - 186
Target Start/End: Original strand, 4253 - 4377
Alignment:
Q  60 agcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctcttttt 159  Q
    ||||| || ||||||| | |||||||||||| |||||||| ||||||||||| |||||| |  ||||||||||||| ||||| ||||||||||| ||| |    
T  4253 agcgacccgtaagcgaactgaacccagacctactgtaagctggtcgcttaagcgaactagccatcgcttaagcgaactgagcgttagtcagcct-tttct 4351  T
Q  160 gaatttttgcttcgtgcacgaggggac 186  Q
    ||| | ||||||||||||| |||||||    
T  4352 gaa-tcttgcttcgtgcactaggggac 4377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 50 - 350
Target Start/End: Original strand, 102489 - 102787
Alignment:
Q  50 agttcgctcaagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaag-tgagccttagtc 148  Q
    |||||||||||||||||| | ||||||| ||||||  || ||||||||| |||||||||||| |||| | |  |||||||||||||| ||| ||||||||    
T  102489 agttcgctcaagcgaaccgtcagcgagcggaaccccaactttctgtaagtcggtcgcttaagcgaaccagccatcgcttaagcgaagatga-ccttagtc 102587  T
Q  149 agcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagcattctaaaatgtttcctttaacttgtataacccttgtataggtatcagaatc 247  Q
     ||| |||||||||   |||| |||||||| |||||| | | ||||| ||| ||||| ||||| || ||| ||||||||| || ||||   | | || ||    
T  102588 ggccactttttgaa-ccttgcctcgtgcactaggggatccttttgagtattttaaaaggtttctttcaacctgtataacctttatatacaca-ctgagtc 102685  T
Q  248 ctactagaacaagctggtgatcgaattggttgatgttagtgaatttttgagatgattgagtatgaaatcaagtgaatatataatttattgaatgaaattg 347  Q
    ||||   ||||   |||| |||||||| |||||  ||||| || ||| ||||||||||||||||||| |||||||| ||||| | | ||||||||| |||    
T  102686 ctacagaaacaccttggtaatcgaattagttgagtttagt-aaatttggagatgattgagtatgaaaccaagtgaacatatactatgttgaatgaacttg 102784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0348 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: scaffold0348
Description:

Target: scaffold0348; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 335 - 392
Target Start/End: Original strand, 1527 - 1584
Alignment:
Q  335 ttgaatgaaattgatgtatgtgcataattataattaattgtgtatgttctggattgtt 392  Q
    |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||    
T  1527 ttgaatgaaattgatgtatgagcataattttaattaattgtgtatgttctggattgtt 1584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0348; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 402 - 457
Target Start/End: Complemental strand, 3163 - 3107
Alignment:
Q  402 ggagtagtaagtcatatgaa-atatatgtgtagttgagttgtatgtagatatacaca 457  Q
    ||||| ||||||||||||   |||||||| | |||||||||||||||||||||||||    
T  3163 ggagttgtaagtcatatgtgcatatatgtatggttgagttgtatgtagatatacaca 3107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0476 (Bit Score: 49; Significance: 8e-19; HSPs: 1)
Name: scaffold0476
Description:

Target: scaffold0476; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 58 - 162
Target Start/End: Original strand, 3871 - 3975
Alignment:
Q  58 caagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctcttt 157  Q
    |||||||||| |||  |||||||||||||||   |||||||||||||||||||| ||||||   ||||||||||||||||   |||||||||||| ||||    
T  3871 caagcgaaccgtaattgagcagaacccagactcactgtaagccggtcgcttaagcgaactagacgtcgcttaagcgaagttgaccttagtcagccacttt 3970  T
Q  158 ttgaa 162  Q
    |||||    
T  3971 ttgaa 3975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0090 (Bit Score: 49; Significance: 8e-19; HSPs: 1)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 58 - 209
Target Start/End: Complemental strand, 17643 - 17492
Alignment:
Q  58 caagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctcttt 157  Q
    |||||||||  | |||||||  |||||| || |||||||||||||||||||||| || | | |  |||||||||||||||||||||| ||||||| ||||    
T  17643 caagcgaactgtgagcgagcgaaacccaaactttctgtaagccggtcgcttaagcgagccagccttcgcttaagcgaagtgagccttggtcagccacttt 17544  T
Q  158 ttgaatttttgcttcgtgcacgagggga-cttcttgagcattctaaaatgttt 209  Q
     |||| ||||| ||||||||| ||| || | | ||||||||||||||| ||||    
T  17543 ctgaa-ttttgtttcgtgcactaggcgagccttttgagcattctaaaaggttt 17492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0261 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0261
Description:

