View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17068_low_1 (Length: 336)
Name: NF17068_low_1
Description: NF17068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17068_low_1 |
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| [»] scaffold0019 (2 HSPs) |
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| [»] scaffold0196 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 317
Target Start/End: Original strand, 16389949 - 16390260
Alignment:
| Q |
1 |
aaaagcattaatgctaaataagttttctaaaaatatcctaacattcatcaaataaaacttactgtcatggcgaagatgaattttctataattaatacact |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16389949 |
aaaagcattaatgctaaataagttttctaaaaatatcctaacattcatcaaataaaacttactgtcatggcgaagatgaattttctataattaatacact |
16390048 |
T |
|
| Q |
101 |
tcaaaagtatgacaattaaacatgaaagcgtacctgaggagtttaagccctcgtctttctcttggacaacttctcgcaattgacactttccaagaacctt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16390049 |
tcaaaagtatgacaattaaacatgaaagcgtacctgaggagtttaagccctcgtctttctcttggacaacttctcgcaattgacactttccaagaacctt |
16390148 |
T |
|
| Q |
201 |
aatattgtataagaattattccacattttctatcgaaagaaaagttaaataggtcatagtatatcttacatacctcccatatctcttgatcactgtgttg |
300 |
Q |
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||||||||||||||||||||||||||| ||||| || |||||||||||||||||||||| |||||||||||||||||| ||||||| ||| |
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| T |
16390149 |
catattgtataagaattattccacatttcatatcg-aattttttttaaataggtcatagtatatct----tacctcccatatctcttggtcactgtattg |
16390243 |
T |
|
| Q |
301 |
agataaagggtccaagt |
317 |
Q |
| |
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||||||||| ||||||| |
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| T |
16390244 |
agataaaggatccaagt |
16390260 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 187; Significance: 1e-101; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 107 - 317
Target Start/End: Original strand, 11706813 - 11707023
Alignment:
| Q |
107 |
gtatgacaattaaacatgaaagcgtacctgaggagtttaagccctcgtctttctcttggacaacttctcgcaattgacactttccaagaaccttaatatt |
206 |
Q |
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|||| ||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
11706813 |
gtataacaattaaacatgaaagtgtacctgaggagtttaagccctcgtctctctcttggacaacttctcgcaattgacactttccaagaaccttcatatt |
11706912 |
T |
|
| Q |
207 |
gtataagaattattccacattttctatcgaaagaaaagttaaataggtcatagtatatcttacatacctcccatatctcttgatcactgtgttgagataa |
306 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
11706913 |
gtataagaattattccacattttctattgaaagaaaagttaaataggtcatagtatatcttacgtacctcccatatctcttgatcactgtgttgagataa |
11707012 |
T |
|
| Q |
307 |
agggtccaagt |
317 |
Q |
| |
|
||||||||||| |
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| T |
11707013 |
agggtccaagt |
11707023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 115 - 317
Target Start/End: Complemental strand, 11666711 - 11666513
Alignment:
| Q |
115 |
attaaacatgaaagcgtacctgaggagtttaagccctcgtctttctcttggacaacttctcgcaattgacactttccaagaaccttaatattgtataaga |
214 |
Q |
| |
|
||||| |||||||| ||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
11666711 |
attaaccatgaaagtgtacctgtggagtttaagccctcgcctttctcttggacaacttctcgcaattgacactttccaagaaccttaatattgtgaaaga |
11666612 |
T |
|
| Q |
215 |
attattccacattttctatcgaaagaaaagttaaataggtcatagtatatcttacatacctcccatatctcttgatcactgtgttgagataaagggtcca |
314 |
Q |
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|
|||||| ||||||||||||| |||||||||||| || |||||||||| ||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
11666611 |
attattgcacattttctatcctaagaaaagttaactataatgtagtatatct----tacctcccatatctcttgatcggtgtgttgagataaagggtcca |
11666516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 125 - 205
Target Start/End: Original strand, 11628551 - 11628631
Alignment:
| Q |
125 |
aaagcgtacctgaggagtttaagccctcgtctttctcttggacaacttctcgcaattgacactttccaagaaccttaatat |
205 |
Q |
| |
|
||||| ||||||| |||||||| ||||| |||||| ||||||||||||||||||| |||||||| || ||||||||||||| |
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| T |
11628551 |
aaagcatacctgacgagtttaaaccctcttctttcccttggacaacttctcgcaactgacacttcccgagaaccttaatat |
11628631 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 108 - 206
Target Start/End: Complemental strand, 11621980 - 11621882
Alignment:
| Q |
108 |
tatgacaattaaacatgaaagcgtacctgaggagtttaagccctcgtctttctcttggacaacttctcgcaattgacactttccaagaaccttaatatt |
206 |
Q |
| |
|
||||||||| | || ||||| |||||||| || | ||| ||||| |||||||||||||| |||||||||||||||||||| ||||||||||| ||||| |
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|
| T |
11621980 |
tatgacaatgagacttgaaaatgtacctgatgaatctaaaccctcttctttctcttggacgacttctcgcaattgacacttcccaagaaccttcatatt |
11621882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 118 - 200
Target Start/End: Original strand, 11670457 - 11670539
Alignment:
| Q |
118 |
aaacatgaaagcgtacctgaggagtttaagccctcgtctttctcttggacaacttctcgcaattgacactttccaagaacctt |
200 |
Q |
| |
|
|||| |||||| |||||||| |||||||| ||||| ||||| ||||||||||||||||||| |||||||| ||||||||||| |
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| T |
11670457 |
aaacttgaaagtgtacctgatgagtttaaaccctcttcttttccttggacaacttctcgcaactgacacttcccaagaacctt |
11670539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 11706668 - 11706714
Alignment:
| Q |
1 |
aaaagcattaatgctaaataagttttctaaaaatatcctaacattca |
47 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
11706668 |
aaaagctttaatgctaaataagttttctaaaaatatcctaacattca |
11706714 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 271 - 315
Target Start/End: Original strand, 11670606 - 11670650
Alignment:
| Q |
271 |
tacctcccatatctcttgatcactgtgttgagataaagggtccaa |
315 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
11670606 |
tacctcccatatctcttgatcagtgtgttgagataaagggtccaa |
11670650 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 271 - 317
Target Start/End: Complemental strand, 11621818 - 11621772
Alignment:
| Q |
271 |
tacctcccatatctcttgatcactgtgttgagataaagggtccaagt |
317 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
11621818 |
tacctcccatatctcttgatcggtgtgttgagataaagggtccaagt |
11621772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 271 - 315
Target Start/End: Original strand, 11628700 - 11628744
Alignment:
| Q |
271 |
tacctcccatatctcttgatcactgtgttgagataaagggtccaa |
315 |
Q |
| |
|
|||||||||||| ||||||||| |||||||||||||||||||||| |
|
|
| T |
11628700 |
tacctcccatatttcttgatcagtgtgttgagataaagggtccaa |
11628744 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 112 - 205
Target Start/End: Original strand, 5114 - 5207
Alignment:
| Q |
112 |
acaattaaacatgaaagcgtacctgaggagtttaagccctcgtctttctcttggacaacttctcgcaattgacactttccaagaaccttaatat |
205 |
Q |
| |
|
||||| || |||||||| ||||||||||||||||| ||||| |||||| ||||||||||||||||||| |||||||| ||||||||||| |||| |
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|
| T |
5114 |
acaatgaagcatgaaagtgtacctgaggagtttaaaccctcttctttcccttggacaacttctcgcaactgacacttcccaagaacctttatat |
5207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 271 - 317
Target Start/End: Original strand, 5269 - 5315
Alignment:
| Q |
271 |
tacctcccatatctcttgatcactgtgttgagataaagggtccaagt |
317 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||| ||||||| |
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|
| T |
5269 |
tacctcccatatctcttgatcagtgtgttgagataaaggatccaagt |
5315 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0196 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: scaffold0196
Description:
Target: scaffold0196; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 131 - 315
Target Start/End: Complemental strand, 16362 - 16182
Alignment:
| Q |
131 |
tacctgaggagtttaagccctcgtctttctcttggacaacttctcgcaattgacactttccaagaaccttaatattgtataagaattattccacattttc |
230 |
Q |
| |
|
|||||||||||||||| ||||| |||||| ||||||||||||||||||| |||||||| || |||||||| ||||| | ||||||| ||||| || || |
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|
| T |
16362 |
tacctgaggagtttaaaccctcttctttcccttggacaacttctcgcaactgacacttcccgagaaccttcatatttactgagaattagtccacgttatc |
16263 |
T |
|
| Q |
231 |
tatcgaaagaaaagttaaataggtcatagtatatcttacatacctcccatatctcttgatcactgtgttgagataaagggtccaa |
315 |
Q |
| |
|
||| |||| ||| ||||||| | || |||| | |||||||||||||||||||||| | |||| ||||||||||||||| |
|
|
| T |
16262 |
tatgcaaagtcaagataaatagtttgtaccatattt----tacctcccatatctcttgatcagtatgttcagataaagggtccaa |
16182 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 118 - 200
Target Start/End: Complemental strand, 44815179 - 44815097
Alignment:
| Q |
118 |
aaacatgaaagcgtacctgaggagtttaagccctcgtctttctcttggacaacttctcgcaattgacactttccaagaacctt |
200 |
Q |
| |
|
|||||||||| |||||||| |||| ||| || | ||||||||||||||| | ||| |||| |||||||| ||||||||||| |
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|
| T |
44815179 |
aaacatgaaaatgtacctgatgagtctaaaccaccttctttctcttggacagcctcttgcaactgacacttcccaagaacctt |
44815097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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