Target: scaffold0261; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 87 - 252
Target Start/End: Original strand, 24178 - 24342
Alignment:
Q  87 accttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga- 185  Q
    ||||| ||| ||| ||||||||||| || |||||  ||||||||||||  |||||||||||||| |||||| ||||  |||||||||||||| ||||||     
T  24178 accttttgtgagctggtcgcttaagcgagctatccttcgcttaagcgagatgagccttagtcagtctctttctgaa-ctttgcttcgtgcactaggggac 24276  T
Q  186 cttcttgagcattctaaaatgtttcctttaacttgtataacccttgtataggtatcagaatcctact 252  Q
    | | |||||  || | || |||||| |||| |||||||||||||||| |||| |||| |||||||||    
T  24277 ccttttgagtgtttttaagtgtttcttttagcttgtataacccttgtgtaggcatca-aatcctact 24342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 66 - 235
Target Start/End: Complemental strand, 121369 - 121200
Alignment:
Q  66 ccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaattt 165  Q
    |||| |||||||||||| |  ||  ||||||||||||| ||||||| || | | |  ||||||||||||||   | ||||||||||| |||||||| |||    
T  121369 cccttagcgagcagaacaccaactctctgtaagccggttgcttaagcgagccagccttcgcttaagcgaagaaggtcttagtcagccactttttgacttt 121270  T
Q  166 ttgcttcgtgcacgagggga-cttcttgagcattctaaaatgtttcctttaacttgtataacccttgtata 235  Q
    | ||||||||||| |||| | | | ||||||||| ||||||||||| || ||||||||||||| |||||||    
T  121269 t-gcttcgtgcactagggaatccttttgagcattttaaaatgtttctttcaacttgtataacctttgtata 121200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 66 - 235
Target Start/End: Complemental strand, 132246 - 132077
Alignment:
Q  66 ccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaattt 165  Q
    |||| |||||||||||| |  ||  ||||||||||||| ||||||| || | | |  ||||||||||||||   | ||||||||||| |||||||| |||    
T  132246 cccttagcgagcagaacaccaactctctgtaagccggttgcttaagcgagccagccttcgcttaagcgaagaaggtcttagtcagccactttttgacttt 132147  T
Q  166 ttgcttcgtgcacgagggga-cttcttgagcattctaaaatgtttcctttaacttgtataacccttgtata 235  Q
    | ||||||||||| |||| | | | ||||||||| ||||||||||| || ||||||||||||| |||||||    
T  132146 t-gcttcgtgcactagggaatccttttgagcattttaaaatgtttctttcaacttgtataacctttgtata 132077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0232 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0232
Description:

Target: scaffold0232; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 128 - 235
Target Start/End: Original strand, 19059 - 19166
Alignment:
Q  128 taagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagcattctaaaatgtttcctttaacttgtataac 226  Q
    ||||||||| | | ||||||||||| ||||||||||||| ||||||||||| |||||| | | ||||||||| ||||||||||| || ||||| ||||||    
T  19059 taagcgaagagggtcttagtcagccactttttgaatttt-gcttcgtgcactaggggatccttttgagcattttaaaatgtttctttcaacttatataac 19157  T
Q  227 ccttgtata 235  Q
    | |||||||    
T  19158 ctttgtata 19166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 69 - 252
Target Start/End: Complemental strand, 72747 - 72565
Alignment:
Q  69 taagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttg 168  Q
    |||||||||| |||||  ||||| ||| ||| ||||||||||| || ||| |  ||||||||||||  ||||||| |||||||| |||| ||||||||||    
T  72747 taagcgagcaaaaccccaaccttttgtgagctggtcgcttaagcgagctacccttcgcttaagcgagctgagcct-agtcagccactttctgaatttttg 72649  T
Q  169 cttcgtgcacgagggga-cttcttgagcattctaaaatgtttcctttaacttgtataacccttgtataggtatcagaatcctact 252  Q
    |||||||||  |||||| | | || || ||  |||| |||| | |||| ||| ||||||||||||||| |||||| |||||||||    
T  72648 cttcgtgcattaggggaccctttttagtatcttaaagtgttccttttagcttatataacccttgtataagtatca-aatcctact 72565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0107 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: scaffold0107
Description:

Target: scaffold0107; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 13 - 136
Target Start/End: Original strand, 41113 - 41236
Alignment:
Q  13 gaacctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagt 112  Q
    ||||| || ||| ||||||| |||  |||||| | |||||||||||||||||||  | ||||||| ||||||  ||||||||| ||||| |||||||||     
T  41113 gaacccgtaagcaaaaaaccatttacattctgcttgaagttcgctcaagcgaactgtcagcgagcggaaccccaaccttctgtgagccgatcgcttaagc 41212  T
Q  113 gaactatctgtcgcttaagcgaag 136  Q
    ||||||   |||||||||||||||    
T  41213 gaactagacgtcgcttaagcgaag 41236  T

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Target: scaffold0094 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 122 - 227
Target Start/End: Complemental strand, 51657 - 51552
Alignment:
Q  122 gtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagcattctaaaatgtttcctttaacttg 220  Q
    |||||||||||||||   | ||||||||||| ||||||||||||| |||| |||||| |||| | | | ||||||||| ||||||||||| || ||||||    
T  51657 gtcgcttaagcgaagaaggtcttagtcagccactttttgaatttt-gctttgtgcactagggaatccttttgagcattttaaaatgtttctttcaacttg 51559  T
Q  221 tataacc 227  Q
    |||||||    
T  51558 tataacc 51552  T

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Target: scaffold0483 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0483
Description:

Target: scaffold0483; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 101 - 252
Target Start/End: Original strand, 11631 - 11782
Alignment:
Q  101 ggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagca-tt 198  Q
    ||||||||||| |||||| |  ||||||||||||  ||||||||||||||||||| | ||||  |||||||| ||||| |||||| | | ||||| | ||    
T  11631 ggtcgcttaagcgaactacccttcgcttaagcgagctgagccttagtcagcctctatctgaa-ctttgcttcatgcactaggggacccttttgagtattt 11729  T
Q  199 ctaaaatgtttcctttaacttgtataacccttgtataggtatcagaatcctact 252  Q
     | || | |||| |||| ||||||||||||||||||||| |||| |||||||||    
T  11730 tttaagtttttcttttagcttgtataacccttgtataggcatca-aatcctact 11782  T

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Target: scaffold0720 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0720
Description:

Target: scaffold0720; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 51 - 186
Target Start/End: Original strand, 3831 - 3966
Alignment:
Q  51 gttcgctcaagcgaaccctaagcgagc-agaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtca 149  Q
    ||||||||||||||||| | ||||||| || |||   || || ||| ||| ||||||||||| || ||| |  ||||||||||||| ||||| |||||||    
T  3831 gttcgctcaagcgaaccgtgagcgagcgaggacctcaactttttgtgagctggtcgcttaagcgagctacccttcgcttaagcgaactgagcattagtca 3930  T
Q  150 gcctctttttgaatttttgcttcgtgcacgaggggac 186  Q
    |||| ||||||||   ||||||||||||| |||||||    
T  3931 gcctttttttgaa-ccttgcttcgtgcactaggggac 3966  T

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Target: scaffold0337 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0337
Description:

Target: scaffold0337; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 283 - 387
Target Start/End: Original strand, 9950 - 10053
Alignment:
Q  283 ttagtgaatttttgagatgattgagtatgaaatcaagtgaatatataatttattgaatgaaattgatgtatgtgcataattataattaattgtgtatgtt 382  Q
    |||||||||||  ||||||||||||||||||| |||||||| ||||| | | || |||||| |||||| ||  |  | ||||||||||||||||||| ||    
T  9950 ttagtgaatttg-gagatgattgagtatgaaaccaagtgaacatatactatgtttaatgaacttgatgcattagtttgattataattaattgtgtatttt 10048  T
Q  383 ctgga 387  Q
    |||||    
T  10049 ctgga 10053  T

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Target: scaffold0453 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0453
Description:

Target: scaffold0453; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 123 - 252
Target Start/End: Original strand, 11196 - 11324
Alignment:
Q  123 tcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagcattctaaaatgtttcctttaacttgt 221  Q
    ||||||||||||| ||||||||||||||||| ||| ||||   ||||||||||||| |||||| | | ||||| | | | || |||||  |||| |||||    
T  11196 tcgcttaagcgaactgagccttagtcagcctttttctgaa-ccttgcttcgtgcactaggggacccttttgagtacttttaagtgtttattttagcttgt 11294  T
Q  222 ataacccttgtataggtatcagaatcctact 252  Q
    ||||| |||||||||| |||| |||||||||    
T  11295 ataactcttgtataggcatca-aatcctact 11324  T

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Target: scaffold0206 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0206
Description:

Target: scaffold0206; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 101 - 162
Target Start/End: Complemental strand, 18121 - 18060
Alignment:
Q  101 ggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaa 162  Q
    ||||||||||| || ||| || ||||||||||||| ||||||||||||||||| ||| ||||    
T  18121 ggtcgcttaagcgagctacctttcgcttaagcgaactgagccttagtcagcctttttctgaa 18060  T

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Target: scaffold0169 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0169
Description:

Target: scaffold0169; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 191 - 235
Target Start/End: Complemental strand, 6343 - 6299
Alignment:
Q  191 tgagcattctaaaatgtttcctttaacttgtataacccttgtata 235  Q
    |||||||||||||||||||| || ||||||||||||| |||||||    
T  6343 tgagcattctaaaatgtttctttcaacttgtataacctttgtata 6299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1427 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold1427
Description:

Target: scaffold1427; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 283 - 350
Target Start/End: Complemental strand, 1273 - 1207
Alignment:
Q  283 ttagtgaatttttgagatgattgagtatgaaatcaagtgaatatataatttattgaatgaaattgatg 350  Q
    |||||||||||  ||||||||||||||||||| |||||||| ||||| | | ||||||||| ||||||    
T  1273 ttagtgaatttg-gagatgattgagtatgaaaccaagtgaacatatactatgttgaatgaacttgatg 1207  T

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Target: scaffold0011 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 403 - 457
Target Start/End: Complemental strand, 152601 - 152546
Alignment:
Q  403 gagtagtaagtcatatgaa-atatatgtgtagttgagttgtatgtagatatacaca 457  Q
    |||| |||||||||||| | |||||||| | |||||||||||||||||||||||||    
T  152601 gagttgtaagtcatatgtacatatatgtatggttgagttgtatgtagatatacaca 152546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 433 - 461
Target Start/End: Original strand, 174529 - 174557
Alignment:
Q  433 gttgagttgtatgtagatatacacaggtt 461  Q
    |||||||||||||||||||||||||||||    
T  174529 gttgagttgtatgtagatatacacaggtt 174557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0108 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0108
Description:

Target: scaffold0108; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 408 - 457
Target Start/End: Complemental strand, 45740 - 45691
Alignment:
Q  408 gtaagtcatatgaaatatatgtgtagttgagttgtatgtagatatacaca 457  Q
    ||||||||||| | |||||||  | |||||||||||||||||||||||||    
T  45740 gtaagtcatattatatatatgcattgttgagttgtatgtagatatacaca 45691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 408 - 457
Target Start/End: Original strand, 42875 - 42924
Alignment:
Q  408 gtaagtcatatgaaatatatgtgtagttgagttgtatgtagatatacaca 457  Q
    ||||||||||| | |||||||  | |||||||||||||||||||||||||    
T  42875 gtaagtcatattatatatatgcattgttgagttgtatgtagatatacaca 42924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 60 - 117
Target Start/End: Complemental strand, 134924 - 134867
Alignment:
Q  60 agcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaact 117  Q
    ||||| || ||||||| | |||||||||||| |||||||| ||||||||||| |||||    
T  134924 agcgacccgtaagcgaactgaacccagacctactgtaagctggtcgcttaagcgaact 134867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 122 - 186
Target Start/End: Complemental strand, 134882 - 134820
Alignment:
Q  122 gtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggac 186  Q
    |||||||||||||| ||||| ||||||||||| ||| |||| | ||||||||||||| |||||||    
T  134882 gtcgcttaagcgaactgagcgttagtcagcct-tttctgaa-tcttgcttcgtgcactaggggac 134820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0924 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0924
Description:

Target: scaffold0924; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 67
Target Start/End: Original strand, 1343 - 1391
Alignment:
Q  19 gtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaacc 67  Q
    |||||||||||||  ||||||||||||   |||||||||||||||||||    
T  1343 gtgagcgaaaaacaattttgattctgtccaaagttcgctcaagcgaacc 1391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0535 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0535
Description:

Target: scaffold0535; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 408 - 455
Target Start/End: Original strand, 5972 - 6020
Alignment:
Q  408 gtaagtcatatgaa-atatatgtgtagttgagttgtatgtagatataca 455  Q
    |||||||||||| | |||||||| | |||||||||||||||||||||||    
T  5972 gtaagtcatatgtacatatatgtatggttgagttgtatgtagatataca 6020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0335 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0335
Description:

Target: scaffold0335; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 191 - 235
Target Start/End: Original strand, 3328 - 3372
Alignment:
Q  191 tgagcattctaaaatgtttcctttaacttgtataacccttgtata 235  Q
    |||||||||| ||||||||| || ||||||||||||| |||||||    
T  3328 tgagcattctgaaatgtttctttcaacttgtataacctttgtata 3372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0207 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0207
Description:

Target: scaffold0207; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 429 - 457
Target Start/End: Complemental strand, 8803 - 8775
Alignment:
Q  429 tgtagttgagttgtatgtagatatacaca 457  Q
    |||||||||||||||||||||||||||||    
T  8803 tgtagttgagttgtatgtagatatacaca 8775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0106 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0106
Description:

Target: scaffold0106; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 433 - 461
Target Start/End: Complemental strand, 38610 - 38582
Alignment:
Q  433 gttgagttgtatgtagatatacacaggtt 461  Q
    |||||||||||||||||||||||||||||    
T  38610 gttgagttgtatgtagatatacacaggtt 38582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0076 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: scaffold0076
Description:

Target: scaffold0076; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 433 - 461
Target Start/End: Original strand, 30113 - 30141
Alignment:
Q  433 gttgagttgtatgtagatatacacaggtt 461  Q
    |||||||||||||||||||||||||||||    
T  30113 gttgagttgtatgtagatatacacaggtt 30141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0076; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 433 - 461
Target Start/End: Original strand, 35514 - 35542
Alignment:
Q  433 gttgagttgtatgtagatatacacaggtt 461  Q
    |||||||||||||||||||||||||||||    
T  35514 gttgagttgtatgtagatatacacaggtt 35542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 67
Target Start/End: Complemental strand, 49645 - 49597
Alignment:
Q  19 gtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaacc 67  Q
    |||||||||||||| ||||||||||||   |||||||||||| ||||||    
T  49645 gtgagcgaaaaaccattttgattctgtccaaagttcgctcaatcgaacc 49597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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